Wall clock time and date at job start Tue Mar 31 2020 17:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47320 * 240.00148 * 2 1 3 5 5 C 1.53004 * 109.47400 * 119.99959 * 2 1 3 6 6 H 1.08997 * 109.47405 * 180.02562 * 5 2 1 7 7 C 1.53008 * 109.46881 * 300.00359 * 5 2 1 8 8 N 1.46497 * 109.46726 * 174.99836 * 7 5 2 9 9 C 1.36942 * 119.99631 * 180.02562 * 8 7 5 10 10 H 1.07996 * 120.00232 * 359.97438 * 9 8 7 11 11 C 1.38810 * 119.99694 * 179.97438 * 9 8 7 12 12 N 1.31612 * 120.00424 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99747 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47123 * 60.00078 * 13 11 9 15 15 H 1.48499 * 109.47238 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47255 * 300.00269 * 13 11 9 17 17 N 1.46495 * 109.46808 * 59.99923 * 5 2 1 18 18 C 1.34774 * 119.99953 * 85.00635 * 17 5 2 19 19 O 1.21503 * 120.00209 * 359.97438 * 18 17 5 20 20 C 1.48234 * 120.00008 * 179.97438 * 18 17 5 21 21 C 1.39626 * 119.65307 * 180.27155 * 20 18 17 22 22 C 1.38541 * 119.24818 * 180.23058 * 21 20 18 23 23 C 1.38589 * 118.54913 * 359.50256 * 22 21 20 24 24 C 1.39590 * 119.24721 * 0.25273 * 23 22 21 25 25 C 1.48217 * 119.65122 * 179.97438 * 24 23 22 26 26 N 1.34776 * 120.00034 * 180.02562 * 25 24 23 27 27 O 1.21508 * 120.00338 * 0.02562 * 25 24 23 28 28 N 1.32337 * 119.65347 * 359.97438 * 20 18 17 29 29 H 1.08996 * 109.46976 * 300.00011 * 1 2 3 30 30 H 1.09002 * 109.47191 * 60.00034 * 1 2 3 31 31 H 1.08997 * 109.46766 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46849 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47045 * 300.00056 * 3 2 1 34 34 H 1.08997 * 109.46682 * 59.99995 * 3 2 1 35 35 H 1.08997 * 109.47227 * 299.99749 * 4 2 1 36 36 H 1.08992 * 109.47091 * 59.99965 * 4 2 1 37 37 H 1.09002 * 109.47305 * 179.97438 * 4 2 1 38 38 H 1.09003 * 109.46652 * 294.99733 * 7 5 2 39 39 H 1.08993 * 109.46881 * 54.99676 * 7 5 2 40 40 H 0.96995 * 120.00290 * 359.97438 * 8 7 5 41 41 H 0.97005 * 120.00538 * 179.97438 * 12 11 9 42 42 H 0.96999 * 120.00355 * 264.99941 * 17 5 2 43 43 H 1.08010 * 120.37871 * 0.02562 * 21 20 18 44 44 H 1.08002 * 120.72910 * 179.78326 * 22 21 20 45 45 H 1.08007 * 120.37338 * 180.23181 * 23 22 21 46 46 H 0.97005 * 120.00104 * 359.97438 * 26 25 24 47 47 H 0.96999 * 120.00143 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0401 -0.7212 1.2493 6 1 3.1300 -0.7209 1.2495 7 6 1.5300 0.0000 2.4985 8 7 1.9176 -0.7566 3.6916 9 6 1.5680 -0.3010 4.9348 10 1 1.0069 0.6163 5.0357 11 6 1.9348 -1.0182 6.0652 12 7 2.6181 -2.1363 5.9423 13 14 1.4585 -0.3963 7.7611 14 1 -0.0206 -0.3059 7.8578 15 1 1.9650 -1.3361 8.7933 16 1 2.0519 0.9472 7.9804 17 7 1.5517 -2.1024 1.2492 18 6 2.2286 -3.0564 0.5798 19 8 3.2435 -2.7709 -0.0241 20 6 1.7347 -4.4541 0.5802 21 6 2.4447 -5.4378 -0.1110 22 6 1.9730 -6.7404 -0.1090 23 6 0.8116 -7.0232 0.5923 24 6 0.1539 -5.9929 1.2664 25 6 -1.0892 -6.2852 2.0187 26 7 -1.7302 -5.2956 2.6717 27 8 -1.5305 -7.4169 2.0469 28 7 0.6288 -4.7576 1.2406 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6768 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1391 37 1 3.1300 -0.7208 -1.2495 38 1 1.9646 0.9986 2.5444 39 1 0.4437 0.0782 2.4548 40 1 2.4211 -1.5806 3.6010 41 1 2.8748 -2.6373 6.7323 42 1 0.7413 -2.3304 1.7311 43 1 3.3496 -5.1855 -0.6440 44 1 2.5013 -7.5195 -0.6386 45 1 0.4197 -8.0294 0.6167 46 1 -1.3777 -4.3921 2.6495 47 1 -2.5435 -5.4869 3.1644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677306925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:43 Heat of formation + Delta-G solvation = -32.315608 kcal Electronic energy + Delta-G solvation = -29816.096351 eV Core-core repulsion = 25805.959969 eV Total energy + Delta-G solvation = -4010.136382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.99682 -39.88350 -38.74963 -37.29068 -34.46153 -34.01972 -33.41833 -32.45175 -31.62650 -30.97241 -27.81381 -27.14588 -26.82808 -25.06823 -24.73545 -23.59310 -21.72545 -21.23335 -20.43678 -18.72994 -18.32716 -17.65737 -17.17201 -16.86065 -16.17161 -15.89251 -15.69081 -15.29883 -15.15787 -14.78125 -14.47240 -14.08946 -13.93479 -13.88167 -13.63208 -13.44877 -13.15019 -13.09645 -12.70361 -12.35457 -12.15388 -11.96839 -11.81912 -11.39745 -11.23949 -11.12196 -10.86696 -10.82084 -10.74918 -10.54782 -10.27487 -10.23492 -10.04284 -9.97495 -9.77255 -9.75775 -9.63670 -9.39210 -8.91074 -8.62237 -6.96588 -5.79252 -3.09062 0.33822 0.74324 2.39739 3.05616 3.16630 3.31647 3.40982 3.45973 3.47066 3.83495 3.92651 4.53975 4.62989 4.66677 4.76066 4.77296 4.92045 5.02141 5.13493 5.27867 5.30563 5.52227 5.54476 5.65275 5.71592 5.77326 5.83356 5.87648 5.90211 6.01727 6.06905 6.10808 6.14274 6.23417 6.28709 6.43614 6.44303 6.48085 6.60652 6.64521 6.70248 6.90696 7.13431 7.41233 7.65668 7.83944 8.10968 8.37806 8.40772 9.50006 10.06168 10.41261 11.42626 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007545 B = 0.004870 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3710.114440 B = 5747.564256 C = 8106.753105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.076 4.076 3 C -0.140 4.140 4 C -0.130 4.130 5 C 0.146 3.854 6 H 0.089 0.911 7 C 0.142 3.858 8 N -0.730 5.730 9 C -0.242 4.242 10 H 0.069 0.931 11 C -0.010 4.010 12 N -0.929 5.929 13 Si 0.906 3.094 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.286 1.286 17 N -0.684 5.684 18 C 0.571 3.429 19 O -0.533 6.533 20 C 0.088 3.912 21 C -0.091 4.091 22 C -0.088 4.088 23 C -0.094 4.094 24 C 0.074 3.926 25 C 0.582 3.418 26 N -0.829 5.829 27 O -0.542 6.542 28 N -0.426 5.426 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.036 0.964 39 H 0.029 0.971 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.412 0.588 43 H 0.154 0.846 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.415 0.585 47 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.869 -4.051 -15.530 16.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.187 4.187 5 C 0.042 3.958 6 H 0.107 0.893 7 C 0.014 3.986 8 N -0.375 5.375 9 C -0.373 4.373 10 H 0.087 0.913 11 C -0.206 4.206 12 N -0.577 5.577 13 Si 0.737 3.263 14 H -0.213 1.213 15 H -0.218 1.218 16 H -0.213 1.213 17 N -0.333 5.333 18 C 0.355 3.645 19 O -0.410 6.410 20 C -0.053 4.053 21 C -0.111 4.111 22 C -0.114 4.114 23 C -0.115 4.115 24 C -0.067 4.067 25 C 0.365 3.635 26 N -0.392 5.392 27 O -0.419 6.419 28 N -0.141 5.141 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.047 0.953 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.249 0.751 43 H 0.172 0.828 44 H 0.167 0.833 45 H 0.170 0.830 46 H 0.246 0.754 47 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -4.808 -3.821 -15.423 16.601 hybrid contribution -0.114 -0.385 1.098 1.169 sum -4.922 -4.206 -14.325 15.720 Atomic orbital electron populations 1.21918 0.94634 1.01706 1.01671 1.20904 0.95911 0.95679 0.95283 1.21885 1.01212 0.94892 1.01832 1.21889 1.01653 0.99545 0.95638 1.21381 0.99951 0.79827 0.94669 0.89320 1.21096 0.97452 0.94700 0.85330 1.42342 1.66999 1.27730 1.00459 1.19134 1.29127 1.05494 0.83580 0.91255 1.24727 1.00829 0.97345 0.97746 1.69653 1.43097 1.16411 1.28577 0.86299 0.77940 0.77739 0.84337 1.21304 1.21774 1.21291 1.45760 1.28873 1.08032 1.50611 1.17672 0.83680 0.83470 0.79685 1.90774 1.24436 1.81452 1.44361 1.21291 0.92208 0.95485 0.96332 1.22365 1.00007 0.92492 0.96279 1.21650 0.95311 0.96750 0.97666 1.22302 0.94378 1.00887 0.93940 1.21043 0.96673 0.89616 0.99342 1.17785 0.82594 0.84695 0.78453 1.43648 1.29526 1.12887 1.53119 1.90817 1.66882 1.21319 1.62884 1.67383 1.11710 1.20464 1.14513 0.91828 0.93192 0.92839 0.92520 0.92867 0.91849 0.93091 0.93911 0.91905 0.94616 0.95314 0.78060 0.93488 0.75139 0.82790 0.83262 0.83007 0.75366 0.76281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 7.97 37.16 0.30 -1.40 16 2 C -0.08 -1.00 0.62 -154.50 -0.10 -1.09 16 3 C -0.14 -1.69 8.12 37.16 0.30 -1.39 16 4 C -0.13 -1.71 7.00 37.16 0.26 -1.45 16 5 C 0.15 2.33 1.69 -67.93 -0.11 2.22 16 6 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 7 C 0.14 2.61 5.10 -4.04 -0.02 2.59 16 8 N -0.73 -17.39 5.43 -59.91 -0.33 -17.72 16 9 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 10 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 11 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 12 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 13 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 N -0.68 -10.65 3.63 -54.63 -0.20 -10.84 16 18 C 0.57 9.03 6.17 -12.15 -0.07 8.95 16 19 O -0.53 -9.24 13.44 5.36 0.07 -9.17 16 20 C 0.09 1.24 6.75 -83.02 -0.56 0.68 16 21 C -0.09 -1.04 9.63 -38.95 -0.38 -1.42 16 22 C -0.09 -0.82 10.16 -39.34 -0.40 -1.22 16 23 C -0.09 -1.03 9.63 -38.95 -0.38 -1.40 16 24 C 0.07 0.97 6.75 -83.03 -0.56 0.41 16 25 C 0.58 7.86 8.09 -12.16 -0.10 7.77 16 26 N -0.83 -9.21 8.86 30.62 0.27 -8.94 16 27 O -0.54 -8.55 17.16 5.36 0.09 -8.46 16 28 N -0.43 -5.87 8.71 -6.38 -0.06 -5.92 16 29 H 0.06 0.77 6.32 -51.93 -0.33 0.45 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.64 7.60 -51.93 -0.39 0.25 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.78 6.54 -51.93 -0.34 0.44 16 35 H 0.05 0.72 5.77 -51.93 -0.30 0.42 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.91 7.53 -51.93 -0.39 0.51 16 38 H 0.04 0.67 6.71 -51.93 -0.35 0.32 16 39 H 0.03 0.52 6.17 -51.93 -0.32 0.20 16 40 H 0.39 9.94 7.33 -40.82 -0.30 9.65 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.41 6.42 7.93 -40.82 -0.32 6.09 16 43 H 0.15 1.61 7.64 -52.48 -0.40 1.21 16 44 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.15 1.45 7.64 -52.48 -0.40 1.05 16 46 H 0.42 4.51 8.16 -40.82 -0.33 4.18 16 47 H 0.41 3.75 8.93 -40.82 -0.36 3.38 16 LS Contribution 382.95 15.07 5.77 5.77 Total: -1.00 -32.33 382.95 -7.33 -39.67 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -6.60 Total: 19.24 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -2.06 Total: 6.26 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: 0.42 Total: -70.16 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.16 Total: -17.63 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.33 -7.33 -39.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677306925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.351 kcal (2) G-P(sol) polarization free energy of solvation -32.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds