Wall clock time and date at job start Tue Mar 31 2020 18:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50709 * 109.47146 * 2 1 4 4 C 1.32993 * 119.99550 * 94.99966 * 3 2 1 5 5 C 1.47109 * 119.99760 * 172.05613 * 4 3 2 6 6 O 1.21614 * 119.99881 * 353.61917 * 5 4 3 7 7 N 1.34770 * 119.99808 * 173.62038 * 5 4 3 8 8 C 1.46504 * 119.99841 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47504 * 180.02562 * 8 7 5 10 10 N 1.31799 * 119.08851 * 269.98158 * 9 8 7 11 11 C 1.32793 * 120.71239 * 179.97438 * 10 9 8 12 12 O 1.35526 * 120.50995 * 179.97438 * 11 10 9 13 13 C 1.39418 * 118.97975 * 359.74589 * 11 10 9 14 14 C 1.38190 * 118.34582 * 0.51214 * 13 11 10 15 15 C 1.50705 * 120.40917 * 179.76614 * 14 13 11 16 16 N 1.46494 * 109.47141 * 94.72163 * 15 14 13 17 17 C 1.36938 * 119.99815 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00261 * 359.72059 * 17 16 15 19 19 C 1.38819 * 120.00081 * 179.97438 * 17 16 15 20 20 N 1.31619 * 119.99402 * 359.97438 * 19 17 16 21 21 Si 1.86790 * 120.00005 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47427 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47270 * 120.00036 * 21 19 17 24 24 H 1.48505 * 109.47073 * 240.00114 * 21 19 17 25 25 N 1.31753 * 119.09702 * 89.99434 * 9 8 7 26 26 C 1.50695 * 120.00011 * 274.99845 * 3 2 1 27 27 C 1.52998 * 109.47070 * 272.76084 * 26 3 2 28 28 H 1.08999 * 109.47071 * 59.99900 * 1 2 3 29 29 H 1.08997 * 109.47281 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47416 * 299.99928 * 1 2 3 31 31 H 1.09002 * 109.47416 * 240.00072 * 2 1 3 32 32 H 1.08999 * 109.47071 * 120.00100 * 2 1 3 33 33 H 1.07995 * 120.00469 * 352.04832 * 4 3 2 34 34 H 0.97002 * 120.00591 * 359.97438 * 7 5 4 35 35 H 1.09002 * 109.46965 * 59.99884 * 8 7 5 36 36 H 1.09007 * 109.46877 * 300.00353 * 8 7 5 37 37 H 0.96702 * 113.99249 * 89.99960 * 12 11 10 38 38 H 1.08004 * 120.82947 * 180.27125 * 13 11 10 39 39 H 1.09001 * 109.46898 * 334.71414 * 15 14 13 40 40 H 1.09002 * 109.46719 * 214.71745 * 15 14 13 41 41 H 0.97004 * 120.00385 * 359.97438 * 16 15 14 42 42 H 0.97010 * 119.99369 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.47186 * 32.76017 * 26 3 2 44 44 H 1.09006 * 109.46945 * 152.75878 * 26 3 2 45 45 H 1.09000 * 109.47062 * 300.00009 * 27 26 3 46 46 H 1.08997 * 109.47650 * 60.00161 * 27 26 3 47 47 H 1.08998 * 109.46921 * 180.02562 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3486 2.0143 1.1474 5 6 3.0013 3.3326 1.1382 6 8 3.3567 3.8278 0.0859 7 7 3.2055 3.9915 2.2960 8 6 3.8560 5.3042 2.2869 9 6 3.9640 5.8212 3.6983 10 7 2.9823 6.5499 4.1906 11 6 3.0436 7.0215 5.4304 12 8 2.0320 7.7709 5.9323 13 6 4.1624 6.7299 6.2095 14 6 5.1702 5.9670 5.6509 15 6 6.4026 5.6285 6.4494 16 7 6.2317 4.3166 7.0786 17 6 7.2292 3.7967 7.8596 18 1 8.1437 4.3517 8.0080 19 6 7.0671 2.5538 8.4563 20 7 5.9543 1.8755 8.2717 21 14 8.4280 1.8443 9.5209 22 1 9.5661 2.7968 9.5694 23 1 7.9139 1.6177 10.8955 24 1 8.8857 0.5544 8.9447 25 7 5.0371 5.5325 4.4060 26 6 2.1763 2.1692 -1.3001 27 6 3.5553 1.8882 -1.9002 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.1262 1.5285 2.0859 34 1 2.9217 3.5967 3.1354 35 1 3.2650 5.9984 1.6895 36 1 4.8534 5.2124 1.8566 37 1 1.3440 7.2562 6.3759 38 1 4.2414 7.0945 7.2231 39 1 6.5551 6.3841 7.2201 40 1 7.2687 5.6041 5.7880 41 1 5.4116 3.8166 6.9427 42 1 5.8412 1.0067 8.6884 43 1 1.4037 1.8412 -1.9956 44 1 2.0705 3.2386 -1.1174 45 1 4.3279 2.2162 -1.2047 46 1 3.6612 0.8189 -2.0829 47 1 3.6596 2.4299 -2.8403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691904111.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:18 Heat of formation + Delta-G solvation = -5.070384 kcal Electronic energy + Delta-G solvation = -27838.970858 eV Core-core repulsion = 23830.015918 eV Total energy + Delta-G solvation = -4008.954940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.26009 -39.93923 -37.82649 -36.85667 -35.57983 -34.57371 -33.14447 -32.07372 -31.85668 -30.78228 -30.16591 -27.56489 -26.58806 -24.64019 -23.51701 -23.44434 -22.84637 -21.58047 -20.96842 -19.03971 -18.62057 -17.79370 -17.30111 -17.14914 -16.18395 -15.89074 -15.41572 -15.23920 -15.03699 -14.95731 -14.71405 -14.09715 -13.94952 -13.87681 -13.51993 -13.35518 -13.18045 -13.00215 -12.76225 -12.69591 -12.66366 -12.18414 -12.13336 -11.93264 -11.90230 -11.50293 -11.09495 -11.04074 -10.90834 -10.84206 -10.64508 -10.40780 -10.14434 -9.87226 -9.68357 -9.40789 -9.28507 -9.20156 -9.02601 -8.97141 -7.09524 -5.88087 -3.19088 0.75767 0.98770 1.25945 2.97932 3.24855 3.33930 3.37667 3.43589 3.45688 3.72401 3.90046 4.33145 4.49450 4.53725 4.56558 4.87069 4.90942 5.01152 5.03704 5.12679 5.20059 5.28869 5.35646 5.38256 5.44995 5.45802 5.56394 5.57726 5.59557 5.64892 5.72097 5.83909 5.89904 5.92533 6.04353 6.17425 6.23697 6.31522 6.33454 6.44050 6.44706 6.49114 7.00599 7.26795 7.46480 7.59569 8.09115 8.21000 8.27776 9.40410 9.90764 10.26542 11.34372 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008391 B = 0.002833 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3336.288116 B = 9880.160350 C =11989.014319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.023 4.023 4 C -0.227 4.227 5 C 0.551 3.449 6 O -0.537 6.537 7 N -0.717 5.717 8 C 0.198 3.802 9 C 0.316 3.684 10 N -0.533 5.533 11 C 0.353 3.647 12 O -0.477 6.477 13 C -0.218 4.218 14 C 0.200 3.800 15 C 0.196 3.804 16 N -0.722 5.722 17 C -0.243 4.243 18 H 0.075 0.925 19 C -0.010 4.010 20 N -0.931 5.931 21 Si 0.911 3.089 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.290 1.290 25 N -0.492 5.492 26 C -0.105 4.105 27 C -0.132 4.132 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.127 0.873 34 H 0.404 0.596 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.407 0.593 38 H 0.156 0.844 39 H 0.045 0.955 40 H 0.049 0.951 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.058 0.942 44 H 0.103 0.897 45 H 0.064 0.936 46 H 0.043 0.957 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.052 2.508 -14.180 18.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.136 4.136 3 C -0.025 4.025 4 C -0.248 4.248 5 C 0.341 3.659 6 O -0.417 6.417 7 N -0.368 5.368 8 C 0.073 3.927 9 C 0.047 3.953 10 N -0.259 5.259 11 C 0.166 3.834 12 O -0.284 6.284 13 C -0.242 4.242 14 C 0.055 3.945 15 C 0.068 3.932 16 N -0.367 5.367 17 C -0.374 4.374 18 H 0.093 0.907 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.742 3.258 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.217 1.217 25 N -0.208 5.208 26 C -0.141 4.141 27 C -0.189 4.189 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.145 0.855 34 H 0.238 0.762 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.266 0.734 38 H 0.174 0.826 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.218 0.782 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.121 0.879 45 H 0.083 0.917 46 H 0.062 0.938 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.403 3.049 -15.896 19.799 hybrid contribution -0.078 -0.778 2.333 2.460 sum -11.481 2.271 -13.564 17.915 Atomic orbital electron populations 1.21721 0.94287 1.02043 1.02371 1.20774 0.96598 0.92710 1.03481 1.22538 0.90182 0.94636 0.95118 1.22345 1.06983 0.96357 0.99109 1.18489 0.79122 0.85220 0.83035 1.90720 1.51592 1.69315 1.30077 1.45732 1.61707 1.19541 1.09868 1.19823 1.00118 0.84540 0.88233 1.22761 0.84987 0.91120 0.96470 1.67682 1.31599 1.12070 1.14502 1.19375 0.88625 0.87620 0.87765 1.84705 1.34874 1.33760 1.75103 1.22974 0.95991 1.02107 1.03130 1.22195 0.95469 0.87619 0.89217 1.19727 0.89982 0.90531 0.92962 1.42163 1.20429 1.15966 1.58134 1.19256 0.96220 1.00392 1.21521 0.90683 1.24772 0.97633 0.97206 1.01025 1.69681 1.25588 1.14330 1.48256 0.86057 0.80992 0.78922 0.79818 1.20390 1.21779 1.21713 1.68194 1.23639 1.21662 1.07289 1.21005 0.97835 1.02419 0.92885 1.21529 0.96745 1.00001 1.00632 0.92429 0.92148 0.92327 0.90330 0.90500 0.85524 0.76206 0.88862 0.88482 0.73392 0.82610 0.93750 0.93370 0.78157 0.93427 0.92313 0.87863 0.91660 0.93788 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 37.15 0.37 -0.62 16 2 C -0.10 -0.76 6.11 -27.88 -0.17 -0.93 16 3 C -0.02 -0.23 4.61 -101.17 -0.47 -0.69 16 4 C -0.23 -2.50 9.60 -37.80 -0.36 -2.86 16 5 C 0.55 7.26 7.60 -12.66 -0.10 7.16 16 6 O -0.54 -8.06 11.68 5.27 0.06 -8.00 16 7 N -0.72 -9.23 5.54 -62.67 -0.35 -9.58 16 8 C 0.20 2.68 6.10 -5.19 -0.03 2.65 16 9 C 0.32 4.84 7.01 -157.23 -1.10 3.73 16 10 N -0.53 -8.01 10.36 -10.78 -0.11 -8.12 16 11 C 0.35 5.00 7.83 -16.70 -0.13 4.87 16 12 O -0.48 -5.47 13.58 -18.27 -0.25 -5.72 16 13 C -0.22 -3.23 9.79 -39.16 -0.38 -3.61 16 14 C 0.20 3.45 6.18 -82.31 -0.51 2.95 16 15 C 0.20 3.80 6.61 -5.19 -0.03 3.77 16 16 N -0.72 -17.63 5.59 -61.08 -0.34 -17.98 16 17 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 18 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 21 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 N -0.49 -8.53 10.27 -7.05 -0.07 -8.60 16 26 C -0.10 -1.08 5.32 -27.89 -0.15 -1.23 16 27 C -0.13 -1.39 9.45 37.16 0.35 -1.04 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.58 8.04 -51.93 -0.42 0.16 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.40 4.96 8.45 -40.82 -0.34 4.62 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.10 1.35 8.14 -51.92 -0.42 0.92 16 37 H 0.41 2.64 9.06 45.56 0.41 3.05 16 38 H 0.16 2.03 8.06 -52.48 -0.42 1.61 16 39 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.38 10.05 7.66 -40.82 -0.31 9.74 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.10 1.28 5.57 -51.93 -0.29 0.99 16 45 H 0.06 0.83 6.91 -51.93 -0.36 0.47 16 46 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 399.99 15.07 6.03 6.03 Total: -1.00 -32.61 399.99 -8.64 -41.25 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -6.35 Total: 13.47 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: -2.96 Total: 7.07 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -0.15 Total: -70.83 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.19 Total: -13.72 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.61 -8.64 -41.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691904111.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.183 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds