Wall clock time and date at job start Tue Mar 31 2020 19:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46783 * 2 1 4 4 H 1.08997 * 109.47014 * 304.99763 * 3 2 1 5 5 C 1.52999 * 109.46680 * 184.99823 * 3 2 1 6 6 N 1.46498 * 109.47046 * 185.00230 * 5 3 2 7 7 C 1.34773 * 120.00242 * 180.02562 * 6 5 3 8 8 O 1.21592 * 120.00119 * 359.97438 * 7 6 5 9 9 C 1.47588 * 120.00505 * 179.97438 * 7 6 5 10 10 C 1.39756 * 120.06859 * 359.71848 * 9 7 6 11 11 C 1.37665 * 119.92363 * 179.74247 * 10 9 7 12 12 C 1.39135 * 120.07251 * 0.51101 * 11 10 9 13 13 N 1.39427 * 119.92609 * 179.74155 * 12 11 10 14 14 C 1.34776 * 120.00200 * 213.55742 * 13 12 11 15 15 O 1.21582 * 119.99829 * 5.31869 * 14 13 12 16 16 N 1.34777 * 120.00231 * 185.32389 * 14 13 12 17 17 C 1.46498 * 120.00297 * 179.97438 * 16 14 13 18 18 C 1.39137 * 120.14675 * 359.77079 * 12 11 10 19 19 C 1.37653 * 120.07799 * 359.96753 * 18 12 11 20 20 N 1.46499 * 109.47231 * 65.00005 * 3 2 1 21 21 C 1.36934 * 119.99637 * 274.99747 * 20 3 2 22 22 H 1.07998 * 120.00370 * 0.02562 * 21 20 3 23 23 C 1.38817 * 119.99612 * 180.02562 * 21 20 3 24 24 N 1.31623 * 120.00163 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99884 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47266 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47035 * 119.99679 * 25 23 21 28 28 H 1.48502 * 109.47149 * 239.99633 * 25 23 21 29 29 H 1.09000 * 109.47200 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47511 * 300.00245 * 1 2 3 31 31 H 1.09008 * 109.47164 * 60.00260 * 1 2 3 32 32 H 1.08996 * 109.47127 * 239.99840 * 2 1 3 33 33 H 1.08996 * 109.46757 * 119.99703 * 2 1 3 34 34 H 1.09001 * 109.47468 * 65.00288 * 5 3 2 35 35 H 1.09001 * 109.47274 * 305.00148 * 5 3 2 36 36 H 0.97006 * 119.99951 * 359.97438 * 6 5 3 37 37 H 1.08001 * 120.04246 * 359.97438 * 10 9 7 38 38 H 1.08003 * 119.96096 * 180.25789 * 11 10 9 39 39 H 0.97005 * 120.00099 * 33.54957 * 13 12 11 40 40 H 0.97001 * 119.99923 * 359.97438 * 16 14 13 41 41 H 1.08999 * 109.46877 * 300.00121 * 17 16 14 42 42 H 1.09009 * 109.47073 * 59.99427 * 17 16 14 43 43 H 1.08995 * 109.47320 * 179.97438 * 17 16 14 44 44 H 1.08003 * 119.95990 * 179.97438 * 18 12 11 45 45 H 1.07996 * 120.04231 * 179.97438 * 19 18 12 46 46 H 0.97005 * 119.99980 * 94.99687 * 20 3 2 47 47 H 0.97000 * 119.99876 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0059 7 6 5.3856 3.0631 -0.0867 8 8 6.1654 2.1461 -0.2586 9 6 5.8875 4.4458 0.0334 10 6 4.9921 5.5016 0.2252 11 6 5.4640 6.7895 0.3421 12 6 6.8297 7.0419 0.2591 13 7 7.3038 8.3482 0.3726 14 6 8.3916 8.7332 -0.3239 15 8 8.9019 7.9728 -1.1236 16 7 8.9137 9.9611 -0.1337 17 6 10.0964 10.3794 -0.8903 18 6 7.7233 5.9937 0.0623 19 6 7.2587 4.7029 -0.0501 20 7 1.6524 2.0975 1.2518 21 6 0.4155 2.6735 1.3687 22 1 -0.2743 2.6445 0.5383 23 6 0.0485 3.2946 2.5546 24 7 0.8891 3.3294 3.5669 25 14 -1.6385 4.0809 2.7139 26 1 -2.3878 3.9068 1.4437 27 1 -2.3844 3.4321 3.8221 28 1 -1.4842 5.5294 3.0025 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8499 1.0377 -1.0960 35 1 3.9953 0.8311 0.6660 36 1 3.4409 3.5484 0.1309 37 1 3.9315 5.3069 0.2853 38 1 4.7729 7.6054 0.4945 39 1 6.8507 8.9800 0.9527 40 1 8.5064 10.5679 0.5041 41 1 10.9243 9.7047 -0.6727 42 1 9.8745 10.3499 -1.9572 43 1 10.3702 11.3950 -0.6044 44 1 8.7828 6.1932 -0.0021 45 1 7.9527 3.8898 -0.2032 46 1 2.2719 2.1232 1.9978 47 1 0.6324 3.7631 4.3957 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698620517.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:06 Heat of formation + Delta-G solvation = -27.154177 kcal Electronic energy + Delta-G solvation = -28073.306463 eV Core-core repulsion = 24063.393898 eV Total energy + Delta-G solvation = -4009.912565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.95186 -39.70252 -38.18769 -36.64180 -35.10048 -34.89171 -33.72169 -32.39165 -30.96209 -30.27507 -29.65466 -27.83710 -26.83366 -24.10878 -23.39055 -22.90959 -22.06737 -21.28421 -20.18008 -19.79684 -19.01001 -18.12509 -17.60494 -16.99185 -16.10630 -15.69916 -15.50516 -15.31438 -14.91262 -14.74041 -14.48973 -14.28935 -14.00525 -13.73566 -13.58970 -13.33317 -13.14430 -13.01853 -12.80260 -12.68131 -12.52854 -12.39001 -12.10263 -11.43057 -11.25876 -10.98554 -10.91418 -10.73585 -10.66509 -10.43222 -10.34367 -10.18662 -10.00532 -9.61858 -9.57772 -9.52895 -8.97617 -8.96876 -8.62665 -8.15339 -7.04637 -5.83102 -3.12226 0.88030 1.43134 2.22611 2.68594 3.19559 3.36872 3.44106 3.45678 3.62068 3.75806 4.03965 4.52384 4.72774 4.83981 4.93054 5.07384 5.10929 5.32655 5.35005 5.41661 5.43339 5.45624 5.48393 5.57855 5.91494 5.93518 5.97153 5.99545 6.02121 6.04745 6.11795 6.20977 6.38459 6.44074 6.49017 6.54790 6.56912 6.59412 6.62167 6.90226 6.95510 7.04313 7.24400 7.47624 7.65601 7.99315 8.11722 8.34110 8.61963 9.46161 10.01615 10.37826 11.38653 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013434 B = 0.002546 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.726315 B =10993.826149 C =12694.625780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.162 3.838 4 H 0.054 0.946 5 C 0.115 3.885 6 N -0.707 5.707 7 C 0.555 3.445 8 O -0.554 6.554 9 C -0.146 4.146 10 C -0.057 4.057 11 C -0.154 4.154 12 C 0.183 3.817 13 N -0.684 5.684 14 C 0.701 3.299 15 O -0.567 6.567 16 N -0.747 5.747 17 C 0.105 3.895 18 C -0.133 4.133 19 C -0.041 4.041 20 N -0.722 5.722 21 C -0.236 4.236 22 H 0.074 0.926 23 C -0.012 4.012 24 N -0.928 5.928 25 Si 0.901 3.099 26 H -0.280 1.280 27 H -0.293 1.293 28 H -0.293 1.293 29 H 0.032 0.968 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.409 0.591 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.408 0.592 40 H 0.399 0.601 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.385 0.615 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.423 13.260 -6.495 19.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.052 3.948 4 H 0.072 0.928 5 C -0.010 4.010 6 N -0.359 5.359 7 C 0.343 3.657 8 O -0.434 6.434 9 C -0.150 4.150 10 C -0.076 4.076 11 C -0.175 4.175 12 C 0.088 3.912 13 N -0.331 5.331 14 C 0.401 3.599 15 O -0.443 6.443 16 N -0.402 5.402 17 C -0.039 4.039 18 C -0.154 4.154 19 C -0.060 4.060 20 N -0.364 5.364 21 C -0.367 4.367 22 H 0.092 0.908 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.733 3.267 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.051 0.949 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.247 0.753 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.244 0.756 40 H 0.233 0.767 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.156 0.844 45 H 0.155 0.845 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.321 12.044 -7.395 20.120 hybrid contribution -1.582 1.487 1.182 2.472 sum 12.739 13.531 -6.213 19.595 Atomic orbital electron populations 1.21771 0.95751 0.99618 1.03217 1.22064 0.96927 0.98393 1.00071 1.20577 0.89975 0.92839 0.91408 0.92816 1.21686 0.95546 0.82545 1.01199 1.45896 1.06932 1.10852 1.72173 1.18168 0.82540 0.88220 0.76797 1.90733 1.56194 1.45907 1.50564 1.20002 0.94460 0.93322 1.07240 1.21228 0.99963 0.91443 0.95002 1.20762 0.92873 0.97794 1.06034 1.17628 0.92314 0.82774 0.98508 1.42507 1.30373 1.12041 1.48187 1.15952 0.80405 0.82477 0.81076 1.90985 1.62550 1.52978 1.37802 1.44925 1.33154 1.15306 1.46847 1.21454 0.86322 0.99745 0.96383 1.21055 1.00302 0.90994 1.03003 1.21112 0.94337 0.96441 0.94137 1.42476 1.16765 1.65838 1.11319 1.19254 0.91938 1.27476 0.97987 0.90849 1.24732 0.97983 1.01682 0.96411 1.69677 1.35050 1.48980 1.03943 0.86209 0.84225 0.78844 0.77453 1.20574 1.21975 1.21981 0.94893 0.89689 0.94133 0.93813 0.92496 0.91766 0.91719 0.75324 0.84487 0.85095 0.75618 0.76722 0.92070 0.92109 0.90412 0.84377 0.84455 0.78054 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.18 37.16 0.34 -2.25 16 2 C -0.13 -2.30 5.61 -26.73 -0.15 -2.45 16 3 C 0.16 2.98 2.59 -67.93 -0.18 2.81 16 4 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 5 C 0.11 1.99 5.23 -4.04 -0.02 1.96 16 6 N -0.71 -12.17 5.34 -61.33 -0.33 -12.49 16 7 C 0.56 9.94 7.76 -12.45 -0.10 9.84 16 8 O -0.55 -11.38 16.34 5.28 0.09 -11.30 16 9 C -0.15 -2.28 5.88 -104.95 -0.62 -2.90 16 10 C -0.06 -0.78 9.53 -39.22 -0.37 -1.16 16 11 C -0.15 -1.82 9.94 -39.46 -0.39 -2.21 16 12 C 0.18 2.21 6.27 -83.74 -0.53 1.69 16 13 N -0.68 -6.16 5.32 -14.22 -0.08 -6.24 16 14 C 0.70 7.24 8.29 -86.92 -0.72 6.52 16 15 O -0.57 -8.29 14.02 5.29 0.07 -8.21 16 16 N -0.75 -4.64 5.72 -72.07 -0.41 -5.05 16 17 C 0.11 0.55 10.70 59.85 0.64 1.19 16 18 C -0.13 -1.82 8.62 -39.46 -0.34 -2.16 16 19 C -0.04 -0.60 9.58 -39.23 -0.38 -0.98 16 20 N -0.72 -16.18 4.51 -53.43 -0.24 -16.42 16 21 C -0.24 -5.85 7.75 -15.06 -0.12 -5.97 16 22 H 0.07 1.79 7.32 -52.49 -0.38 1.41 16 23 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 24 N -0.93 -26.25 13.06 55.49 0.72 -25.52 16 25 Si 0.90 21.10 29.55 -169.99 -5.02 16.08 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 1.77 5.99 -51.93 -0.31 1.46 16 31 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.41 6.94 6.16 -40.82 -0.25 6.69 16 37 H 0.14 1.83 6.39 -52.49 -0.34 1.50 16 38 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.41 2.19 8.83 -40.82 -0.36 1.83 16 40 H 0.40 1.15 8.85 -40.82 -0.36 0.79 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 43 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 44 H 0.14 1.92 6.41 -52.48 -0.34 1.58 16 45 H 0.14 2.01 7.64 -52.49 -0.40 1.61 16 46 H 0.39 9.52 7.80 -40.82 -0.32 9.20 16 47 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 390.75 15.07 5.89 5.89 Total: -1.00 -33.32 390.75 -9.17 -42.49 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -6.84 Total: 17.26 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -3.02 Total: 3.53 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: -0.33 Total: -65.73 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: 0.16 Total: -19.51 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.32 -9.17 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698620517.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.332 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds