Wall clock time and date at job start Tue Mar 31 2020 17:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47320 * 240.00148 * 2 1 3 5 5 C 1.53004 * 109.47400 * 119.99959 * 2 1 3 6 6 H 1.08997 * 109.47405 * 180.02562 * 5 2 1 7 7 C 1.53008 * 109.46881 * 300.00359 * 5 2 1 8 8 N 1.46497 * 109.46726 * 174.99836 * 7 5 2 9 9 C 1.36942 * 119.99631 * 180.02562 * 8 7 5 10 10 H 1.07996 * 120.00232 * 359.97438 * 9 8 7 11 11 C 1.38810 * 119.99694 * 179.97438 * 9 8 7 12 12 N 1.31612 * 120.00424 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99747 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47123 * 60.00078 * 13 11 9 15 15 H 1.48499 * 109.47238 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47255 * 300.00269 * 13 11 9 17 17 N 1.46495 * 109.46808 * 59.99923 * 5 2 1 18 18 C 1.34774 * 119.99953 * 85.00635 * 17 5 2 19 19 O 1.21503 * 120.00209 * 359.97438 * 18 17 5 20 20 C 1.48234 * 120.00008 * 179.97438 * 18 17 5 21 21 C 1.39626 * 119.65307 * 180.27155 * 20 18 17 22 22 C 1.38541 * 119.24818 * 180.23058 * 21 20 18 23 23 C 1.38589 * 118.54913 * 359.50256 * 22 21 20 24 24 C 1.39590 * 119.24721 * 0.25273 * 23 22 21 25 25 C 1.48217 * 119.65122 * 179.97438 * 24 23 22 26 26 N 1.34776 * 120.00034 * 180.02562 * 25 24 23 27 27 O 1.21508 * 120.00338 * 0.02562 * 25 24 23 28 28 N 1.32337 * 119.65347 * 359.97438 * 20 18 17 29 29 H 1.08996 * 109.46976 * 300.00011 * 1 2 3 30 30 H 1.09002 * 109.47191 * 60.00034 * 1 2 3 31 31 H 1.08997 * 109.46766 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46849 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47045 * 300.00056 * 3 2 1 34 34 H 1.08997 * 109.46682 * 59.99995 * 3 2 1 35 35 H 1.08997 * 109.47227 * 299.99749 * 4 2 1 36 36 H 1.08992 * 109.47091 * 59.99965 * 4 2 1 37 37 H 1.09002 * 109.47305 * 179.97438 * 4 2 1 38 38 H 1.09003 * 109.46652 * 294.99733 * 7 5 2 39 39 H 1.08993 * 109.46881 * 54.99676 * 7 5 2 40 40 H 0.96995 * 120.00290 * 359.97438 * 8 7 5 41 41 H 0.97005 * 120.00538 * 179.97438 * 12 11 9 42 42 H 0.96999 * 120.00355 * 264.99941 * 17 5 2 43 43 H 1.08010 * 120.37871 * 0.02562 * 21 20 18 44 44 H 1.08002 * 120.72910 * 179.78326 * 22 21 20 45 45 H 1.08007 * 120.37338 * 180.23181 * 23 22 21 46 46 H 0.97005 * 120.00104 * 359.97438 * 26 25 24 47 47 H 0.96999 * 120.00143 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0401 -0.7212 1.2493 6 1 3.1300 -0.7209 1.2495 7 6 1.5300 0.0000 2.4985 8 7 1.9176 -0.7566 3.6916 9 6 1.5680 -0.3010 4.9348 10 1 1.0069 0.6163 5.0357 11 6 1.9348 -1.0182 6.0652 12 7 2.6181 -2.1363 5.9423 13 14 1.4585 -0.3963 7.7611 14 1 -0.0206 -0.3059 7.8578 15 1 1.9650 -1.3361 8.7933 16 1 2.0519 0.9472 7.9804 17 7 1.5517 -2.1024 1.2492 18 6 2.2286 -3.0564 0.5798 19 8 3.2435 -2.7709 -0.0241 20 6 1.7347 -4.4541 0.5802 21 6 2.4447 -5.4378 -0.1110 22 6 1.9730 -6.7404 -0.1090 23 6 0.8116 -7.0232 0.5923 24 6 0.1539 -5.9929 1.2664 25 6 -1.0892 -6.2852 2.0187 26 7 -1.7302 -5.2956 2.6717 27 8 -1.5305 -7.4169 2.0469 28 7 0.6288 -4.7576 1.2406 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6768 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1391 37 1 3.1300 -0.7208 -1.2495 38 1 1.9646 0.9986 2.5444 39 1 0.4437 0.0782 2.4548 40 1 2.4211 -1.5806 3.6010 41 1 2.8748 -2.6373 6.7323 42 1 0.7413 -2.3304 1.7311 43 1 3.3496 -5.1855 -0.6440 44 1 2.5013 -7.5195 -0.6386 45 1 0.4197 -8.0294 0.6167 46 1 -1.3777 -4.3921 2.6495 47 1 -2.5435 -5.4869 3.1644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677306925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:41 Heat of formation + Delta-G solvation = -56.841323 kcal Electronic energy + Delta-G solvation = -29817.159865 eV Core-core repulsion = 25805.959969 eV Total energy + Delta-G solvation = -4011.199897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.03490 -41.04434 -39.81273 -38.51797 -36.16789 -35.04304 -34.67623 -33.51738 -32.91280 -32.47725 -29.35477 -28.13368 -27.90498 -26.17859 -25.95489 -25.14196 -23.14890 -22.33589 -21.57330 -19.88563 -19.60580 -18.88736 -18.65202 -17.95103 -17.18487 -17.08134 -16.93906 -16.52263 -16.33342 -16.16055 -15.67580 -15.41434 -15.33709 -15.00191 -14.84360 -14.76309 -14.32714 -14.27959 -14.07215 -13.65410 -13.17467 -13.04885 -13.00325 -12.90903 -12.70160 -12.51314 -12.35303 -12.21603 -12.03269 -11.94499 -11.73801 -11.61252 -11.27976 -11.18665 -11.10518 -10.89296 -10.78505 -10.69718 -10.37854 -9.87472 -8.95762 -7.90956 -5.19747 -0.61888 -0.18254 1.38965 1.49200 1.51146 1.57145 1.92033 2.07070 2.29782 2.57806 2.81514 2.91142 3.43312 3.62349 3.68908 3.80474 3.85428 3.88485 3.92467 4.06804 4.27086 4.33659 4.36627 4.41256 4.48342 4.66373 4.85121 4.87021 4.89957 4.92573 4.97300 4.99331 5.09263 5.11220 5.18136 5.26740 5.33783 5.37461 5.45266 5.53192 5.57575 5.64329 5.72872 6.14106 6.28713 6.37753 6.64386 7.13242 7.17637 7.36692 8.11092 8.34491 9.31477 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007545 B = 0.004870 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3710.114440 B = 5747.564256 C = 8106.753105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 C -0.139 4.139 4 C -0.121 4.121 5 C 0.155 3.845 6 H 0.061 0.939 7 C 0.144 3.856 8 N -0.741 5.741 9 C -0.239 4.239 10 H 0.079 0.921 11 C -0.071 4.071 12 N -0.967 5.967 13 Si 0.969 3.031 14 H -0.275 1.275 15 H -0.302 1.302 16 H -0.281 1.281 17 N -0.683 5.683 18 C 0.568 3.432 19 O -0.555 6.555 20 C 0.062 3.938 21 C -0.090 4.090 22 C -0.069 4.069 23 C -0.089 4.089 24 C 0.054 3.946 25 C 0.579 3.421 26 N -0.818 5.818 27 O -0.570 6.570 28 N -0.436 5.436 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.039 0.961 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.040 0.960 39 H 0.044 0.956 40 H 0.372 0.628 41 H 0.248 0.752 42 H 0.412 0.588 43 H 0.164 0.836 44 H 0.194 0.806 45 H 0.168 0.832 46 H 0.417 0.583 47 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.717 -3.799 -16.733 18.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.072 4.072 3 C -0.196 4.196 4 C -0.179 4.179 5 C 0.050 3.950 6 H 0.079 0.921 7 C 0.018 3.982 8 N -0.384 5.384 9 C -0.370 4.370 10 H 0.097 0.903 11 C -0.264 4.264 12 N -0.617 5.617 13 Si 0.798 3.202 14 H -0.201 1.201 15 H -0.228 1.228 16 H -0.207 1.207 17 N -0.332 5.332 18 C 0.354 3.646 19 O -0.434 6.434 20 C -0.079 4.079 21 C -0.111 4.111 22 C -0.094 4.094 23 C -0.110 4.110 24 C -0.087 4.087 25 C 0.362 3.638 26 N -0.381 5.381 27 O -0.449 6.449 28 N -0.151 5.151 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.204 0.796 41 H 0.056 0.944 42 H 0.248 0.752 43 H 0.182 0.818 44 H 0.211 0.789 45 H 0.186 0.814 46 H 0.249 0.751 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -5.696 -3.503 -16.644 17.937 hybrid contribution 0.152 -0.442 1.397 1.473 sum -5.544 -3.945 -15.247 16.696 Atomic orbital electron populations 1.21874 0.93289 1.01764 1.02519 1.20866 0.96866 0.95908 0.93542 1.21880 1.00854 0.94112 1.02805 1.21785 1.00496 0.99159 0.96426 1.21221 0.98315 0.80377 0.95064 0.92052 1.21231 0.98123 0.94385 0.84462 1.42512 1.66808 1.27685 1.01390 1.19553 1.27618 1.05189 0.84673 0.90331 1.25477 1.01784 0.97869 1.01256 1.69824 1.45177 1.17929 1.28813 0.85286 0.78012 0.76933 0.79936 1.20140 1.22843 1.20690 1.45724 1.28784 1.07992 1.50671 1.17976 0.83303 0.84258 0.79112 1.90750 1.25280 1.82010 1.45312 1.21173 0.93332 0.95034 0.98316 1.22584 0.99986 0.92929 0.95558 1.22089 0.94319 0.96648 0.96335 1.22597 0.94442 1.01013 0.92956 1.21160 0.97042 0.90084 1.00427 1.17939 0.82806 0.84573 0.78473 1.43602 1.29539 1.12579 1.52346 1.90794 1.67718 1.22248 1.64140 1.67245 1.11904 1.21117 1.14830 0.92054 0.91210 0.93211 0.93184 0.90659 0.92082 0.94216 0.91836 0.93594 0.94271 0.93820 0.79570 0.94373 0.75203 0.81838 0.78875 0.81429 0.75148 0.75275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 7.97 71.98 0.57 -2.44 16 2 C -0.07 -1.76 0.62 -52.18 -0.03 -1.80 16 3 C -0.14 -3.12 8.12 71.98 0.58 -2.53 16 4 C -0.12 -3.09 7.00 71.98 0.50 -2.59 16 5 C 0.16 4.99 1.69 45.00 0.08 5.07 16 6 H 0.06 2.32 7.58 -2.39 -0.02 2.30 16 7 C 0.14 5.28 5.10 86.38 0.44 5.72 16 8 N -0.74 -35.65 5.43 -343.45 -1.87 -37.52 16 9 C -0.24 -12.68 9.99 84.03 0.84 -11.84 16 10 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 11 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 12 N -0.97 -58.31 13.06 21.65 0.28 -58.03 16 13 Si 0.97 45.15 29.55 68.60 2.03 47.17 16 14 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 15 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 17 N -0.68 -21.69 3.63 -445.04 -1.62 -23.31 16 18 C 0.57 18.35 6.17 86.90 0.54 18.88 16 19 O -0.55 -19.68 13.44 -3.72 -0.05 -19.73 16 20 C 0.06 1.75 6.75 42.06 0.28 2.04 16 21 C -0.09 -1.95 9.63 22.68 0.22 -1.74 16 22 C -0.07 -1.10 10.16 22.43 0.23 -0.87 16 23 C -0.09 -1.79 9.63 22.68 0.22 -1.57 16 24 C 0.05 1.38 6.75 42.04 0.28 1.66 16 25 C 0.58 15.54 8.09 86.90 0.70 16.24 16 26 N -0.82 -18.13 8.86 -175.35 -1.55 -19.69 16 27 O -0.57 -17.81 17.16 -3.74 -0.06 -17.88 16 28 N -0.44 -12.05 8.71 -174.09 -1.52 -13.56 16 29 H 0.06 1.37 6.32 -2.39 -0.02 1.36 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.13 7.60 -2.39 -0.02 1.11 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.39 6.54 -2.39 -0.02 1.38 16 35 H 0.04 1.09 5.77 -2.39 -0.01 1.08 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.04 1.32 7.53 -2.39 -0.02 1.30 16 38 H 0.04 1.44 6.71 -2.39 -0.02 1.42 16 39 H 0.04 1.51 6.17 -2.39 -0.01 1.49 16 40 H 0.37 19.75 7.33 -92.71 -0.68 19.08 16 41 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 42 H 0.41 13.09 7.93 -92.71 -0.74 12.36 16 43 H 0.16 3.20 7.64 -2.91 -0.02 3.18 16 44 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 45 H 0.17 2.82 7.64 -2.91 -0.02 2.79 16 46 H 0.42 9.13 8.16 -92.70 -0.76 8.37 16 47 H 0.41 7.56 8.93 -92.71 -0.83 6.73 16 Total: -1.00 -70.40 382.95 -0.38 -70.78 By element: Atomic # 1 Polarization: 52.99 SS G_CDS: -1.95 Total: 51.04 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 5.92 Total: 20.72 kcal Atomic # 7 Polarization: -145.84 SS G_CDS: -6.27 Total: -152.10 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -0.11 Total: -37.61 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -70.40 -0.38 -70.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677306925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.937 kcal (2) G-P(sol) polarization free energy of solvation -70.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds