Wall clock time and date at job start Tue Mar 31 2020 18:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50709 * 109.47146 * 2 1 4 4 C 1.32993 * 119.99550 * 94.99966 * 3 2 1 5 5 C 1.47109 * 119.99760 * 172.05613 * 4 3 2 6 6 O 1.21614 * 119.99881 * 353.61917 * 5 4 3 7 7 N 1.34770 * 119.99808 * 173.62038 * 5 4 3 8 8 C 1.46504 * 119.99841 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47504 * 180.02562 * 8 7 5 10 10 N 1.31799 * 119.08851 * 269.98158 * 9 8 7 11 11 C 1.32793 * 120.71239 * 179.97438 * 10 9 8 12 12 O 1.35526 * 120.50995 * 179.97438 * 11 10 9 13 13 C 1.39418 * 118.97975 * 359.74589 * 11 10 9 14 14 C 1.38190 * 118.34582 * 0.51214 * 13 11 10 15 15 C 1.50705 * 120.40917 * 179.76614 * 14 13 11 16 16 N 1.46494 * 109.47141 * 94.72163 * 15 14 13 17 17 C 1.36938 * 119.99815 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00261 * 359.72059 * 17 16 15 19 19 C 1.38819 * 120.00081 * 179.97438 * 17 16 15 20 20 N 1.31619 * 119.99402 * 359.97438 * 19 17 16 21 21 Si 1.86790 * 120.00005 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47427 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47270 * 120.00036 * 21 19 17 24 24 H 1.48505 * 109.47073 * 240.00114 * 21 19 17 25 25 N 1.31753 * 119.09702 * 89.99434 * 9 8 7 26 26 C 1.50695 * 120.00011 * 274.99845 * 3 2 1 27 27 C 1.52998 * 109.47070 * 272.76084 * 26 3 2 28 28 H 1.08999 * 109.47071 * 59.99900 * 1 2 3 29 29 H 1.08997 * 109.47281 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47416 * 299.99928 * 1 2 3 31 31 H 1.09002 * 109.47416 * 240.00072 * 2 1 3 32 32 H 1.08999 * 109.47071 * 120.00100 * 2 1 3 33 33 H 1.07995 * 120.00469 * 352.04832 * 4 3 2 34 34 H 0.97002 * 120.00591 * 359.97438 * 7 5 4 35 35 H 1.09002 * 109.46965 * 59.99884 * 8 7 5 36 36 H 1.09007 * 109.46877 * 300.00353 * 8 7 5 37 37 H 0.96702 * 113.99249 * 89.99960 * 12 11 10 38 38 H 1.08004 * 120.82947 * 180.27125 * 13 11 10 39 39 H 1.09001 * 109.46898 * 334.71414 * 15 14 13 40 40 H 1.09002 * 109.46719 * 214.71745 * 15 14 13 41 41 H 0.97004 * 120.00385 * 359.97438 * 16 15 14 42 42 H 0.97010 * 119.99369 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.47186 * 32.76017 * 26 3 2 44 44 H 1.09006 * 109.46945 * 152.75878 * 26 3 2 45 45 H 1.09000 * 109.47062 * 300.00009 * 27 26 3 46 46 H 1.08997 * 109.47650 * 60.00161 * 27 26 3 47 47 H 1.08998 * 109.46921 * 180.02562 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3486 2.0143 1.1474 5 6 3.0013 3.3326 1.1382 6 8 3.3567 3.8278 0.0859 7 7 3.2055 3.9915 2.2960 8 6 3.8560 5.3042 2.2869 9 6 3.9640 5.8212 3.6983 10 7 2.9823 6.5499 4.1906 11 6 3.0436 7.0215 5.4304 12 8 2.0320 7.7709 5.9323 13 6 4.1624 6.7299 6.2095 14 6 5.1702 5.9670 5.6509 15 6 6.4026 5.6285 6.4494 16 7 6.2317 4.3166 7.0786 17 6 7.2292 3.7967 7.8596 18 1 8.1437 4.3517 8.0080 19 6 7.0671 2.5538 8.4563 20 7 5.9543 1.8755 8.2717 21 14 8.4280 1.8443 9.5209 22 1 9.5661 2.7968 9.5694 23 1 7.9139 1.6177 10.8955 24 1 8.8857 0.5544 8.9447 25 7 5.0371 5.5325 4.4060 26 6 2.1763 2.1692 -1.3001 27 6 3.5553 1.8882 -1.9002 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.1262 1.5285 2.0859 34 1 2.9217 3.5967 3.1354 35 1 3.2650 5.9984 1.6895 36 1 4.8534 5.2124 1.8566 37 1 1.3440 7.2562 6.3759 38 1 4.2414 7.0945 7.2231 39 1 6.5551 6.3841 7.2201 40 1 7.2687 5.6041 5.7880 41 1 5.4116 3.8166 6.9427 42 1 5.8412 1.0067 8.6884 43 1 1.4037 1.8412 -1.9956 44 1 2.0705 3.2386 -1.1174 45 1 4.3279 2.2162 -1.2047 46 1 3.6612 0.8189 -2.0829 47 1 3.6596 2.4299 -2.8403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691904111.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:17 Heat of formation + Delta-G solvation = -30.448666 kcal Electronic energy + Delta-G solvation = -27840.071343 eV Core-core repulsion = 23830.015918 eV Total energy + Delta-G solvation = -4010.055425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.45815 -40.94772 -38.85117 -37.74439 -37.04374 -35.83277 -34.64561 -33.19412 -32.75963 -32.41887 -31.10633 -28.66803 -28.21121 -25.46369 -25.24845 -24.19229 -24.06595 -22.95645 -21.96216 -20.09485 -19.58554 -19.39559 -18.78559 -18.13168 -17.19792 -17.03248 -16.76770 -16.49463 -16.26158 -15.94920 -15.78088 -15.50120 -15.32281 -14.84742 -14.75645 -14.51068 -14.28155 -14.15917 -14.00869 -13.75206 -13.58706 -13.44280 -13.17642 -12.96115 -12.91073 -12.80226 -12.59300 -12.16175 -12.08257 -11.97837 -11.87214 -11.78270 -11.59300 -11.53209 -11.03091 -10.78974 -10.51756 -10.43188 -10.22759 -9.91806 -9.08399 -7.97400 -5.28250 -0.41908 -0.23155 0.38964 1.49755 1.50689 1.60500 1.90372 2.25875 2.28141 2.51528 2.58573 2.74005 3.11794 3.37969 3.68107 3.78122 3.80720 3.87743 4.08820 4.11404 4.16674 4.24063 4.30821 4.41778 4.45697 4.46852 4.56230 4.63072 4.70412 4.78193 4.79966 4.87835 4.97632 5.02177 5.09086 5.11237 5.13952 5.31803 5.37704 5.45314 5.49333 5.59326 5.66579 5.80239 6.21818 6.44829 6.45403 6.87617 7.18979 7.29840 7.95769 8.21916 9.25965 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008391 B = 0.002833 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3336.288116 B = 9880.160350 C =11989.014319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.011 4.011 4 C -0.246 4.246 5 C 0.546 3.454 6 O -0.560 6.560 7 N -0.715 5.715 8 C 0.204 3.796 9 C 0.318 3.682 10 N -0.536 5.536 11 C 0.364 3.636 12 O -0.474 6.474 13 C -0.212 4.212 14 C 0.183 3.817 15 C 0.198 3.802 16 N -0.733 5.733 17 C -0.245 4.245 18 H 0.083 0.917 19 C -0.071 4.071 20 N -0.967 5.967 21 Si 0.976 3.024 22 H -0.264 1.264 23 H -0.292 1.292 24 H -0.296 1.296 25 N -0.516 5.516 26 C -0.105 4.105 27 C -0.128 4.128 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.140 0.860 34 H 0.406 0.594 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.430 0.570 38 H 0.175 0.825 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.373 0.627 42 H 0.252 0.748 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.038 0.962 46 H 0.059 0.941 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.805 2.542 -14.178 19.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.134 4.134 3 C -0.013 4.013 4 C -0.266 4.266 5 C 0.338 3.662 6 O -0.442 6.442 7 N -0.367 5.367 8 C 0.078 3.922 9 C 0.049 3.951 10 N -0.263 5.263 11 C 0.176 3.824 12 O -0.285 6.285 13 C -0.236 4.236 14 C 0.039 3.961 15 C 0.071 3.929 16 N -0.377 5.377 17 C -0.376 4.376 18 H 0.101 0.899 19 C -0.263 4.263 20 N -0.617 5.617 21 Si 0.804 3.196 22 H -0.188 1.188 23 H -0.219 1.219 24 H -0.223 1.223 25 N -0.233 5.233 26 C -0.142 4.142 27 C -0.186 4.186 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.157 0.843 34 H 0.241 0.759 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.294 0.706 38 H 0.193 0.807 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.205 0.795 42 H 0.061 0.939 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.057 0.943 46 H 0.078 0.922 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.159 3.120 -15.881 20.243 hybrid contribution 0.080 -0.684 2.254 2.357 sum -12.079 2.436 -13.627 18.372 Atomic orbital electron populations 1.21713 0.93289 1.02921 1.02293 1.20837 0.97340 0.90989 1.04261 1.22813 0.88492 0.95559 0.94477 1.22389 1.08340 0.95662 1.00258 1.18898 0.78879 0.85834 0.82612 1.90713 1.52701 1.70029 1.30758 1.45730 1.61579 1.19312 1.10055 1.19753 0.99936 0.85046 0.87445 1.22897 0.84552 0.90992 0.96695 1.67769 1.31312 1.12144 1.15041 1.19440 0.89032 0.86624 0.87324 1.84672 1.34927 1.33734 1.75139 1.23078 0.95297 1.01315 1.03885 1.21905 0.95593 0.89194 0.89401 1.19762 0.91068 0.88727 0.93331 1.42294 1.19460 1.17611 1.58289 1.19663 0.96752 1.00386 1.20792 0.89867 1.25575 0.99855 0.97940 1.02971 1.69828 1.27529 1.14555 1.49812 0.85047 0.78794 0.77931 0.77787 1.18817 1.21888 1.22309 1.68119 1.24836 1.22588 1.07804 1.20979 0.98365 1.01239 0.93642 1.21485 0.95953 1.01016 1.00122 0.92139 0.90804 0.92821 0.89094 0.90200 0.84256 0.75914 0.88257 0.89248 0.70616 0.80728 0.91672 0.94051 0.79531 0.93949 0.90190 0.90083 0.94328 0.92174 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.89 71.98 0.71 -0.94 16 2 C -0.10 -1.32 6.11 29.85 0.18 -1.14 16 3 C -0.01 -0.22 4.61 -17.61 -0.08 -0.30 16 4 C -0.25 -5.37 9.60 23.43 0.22 -5.15 16 5 C 0.55 14.70 7.60 86.57 0.66 15.36 16 6 O -0.56 -17.36 11.68 -4.08 -0.05 -17.41 16 7 N -0.72 -18.79 5.54 -470.43 -2.61 -21.39 16 8 C 0.20 5.61 6.10 85.63 0.52 6.13 16 9 C 0.32 9.70 7.01 138.76 0.97 10.67 16 10 N -0.54 -15.56 10.36 -300.69 -3.12 -18.68 16 11 C 0.36 9.65 7.83 84.83 0.66 10.31 16 12 O -0.47 -9.61 13.58 -88.30 -1.20 -10.81 16 13 C -0.21 -5.96 9.79 22.54 0.22 -5.74 16 14 C 0.18 6.25 6.18 42.45 0.26 6.51 16 15 C 0.20 7.61 6.61 85.64 0.57 8.18 16 16 N -0.73 -35.92 5.59 -347.17 -1.94 -37.86 16 17 C -0.24 -13.10 9.99 84.04 0.84 -12.26 16 18 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 19 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 20 N -0.97 -57.41 13.06 21.65 0.28 -57.13 16 21 Si 0.98 44.71 29.55 68.60 2.03 46.74 16 22 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 25 N -0.52 -18.03 10.27 -176.23 -1.81 -19.84 16 26 C -0.11 -2.11 5.32 29.85 0.16 -1.95 16 27 C -0.13 -2.64 9.45 71.98 0.68 -1.96 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.07 8.04 -2.39 -0.02 1.05 16 33 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 34 H 0.41 10.16 8.45 -92.71 -0.78 9.38 16 35 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 37 H 0.43 4.31 9.06 -74.06 -0.67 3.64 16 38 H 0.18 4.15 8.06 -2.91 -0.02 4.13 16 39 H 0.07 2.25 8.06 -2.39 -0.02 2.24 16 40 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.37 19.79 7.66 -92.71 -0.71 19.08 16 42 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 43 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.08 2.04 5.57 -2.38 -0.01 2.02 16 45 H 0.04 1.00 6.91 -2.39 -0.02 0.98 16 46 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -69.77 399.99 -2.51 -72.28 By element: Atomic # 1 Polarization: 41.00 SS G_CDS: -1.15 Total: 39.85 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: 7.05 Total: 24.25 kcal Atomic # 7 Polarization: -145.71 SS G_CDS: -9.19 Total: -154.90 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -1.25 Total: -28.22 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -69.77 -2.51 -72.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691904111.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.832 kcal (2) G-P(sol) polarization free energy of solvation -69.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds