Wall clock time and date at job start Tue Mar 31 2020 18:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 C 1.53005 * 109.47027 * 240.00167 * 2 1 3 5 5 C 1.50699 * 109.47504 * 120.00353 * 2 1 3 6 6 O 1.21285 * 119.99693 * 359.97438 * 5 2 1 7 7 N 1.34773 * 119.99960 * 179.97438 * 5 2 1 8 8 C 1.46505 * 119.99654 * 179.97438 * 7 5 2 9 9 C 1.53005 * 109.46754 * 180.02562 * 8 7 5 10 10 N 1.46496 * 109.46807 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00099 * 179.97438 * 10 9 8 12 12 O 1.21577 * 119.99827 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00422 * 179.97438 * 11 10 9 14 14 C 1.39239 * 120.00405 * 185.80033 * 13 11 10 15 15 C 1.39693 * 119.57304 * 18.80792 * 14 13 11 16 16 C 1.38641 * 119.49495 * 180.02562 * 15 14 13 17 17 C 1.38361 * 118.67060 * 359.73341 * 16 15 14 18 18 C 1.40572 * 119.12979 * 0.53335 * 17 16 15 19 19 C 1.41328 * 119.78467 * 179.72881 * 18 17 16 20 20 H 1.08003 * 120.00133 * 6.98045 * 19 18 17 21 21 C 1.40024 * 120.00038 * 186.97700 * 19 18 17 22 22 N 1.30746 * 120.00260 * 181.93444 * 21 19 18 23 23 Si 1.86806 * 119.99911 * 1.93817 * 21 19 18 24 24 H 1.48496 * 109.47403 * 179.97438 * 23 21 19 25 25 H 1.48504 * 109.46951 * 299.99645 * 23 21 19 26 26 H 1.48492 * 109.47090 * 59.99491 * 23 21 19 27 27 N 1.31900 * 119.57825 * 198.83121 * 14 13 11 28 28 H 1.08997 * 109.47463 * 299.99307 * 1 2 3 29 29 H 1.08997 * 109.47761 * 60.00176 * 1 2 3 30 30 H 1.09002 * 109.47187 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47499 * 180.02562 * 3 2 1 32 32 H 1.09009 * 109.47044 * 300.00741 * 3 2 1 33 33 H 1.09002 * 109.47026 * 60.00290 * 3 2 1 34 34 H 1.09002 * 109.47151 * 300.00039 * 4 2 1 35 35 H 1.09007 * 109.46928 * 60.00027 * 4 2 1 36 36 H 1.09000 * 109.47041 * 179.97438 * 4 2 1 37 37 H 0.96995 * 120.00204 * 0.02562 * 7 5 2 38 38 H 1.08996 * 109.47132 * 60.00684 * 8 7 5 39 39 H 1.09002 * 109.47305 * 300.00203 * 8 7 5 40 40 H 1.08996 * 109.46984 * 60.00298 * 9 8 7 41 41 H 1.09002 * 109.47139 * 300.00010 * 9 8 7 42 42 H 0.97001 * 120.00437 * 359.97438 * 10 9 8 43 43 H 0.97001 * 119.99346 * 5.81122 * 13 11 10 44 44 H 1.08001 * 120.25043 * 0.02562 * 15 14 13 45 45 H 1.08001 * 120.66587 * 180.02562 * 16 15 14 46 46 H 1.08001 * 120.43474 * 180.26074 * 17 16 15 47 47 H 0.96992 * 119.99851 * 354.83157 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 8 1.2443 -1.1710 2.0289 7 7 3.3575 -0.8340 1.4433 8 6 3.8458 -1.5242 2.6397 9 6 5.3759 -1.5243 2.6396 10 7 5.8642 -2.2150 3.8356 11 6 7.1893 -2.3387 4.0486 12 8 7.9793 -1.8766 3.2483 13 7 7.6387 -2.9736 5.1492 14 6 9.0019 -2.9969 5.4319 15 6 9.8471 -2.0628 4.8282 16 6 11.2043 -2.0878 5.1104 17 6 11.6815 -3.0411 5.9923 18 6 10.7809 -3.9573 6.5628 19 6 11.2543 -4.9406 7.4609 20 1 12.2812 -4.9177 7.7945 21 6 10.3918 -5.9444 7.9182 22 7 10.8191 -6.8317 8.7781 23 14 8.6306 -6.0160 7.2995 24 1 7.9304 -7.1633 7.9307 25 1 7.9308 -4.7543 7.6510 26 1 8.6308 -6.1875 5.8245 27 7 9.4785 -3.9009 6.2657 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7208 -1.2495 37 1 3.9877 -0.4653 0.8048 38 1 3.4822 -2.5517 2.6403 39 1 3.4829 -1.0098 3.5296 40 1 5.7392 -0.4966 2.6392 41 1 5.7391 -2.0385 1.7497 42 1 5.2340 -2.5833 4.4744 43 1 7.0123 -3.4146 5.7443 44 1 9.4464 -1.3268 4.1469 45 1 11.8749 -1.3743 4.6547 46 1 12.7329 -3.0837 6.2357 47 1 11.7523 -6.8408 9.0423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672720251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:26 Heat of formation + Delta-G solvation = -49.682938 kcal Electronic energy + Delta-G solvation = -27762.786574 eV Core-core repulsion = 23751.897088 eV Total energy + Delta-G solvation = -4010.889486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.64224 -40.32381 -38.42474 -36.50487 -35.93037 -34.59154 -34.19461 -33.44931 -31.11914 -30.04357 -28.72684 -27.87845 -27.51102 -25.35499 -24.26339 -22.60980 -22.17934 -21.75620 -20.36784 -19.82824 -18.75023 -17.94637 -17.34958 -16.82665 -16.46805 -16.32471 -15.58331 -15.22182 -14.98631 -14.77687 -14.64408 -14.48510 -14.22767 -14.08597 -13.79750 -13.53293 -13.08821 -12.87808 -12.79951 -12.70707 -12.42258 -12.23586 -12.21769 -12.14926 -12.13314 -11.85495 -11.45855 -11.42747 -11.24760 -10.82416 -10.38273 -10.10688 -10.03725 -9.70932 -9.54822 -9.48295 -9.20313 -9.16160 -8.55719 -7.81198 -7.37910 -7.24948 -4.77981 2.25425 2.26525 2.40257 2.64492 3.00539 3.35583 3.53007 3.64921 3.95645 4.08214 4.21388 4.29464 4.33139 4.35530 4.37540 4.64522 4.71058 4.72008 5.02788 5.05656 5.10604 5.19909 5.31373 5.39213 5.41754 5.49129 5.50721 5.53303 5.61366 5.69849 5.80440 5.82417 5.93535 6.06339 6.20108 6.38629 6.52851 6.62639 6.82505 7.02827 7.14272 7.29923 7.44328 7.60242 7.73829 7.80455 7.86748 8.16422 8.31375 8.61038 8.68617 9.39721 9.99846 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022968 B = 0.002031 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.815537 B =13786.153993 C =14735.380292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.086 4.086 3 C -0.142 4.142 4 C -0.142 4.142 5 C 0.524 3.476 6 O -0.536 6.536 7 N -0.726 5.726 8 C 0.107 3.893 9 C 0.131 3.869 10 N -0.744 5.744 11 C 0.712 3.288 12 O -0.562 6.562 13 N -0.666 5.666 14 C 0.404 3.596 15 C -0.311 4.311 16 C -0.034 4.034 17 C -0.279 4.279 18 C 0.275 3.725 19 C -0.476 4.476 20 H 0.083 0.917 21 C 0.042 3.958 22 N -0.807 5.807 23 Si 1.159 2.841 24 H -0.333 1.333 25 H -0.285 1.285 26 H -0.294 1.294 27 N -0.600 5.600 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.403 0.597 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.400 0.600 43 H 0.405 0.595 44 H 0.141 0.859 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.959 13.224 -16.802 27.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.090 4.090 3 C -0.199 4.199 4 C -0.200 4.200 5 C 0.310 3.690 6 O -0.412 6.412 7 N -0.379 5.379 8 C -0.018 4.018 9 C 0.005 3.995 10 N -0.402 5.402 11 C 0.412 3.588 12 O -0.438 6.438 13 N -0.313 5.313 14 C 0.173 3.827 15 C -0.336 4.336 16 C -0.058 4.058 17 C -0.301 4.301 18 C 0.151 3.849 19 C -0.509 4.509 20 H 0.102 0.898 21 C -0.179 4.179 22 N -0.429 5.429 23 Si 0.995 3.005 24 H -0.267 1.267 25 H -0.213 1.213 26 H -0.222 1.222 27 N -0.326 5.326 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.238 0.762 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.234 0.766 43 H 0.240 0.760 44 H 0.158 0.842 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.643 11.914 -16.337 28.190 hybrid contribution 2.080 1.107 -0.098 2.358 sum -17.563 13.021 -16.435 27.352 Atomic orbital electron populations 1.21670 0.91771 1.02971 1.02173 1.20831 0.98219 0.96475 0.93432 1.21889 1.01305 0.93630 1.03120 1.21891 1.01312 1.00741 0.96015 1.20613 0.81752 0.79267 0.87349 1.90719 1.55253 1.48247 1.46959 1.45790 1.07466 1.59256 1.25374 1.21447 0.93032 0.98579 0.88701 1.21199 0.91866 0.98248 0.88141 1.44832 1.05561 1.63087 1.26703 1.15614 0.82168 0.79418 0.81616 1.90861 1.53596 1.53203 1.46149 1.42311 1.07376 1.56031 1.25594 1.17781 0.81713 0.91060 0.92186 1.21525 0.93643 1.06221 1.12166 1.20926 0.94569 0.95829 0.94490 1.21592 0.99388 1.02662 1.06503 1.18251 0.85151 0.91466 0.90043 1.20718 0.99597 1.08281 1.22263 0.89843 1.27779 1.08858 0.90450 0.90780 1.70642 1.19170 1.31537 1.21511 0.81760 0.71051 0.72694 0.74994 1.26702 1.21344 1.22249 1.65871 1.16221 1.26328 1.24190 0.91868 0.91901 0.91864 0.91991 0.91155 0.91919 0.91904 0.91154 0.91987 0.76192 0.90537 0.90559 0.90734 0.90758 0.76607 0.76021 0.84158 0.87610 0.87678 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 7.76 37.16 0.29 -0.53 16 2 C -0.09 -0.51 0.87 -155.66 -0.14 -0.65 16 3 C -0.14 -0.62 8.37 37.16 0.31 -0.31 16 4 C -0.14 -0.63 8.37 37.16 0.31 -0.32 16 5 C 0.52 4.57 6.48 -10.99 -0.07 4.50 16 6 O -0.54 -6.86 15.98 5.55 0.09 -6.78 16 7 N -0.73 -4.92 5.34 -60.29 -0.32 -5.24 16 8 C 0.11 0.80 5.79 -4.04 -0.02 0.78 16 9 C 0.13 1.13 5.79 -4.04 -0.02 1.11 16 10 N -0.74 -8.16 5.56 -65.23 -0.36 -8.52 16 11 C 0.71 11.63 8.40 -86.92 -0.73 10.90 16 12 O -0.56 -10.93 13.14 5.30 0.07 -10.87 16 13 N -0.67 -12.19 5.42 -15.79 -0.09 -12.27 16 14 C 0.40 9.25 7.51 -155.00 -1.16 8.08 16 15 C -0.31 -6.98 8.83 -38.89 -0.34 -7.33 16 16 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 17 C -0.28 -6.66 9.83 -38.66 -0.38 -7.04 16 18 C 0.27 7.23 6.39 -85.00 -0.54 6.69 16 19 C -0.48 -13.01 9.58 -37.74 -0.36 -13.37 16 20 H 0.08 2.27 8.05 -52.48 -0.42 1.85 16 21 C 0.04 1.15 5.52 -17.34 -0.10 1.05 16 22 N -0.81 -21.98 13.65 55.55 0.76 -21.23 16 23 Si 1.16 28.03 25.53 -169.99 -4.34 23.69 16 24 H -0.33 -7.99 7.11 56.52 0.40 -7.58 16 25 H -0.29 -6.59 6.70 56.52 0.38 -6.21 16 26 H -0.29 -7.24 7.10 56.52 0.40 -6.84 16 27 N -0.60 -15.18 4.58 -10.26 -0.05 -15.23 16 28 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.06 0.21 7.57 -51.93 -0.39 -0.18 16 32 H 0.07 0.23 8.14 -51.92 -0.42 -0.19 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.23 8.14 -51.92 -0.42 -0.19 16 36 H 0.06 0.22 7.56 -51.93 -0.39 -0.17 16 37 H 0.40 1.82 7.31 -40.82 -0.30 1.52 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.40 3.35 8.49 -40.82 -0.35 3.00 16 43 H 0.40 6.43 8.84 -40.82 -0.36 6.07 16 44 H 0.14 3.09 5.33 -52.50 -0.28 2.81 16 45 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 46 H 0.11 2.34 8.06 -52.49 -0.42 1.91 16 47 H 0.28 7.38 8.72 -40.82 -0.36 7.02 16 LS Contribution 387.23 15.07 5.84 5.84 Total: -1.00 -34.26 387.23 -8.93 -43.19 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -7.16 Total: 4.97 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -3.36 Total: 2.44 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.06 Total: -62.49 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.16 Total: -17.64 kcal Atomic # 14 Polarization: 28.03 SS G_CDS: -4.34 Total: 23.69 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.26 -8.93 -43.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672720251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.493 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds