Wall clock time and date at job start Tue Mar 31 2020 19:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46783 * 2 1 4 4 H 1.08997 * 109.47014 * 304.99763 * 3 2 1 5 5 C 1.52999 * 109.46680 * 184.99823 * 3 2 1 6 6 N 1.46498 * 109.47046 * 185.00230 * 5 3 2 7 7 C 1.34773 * 120.00242 * 180.02562 * 6 5 3 8 8 O 1.21592 * 120.00119 * 359.97438 * 7 6 5 9 9 C 1.47588 * 120.00505 * 179.97438 * 7 6 5 10 10 C 1.39756 * 120.06859 * 359.71848 * 9 7 6 11 11 C 1.37665 * 119.92363 * 179.74247 * 10 9 7 12 12 C 1.39135 * 120.07251 * 0.51101 * 11 10 9 13 13 N 1.39427 * 119.92609 * 179.74155 * 12 11 10 14 14 C 1.34776 * 120.00200 * 213.55742 * 13 12 11 15 15 O 1.21582 * 119.99829 * 5.31869 * 14 13 12 16 16 N 1.34777 * 120.00231 * 185.32389 * 14 13 12 17 17 C 1.46498 * 120.00297 * 179.97438 * 16 14 13 18 18 C 1.39137 * 120.14675 * 359.77079 * 12 11 10 19 19 C 1.37653 * 120.07799 * 359.96753 * 18 12 11 20 20 N 1.46499 * 109.47231 * 65.00005 * 3 2 1 21 21 C 1.36934 * 119.99637 * 274.99747 * 20 3 2 22 22 H 1.07998 * 120.00370 * 0.02562 * 21 20 3 23 23 C 1.38817 * 119.99612 * 180.02562 * 21 20 3 24 24 N 1.31623 * 120.00163 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99884 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47266 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47035 * 119.99679 * 25 23 21 28 28 H 1.48502 * 109.47149 * 239.99633 * 25 23 21 29 29 H 1.09000 * 109.47200 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47511 * 300.00245 * 1 2 3 31 31 H 1.09008 * 109.47164 * 60.00260 * 1 2 3 32 32 H 1.08996 * 109.47127 * 239.99840 * 2 1 3 33 33 H 1.08996 * 109.46757 * 119.99703 * 2 1 3 34 34 H 1.09001 * 109.47468 * 65.00288 * 5 3 2 35 35 H 1.09001 * 109.47274 * 305.00148 * 5 3 2 36 36 H 0.97006 * 119.99951 * 359.97438 * 6 5 3 37 37 H 1.08001 * 120.04246 * 359.97438 * 10 9 7 38 38 H 1.08003 * 119.96096 * 180.25789 * 11 10 9 39 39 H 0.97005 * 120.00099 * 33.54957 * 13 12 11 40 40 H 0.97001 * 119.99923 * 359.97438 * 16 14 13 41 41 H 1.08999 * 109.46877 * 300.00121 * 17 16 14 42 42 H 1.09009 * 109.47073 * 59.99427 * 17 16 14 43 43 H 1.08995 * 109.47320 * 179.97438 * 17 16 14 44 44 H 1.08003 * 119.95990 * 179.97438 * 18 12 11 45 45 H 1.07996 * 120.04231 * 179.97438 * 19 18 12 46 46 H 0.97005 * 119.99980 * 94.99687 * 20 3 2 47 47 H 0.97000 * 119.99876 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0059 7 6 5.3856 3.0631 -0.0867 8 8 6.1654 2.1461 -0.2586 9 6 5.8875 4.4458 0.0334 10 6 4.9921 5.5016 0.2252 11 6 5.4640 6.7895 0.3421 12 6 6.8297 7.0419 0.2591 13 7 7.3038 8.3482 0.3726 14 6 8.3916 8.7332 -0.3239 15 8 8.9019 7.9728 -1.1236 16 7 8.9137 9.9611 -0.1337 17 6 10.0964 10.3794 -0.8903 18 6 7.7233 5.9937 0.0623 19 6 7.2587 4.7029 -0.0501 20 7 1.6524 2.0975 1.2518 21 6 0.4155 2.6735 1.3687 22 1 -0.2743 2.6445 0.5383 23 6 0.0485 3.2946 2.5546 24 7 0.8891 3.3294 3.5669 25 14 -1.6385 4.0809 2.7139 26 1 -2.3878 3.9068 1.4437 27 1 -2.3844 3.4321 3.8221 28 1 -1.4842 5.5294 3.0025 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8499 1.0377 -1.0960 35 1 3.9953 0.8311 0.6660 36 1 3.4409 3.5484 0.1309 37 1 3.9315 5.3069 0.2853 38 1 4.7729 7.6054 0.4945 39 1 6.8507 8.9800 0.9527 40 1 8.5064 10.5679 0.5041 41 1 10.9243 9.7047 -0.6727 42 1 9.8745 10.3499 -1.9572 43 1 10.3702 11.3950 -0.6044 44 1 8.7828 6.1932 -0.0021 45 1 7.9527 3.8898 -0.2032 46 1 2.2719 2.1232 1.9978 47 1 0.6324 3.7631 4.3957 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698620517.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:05 Heat of formation + Delta-G solvation = -51.818598 kcal Electronic energy + Delta-G solvation = -28074.375993 eV Core-core repulsion = 24063.393898 eV Total energy + Delta-G solvation = -4010.982095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.84983 -40.95059 -39.31449 -38.19802 -35.93393 -35.71820 -35.27214 -34.13206 -32.04714 -31.54322 -31.18167 -29.24874 -27.54685 -25.69972 -24.70630 -24.13432 -23.30338 -22.15996 -21.60045 -21.15351 -19.77874 -19.39649 -18.96926 -18.42847 -17.23054 -16.94557 -16.71931 -16.26220 -16.18895 -15.86997 -15.73472 -15.63926 -15.28630 -15.10958 -14.74345 -14.57307 -14.43548 -14.19862 -14.10036 -13.80775 -13.62928 -13.50768 -13.05064 -12.96008 -12.78523 -12.75141 -12.36419 -12.28954 -12.05070 -11.84223 -11.63380 -11.60418 -11.35014 -11.30484 -11.02584 -10.83563 -10.24560 -10.04924 -10.03103 -9.15138 -8.94289 -7.83676 -5.10972 -0.23814 0.37243 1.49927 1.51488 1.54668 1.61827 1.71273 2.09244 2.26425 2.62760 2.88094 3.16762 3.49776 3.78572 3.81197 3.91814 3.93739 4.00090 4.28406 4.34568 4.40296 4.46118 4.49275 4.51304 4.58953 4.65709 4.76017 4.90232 4.95941 4.99446 5.07673 5.11897 5.15669 5.16197 5.23192 5.32566 5.33833 5.43995 5.49611 5.59807 5.65576 5.74553 5.84832 5.91745 6.36149 6.59599 6.89835 7.22080 7.38555 7.44191 8.15102 8.41026 9.39250 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013434 B = 0.002546 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.726315 B =10993.826149 C =12694.625780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.165 3.835 4 H 0.061 0.939 5 C 0.121 3.879 6 N -0.704 5.704 7 C 0.554 3.446 8 O -0.588 6.588 9 C -0.168 4.168 10 C -0.058 4.058 11 C -0.146 4.146 12 C 0.193 3.807 13 N -0.670 5.670 14 C 0.694 3.306 15 O -0.614 6.614 16 N -0.728 5.728 17 C 0.101 3.899 18 C -0.141 4.141 19 C -0.048 4.048 20 N -0.727 5.727 21 C -0.213 4.213 22 H 0.080 0.920 23 C -0.072 4.072 24 N -0.966 5.966 25 Si 0.958 3.042 26 H -0.267 1.267 27 H -0.305 1.305 28 H -0.296 1.296 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.411 0.589 37 H 0.140 0.860 38 H 0.164 0.836 39 H 0.428 0.572 40 H 0.419 0.581 41 H 0.049 0.951 42 H 0.048 0.952 43 H 0.117 0.883 44 H 0.133 0.867 45 H 0.129 0.871 46 H 0.372 0.628 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.795 15.179 -7.394 21.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.056 3.944 4 H 0.079 0.921 5 C -0.003 4.003 6 N -0.355 5.355 7 C 0.343 3.657 8 O -0.471 6.471 9 C -0.172 4.172 10 C -0.077 4.077 11 C -0.166 4.166 12 C 0.096 3.904 13 N -0.319 5.319 14 C 0.394 3.606 15 O -0.494 6.494 16 N -0.384 5.384 17 C -0.043 4.043 18 C -0.162 4.162 19 C -0.068 4.068 20 N -0.368 5.368 21 C -0.345 4.345 22 H 0.098 0.902 23 C -0.264 4.264 24 N -0.618 5.618 25 Si 0.789 3.211 26 H -0.192 1.192 27 H -0.233 1.233 28 H -0.224 1.224 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.249 0.751 37 H 0.158 0.842 38 H 0.182 0.818 39 H 0.268 0.732 40 H 0.256 0.744 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.135 0.865 44 H 0.151 0.849 45 H 0.147 0.853 46 H 0.204 0.796 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.663 14.019 -8.309 21.267 hybrid contribution -1.307 0.928 1.383 2.117 sum 12.356 14.948 -6.926 20.593 Atomic orbital electron populations 1.21697 0.95851 1.00585 1.01849 1.21990 0.96714 0.97327 1.01031 1.20711 0.90619 0.93386 0.89663 0.92136 1.21615 0.94599 0.82618 1.01506 1.45868 1.06875 1.10835 1.71889 1.18532 0.82328 0.88941 0.75935 1.90702 1.56882 1.47136 1.52340 1.19878 0.95018 0.92567 1.09739 1.21312 0.99796 0.91842 0.94769 1.21032 0.93162 0.97835 1.04588 1.17694 0.92292 0.83680 0.96736 1.42349 1.30160 1.11235 1.48132 1.16218 0.80387 0.83267 0.80722 1.90962 1.63863 1.54629 1.39902 1.44844 1.32851 1.14074 1.46618 1.21616 0.85368 1.01588 0.95729 1.21049 1.00452 0.91088 1.03567 1.21076 0.94079 0.96886 0.94721 1.42586 1.15846 1.66066 1.12260 1.19526 0.92382 1.25116 0.97499 0.90171 1.25350 1.00816 1.03561 0.96658 1.69820 1.36666 1.51013 1.04292 0.85296 0.81022 0.77535 0.77260 1.19180 1.23303 1.22363 0.92915 0.93170 0.93157 0.90745 0.93616 0.90230 0.93038 0.75122 0.84220 0.81801 0.73201 0.74429 0.93243 0.93297 0.86496 0.84880 0.85311 0.79555 0.94457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.18 71.98 0.66 -4.10 16 2 C -0.13 -4.24 5.61 30.60 0.17 -4.07 16 3 C 0.16 5.87 2.59 44.99 0.12 5.98 16 4 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 5 C 0.12 4.12 5.23 86.38 0.45 4.58 16 6 N -0.70 -24.25 5.34 -466.22 -2.49 -26.74 16 7 C 0.55 20.22 7.76 86.71 0.67 20.89 16 8 O -0.59 -24.87 16.34 -4.01 -0.07 -24.93 16 9 C -0.17 -5.32 5.88 -20.08 -0.12 -5.44 16 10 C -0.06 -1.54 9.53 22.50 0.21 -1.33 16 11 C -0.15 -3.14 9.94 22.35 0.22 -2.92 16 12 C 0.19 4.38 6.27 38.36 0.24 4.62 16 13 N -0.67 -10.57 5.32 -317.17 -1.69 -12.26 16 14 C 0.69 13.29 8.29 179.05 1.48 14.77 16 15 O -0.61 -17.80 14.02 -3.97 -0.06 -17.86 16 16 N -0.73 -7.32 5.72 -500.20 -2.86 -10.18 16 17 C 0.10 0.86 10.70 127.77 1.37 2.23 16 18 C -0.14 -3.87 8.62 22.35 0.19 -3.68 16 19 C -0.05 -1.46 9.58 22.50 0.22 -1.25 16 20 N -0.73 -32.40 4.51 -322.94 -1.46 -33.85 16 21 C -0.21 -10.45 7.75 84.04 0.65 -9.80 16 22 H 0.08 3.79 7.32 -2.91 -0.02 3.77 16 23 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 24 N -0.97 -55.45 13.06 21.65 0.28 -55.17 16 25 Si 0.96 43.36 29.55 68.60 2.03 45.39 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 28 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 2.03 5.99 -2.39 -0.01 2.01 16 31 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.41 13.86 6.16 -92.70 -0.57 13.29 16 37 H 0.14 3.62 6.39 -2.91 -0.02 3.60 16 38 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 39 H 0.43 3.19 8.83 -92.70 -0.82 2.37 16 40 H 0.42 1.00 8.85 -92.71 -0.82 0.18 16 41 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 43 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 44 H 0.13 3.79 6.41 -2.91 -0.02 3.78 16 45 H 0.13 4.03 7.64 -2.91 -0.02 4.01 16 46 H 0.37 18.63 7.80 -92.70 -0.72 17.91 16 47 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -73.51 390.75 -1.19 -74.70 By element: Atomic # 1 Polarization: 45.64 SS G_CDS: -1.90 Total: 43.74 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 7.01 Total: 17.17 kcal Atomic # 7 Polarization: -129.99 SS G_CDS: -8.21 Total: -138.20 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -0.12 Total: -42.79 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -73.51 -1.19 -74.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698620517.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.879 kcal (2) G-P(sol) polarization free energy of solvation -73.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds