Wall clock time and date at job start Tue Mar 31 2020 18:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 C 1.53005 * 109.47027 * 240.00167 * 2 1 3 5 5 C 1.50699 * 109.47504 * 120.00353 * 2 1 3 6 6 O 1.21285 * 119.99693 * 359.97438 * 5 2 1 7 7 N 1.34773 * 119.99960 * 179.97438 * 5 2 1 8 8 C 1.46505 * 119.99654 * 179.97438 * 7 5 2 9 9 C 1.53005 * 109.46754 * 180.02562 * 8 7 5 10 10 N 1.46496 * 109.46807 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00099 * 179.97438 * 10 9 8 12 12 O 1.21577 * 119.99827 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00422 * 179.97438 * 11 10 9 14 14 C 1.39239 * 120.00405 * 185.80033 * 13 11 10 15 15 C 1.39693 * 119.57304 * 18.80792 * 14 13 11 16 16 C 1.38641 * 119.49495 * 180.02562 * 15 14 13 17 17 C 1.38361 * 118.67060 * 359.73341 * 16 15 14 18 18 C 1.40572 * 119.12979 * 0.53335 * 17 16 15 19 19 C 1.41328 * 119.78467 * 179.72881 * 18 17 16 20 20 H 1.08003 * 120.00133 * 6.98045 * 19 18 17 21 21 C 1.40024 * 120.00038 * 186.97700 * 19 18 17 22 22 N 1.30746 * 120.00260 * 181.93444 * 21 19 18 23 23 Si 1.86806 * 119.99911 * 1.93817 * 21 19 18 24 24 H 1.48496 * 109.47403 * 179.97438 * 23 21 19 25 25 H 1.48504 * 109.46951 * 299.99645 * 23 21 19 26 26 H 1.48492 * 109.47090 * 59.99491 * 23 21 19 27 27 N 1.31900 * 119.57825 * 198.83121 * 14 13 11 28 28 H 1.08997 * 109.47463 * 299.99307 * 1 2 3 29 29 H 1.08997 * 109.47761 * 60.00176 * 1 2 3 30 30 H 1.09002 * 109.47187 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47499 * 180.02562 * 3 2 1 32 32 H 1.09009 * 109.47044 * 300.00741 * 3 2 1 33 33 H 1.09002 * 109.47026 * 60.00290 * 3 2 1 34 34 H 1.09002 * 109.47151 * 300.00039 * 4 2 1 35 35 H 1.09007 * 109.46928 * 60.00027 * 4 2 1 36 36 H 1.09000 * 109.47041 * 179.97438 * 4 2 1 37 37 H 0.96995 * 120.00204 * 0.02562 * 7 5 2 38 38 H 1.08996 * 109.47132 * 60.00684 * 8 7 5 39 39 H 1.09002 * 109.47305 * 300.00203 * 8 7 5 40 40 H 1.08996 * 109.46984 * 60.00298 * 9 8 7 41 41 H 1.09002 * 109.47139 * 300.00010 * 9 8 7 42 42 H 0.97001 * 120.00437 * 359.97438 * 10 9 8 43 43 H 0.97001 * 119.99346 * 5.81122 * 13 11 10 44 44 H 1.08001 * 120.25043 * 0.02562 * 15 14 13 45 45 H 1.08001 * 120.66587 * 180.02562 * 16 15 14 46 46 H 1.08001 * 120.43474 * 180.26074 * 17 16 15 47 47 H 0.96992 * 119.99851 * 354.83157 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 8 1.2443 -1.1710 2.0289 7 7 3.3575 -0.8340 1.4433 8 6 3.8458 -1.5242 2.6397 9 6 5.3759 -1.5243 2.6396 10 7 5.8642 -2.2150 3.8356 11 6 7.1893 -2.3387 4.0486 12 8 7.9793 -1.8766 3.2483 13 7 7.6387 -2.9736 5.1492 14 6 9.0019 -2.9969 5.4319 15 6 9.8471 -2.0628 4.8282 16 6 11.2043 -2.0878 5.1104 17 6 11.6815 -3.0411 5.9923 18 6 10.7809 -3.9573 6.5628 19 6 11.2543 -4.9406 7.4609 20 1 12.2812 -4.9177 7.7945 21 6 10.3918 -5.9444 7.9182 22 7 10.8191 -6.8317 8.7781 23 14 8.6306 -6.0160 7.2995 24 1 7.9304 -7.1633 7.9307 25 1 7.9308 -4.7543 7.6510 26 1 8.6308 -6.1875 5.8245 27 7 9.4785 -3.9009 6.2657 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7208 -1.2495 37 1 3.9877 -0.4653 0.8048 38 1 3.4822 -2.5517 2.6403 39 1 3.4829 -1.0098 3.5296 40 1 5.7392 -0.4966 2.6392 41 1 5.7391 -2.0385 1.7497 42 1 5.2340 -2.5833 4.4744 43 1 7.0123 -3.4146 5.7443 44 1 9.4464 -1.3268 4.1469 45 1 11.8749 -1.3743 4.6547 46 1 12.7329 -3.0837 6.2357 47 1 11.7523 -6.8408 9.0423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672720251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:25 Heat of formation + Delta-G solvation = -73.905449 kcal Electronic energy + Delta-G solvation = -27763.836941 eV Core-core repulsion = 23751.897088 eV Total energy + Delta-G solvation = -4011.939853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.85140 -41.20209 -40.10062 -37.34110 -36.57928 -36.20042 -35.43411 -34.98691 -32.97625 -31.53475 -29.85032 -28.20071 -27.98904 -27.24239 -25.16170 -23.80005 -23.49804 -23.07993 -21.85117 -20.51712 -20.44986 -19.48997 -18.59563 -17.69457 -17.34611 -17.15497 -16.91986 -16.64942 -16.32280 -16.03722 -15.76304 -15.51826 -15.19438 -15.10351 -14.89195 -14.66870 -14.55845 -14.29502 -14.21475 -13.70607 -13.30354 -13.11232 -12.98534 -12.97125 -12.96301 -12.80413 -12.65624 -12.60927 -12.24210 -11.89386 -11.83899 -11.76885 -11.62295 -11.17572 -11.01303 -10.76247 -10.40782 -10.30073 -10.15563 -9.73923 -9.26000 -9.15647 -6.80751 0.59599 0.76087 1.23416 1.56878 1.59604 1.69742 1.97954 2.05064 2.20355 2.44543 2.69850 3.09244 3.56653 3.58149 3.65439 3.85806 3.92979 4.03251 4.08001 4.27593 4.36981 4.42519 4.64230 4.71477 4.72147 4.73839 4.77719 4.82201 4.84364 4.84878 4.96585 4.96701 5.02556 5.19545 5.26716 5.33506 5.35391 5.35588 5.37790 5.40072 5.44870 5.65838 5.78249 5.91979 6.03926 6.42073 6.46184 6.61363 6.80327 7.18615 7.33925 7.51996 7.96104 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022968 B = 0.002031 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.815537 B =13786.153993 C =14735.380292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.083 4.083 3 C -0.140 4.140 4 C -0.140 4.140 5 C 0.519 3.481 6 O -0.583 6.583 7 N -0.714 5.714 8 C 0.116 3.884 9 C 0.135 3.865 10 N -0.723 5.723 11 C 0.713 3.287 12 O -0.592 6.592 13 N -0.665 5.665 14 C 0.394 3.606 15 C -0.305 4.305 16 C -0.026 4.026 17 C -0.295 4.295 18 C 0.259 3.741 19 C -0.509 4.509 20 H 0.068 0.932 21 C 0.013 3.987 22 N -0.831 5.831 23 Si 1.191 2.809 24 H -0.332 1.332 25 H -0.271 1.271 26 H -0.301 1.301 27 N -0.613 5.613 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.416 0.584 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.415 0.585 43 H 0.416 0.584 44 H 0.152 0.848 45 H 0.145 0.855 46 H 0.114 0.886 47 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.166 15.337 -19.191 31.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.086 4.086 3 C -0.197 4.197 4 C -0.198 4.198 5 C 0.307 3.693 6 O -0.463 6.463 7 N -0.368 5.368 8 C -0.009 4.009 9 C 0.011 3.989 10 N -0.380 5.380 11 C 0.412 3.588 12 O -0.471 6.471 13 N -0.313 5.313 14 C 0.162 3.838 15 C -0.329 4.329 16 C -0.050 4.050 17 C -0.317 4.317 18 C 0.134 3.866 19 C -0.541 4.541 20 H 0.086 0.914 21 C -0.204 4.204 22 N -0.454 5.454 23 Si 1.024 2.976 24 H -0.265 1.265 25 H -0.198 1.198 26 H -0.230 1.230 27 N -0.340 5.340 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.254 0.746 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.252 0.748 43 H 0.253 0.747 44 H 0.170 0.830 45 H 0.162 0.838 46 H 0.132 0.868 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.889 14.055 -18.745 31.389 hybrid contribution 2.399 0.635 0.467 2.526 sum -18.490 14.690 -18.278 29.862 Atomic orbital electron populations 1.21680 0.92423 1.02034 1.02486 1.20868 0.97737 0.97373 0.92662 1.21902 1.02111 0.92257 1.03446 1.21906 1.02102 1.00042 0.95702 1.21194 0.81783 0.78661 0.87670 1.90698 1.56460 1.50384 1.48729 1.45700 1.07285 1.58528 1.25264 1.21292 0.92065 0.98516 0.89047 1.21287 0.92306 0.98248 0.87056 1.44696 1.03854 1.61970 1.27474 1.15705 0.83465 0.78914 0.80675 1.90823 1.54918 1.54398 1.46917 1.42267 1.05916 1.56568 1.26541 1.18107 0.83750 0.90471 0.91471 1.21886 0.93996 1.05746 1.11277 1.21344 0.95051 0.95464 0.93161 1.21758 0.99729 1.03002 1.07192 1.18424 0.86212 0.91793 0.90153 1.20705 0.99271 1.09836 1.24335 0.91362 1.28571 1.10912 0.90219 0.90657 1.70665 1.19176 1.32541 1.23030 0.81354 0.69032 0.73176 0.74034 1.26541 1.19797 1.23022 1.65848 1.15951 1.27191 1.24965 0.93389 0.89699 0.93446 0.90708 0.89497 0.92971 0.93036 0.89485 0.90731 0.74605 0.90896 0.90731 0.90137 0.90491 0.74816 0.74731 0.83032 0.83758 0.86763 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 7.76 71.98 0.56 -0.97 16 2 C -0.08 -0.84 0.87 -52.93 -0.05 -0.88 16 3 C -0.14 -0.86 8.37 71.98 0.60 -0.26 16 4 C -0.14 -0.89 8.37 71.98 0.60 -0.29 16 5 C 0.52 8.44 6.48 87.66 0.57 9.01 16 6 O -0.58 -14.88 15.98 -3.05 -0.05 -14.92 16 7 N -0.71 -8.14 5.34 -463.04 -2.47 -10.61 16 8 C 0.12 1.48 5.79 86.38 0.50 1.98 16 9 C 0.14 1.95 5.79 86.38 0.50 2.45 16 10 N -0.72 -13.73 5.56 -478.55 -2.66 -16.39 16 11 C 0.71 21.33 8.40 179.05 1.50 22.83 16 12 O -0.59 -21.38 13.14 -3.96 -0.05 -21.43 16 13 N -0.66 -22.75 5.42 -322.12 -1.75 -24.49 16 14 C 0.39 17.28 7.51 133.27 1.00 18.28 16 15 C -0.30 -12.89 8.83 22.72 0.20 -12.69 16 16 C -0.03 -1.07 10.15 22.40 0.23 -0.84 16 17 C -0.29 -13.76 9.83 22.87 0.22 -13.54 16 18 C 0.26 13.63 6.39 40.19 0.26 13.89 16 19 C -0.51 -28.49 9.58 23.46 0.22 -28.26 16 20 H 0.07 3.88 8.05 -2.91 -0.02 3.86 16 21 C 0.01 0.70 5.52 85.29 0.47 1.17 16 22 N -0.83 -46.48 13.65 21.84 0.30 -46.18 16 23 Si 1.19 56.87 25.53 68.60 1.75 58.62 16 24 H -0.33 -15.55 7.11 99.48 0.71 -14.84 16 25 H -0.27 -12.08 6.70 99.48 0.67 -11.41 16 26 H -0.30 -14.60 7.10 99.48 0.71 -13.89 16 27 N -0.61 -30.42 4.58 -186.37 -0.85 -31.27 16 28 H 0.05 0.71 8.10 -2.39 -0.02 0.69 16 29 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 31 H 0.07 0.27 7.57 -2.39 -0.02 0.25 16 32 H 0.09 0.28 8.14 -2.38 -0.02 0.26 16 33 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 36 H 0.07 0.29 7.56 -2.39 -0.02 0.27 16 37 H 0.42 2.51 7.31 -92.71 -0.68 1.84 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.41 5.70 8.49 -92.71 -0.79 4.91 16 43 H 0.42 12.20 8.84 -92.71 -0.82 11.38 16 44 H 0.15 6.18 5.33 -3.17 -0.02 6.16 16 45 H 0.14 4.77 8.06 -2.91 -0.02 4.74 16 46 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 47 H 0.28 15.20 8.72 -92.71 -0.81 14.39 16 Total: -1.00 -74.77 387.23 0.26 -74.51 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -1.35 Total: 20.30 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 7.40 Total: 11.86 kcal Atomic # 7 Polarization: -121.51 SS G_CDS: -7.44 Total: -128.94 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -0.10 Total: -36.35 kcal Atomic # 14 Polarization: 56.87 SS G_CDS: 1.75 Total: 58.62 kcal Total: -74.77 0.26 -74.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672720251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.602 kcal (2) G-P(sol) polarization free energy of solvation -74.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds