Wall clock time and date at job start Tue Mar 31 2020 19:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47196 * 2 1 4 4 H 1.08998 * 109.47250 * 54.99556 * 3 2 1 5 5 C 1.53003 * 109.47395 * 174.99718 * 3 2 1 6 6 N 1.46500 * 109.47341 * 174.99598 * 5 3 2 7 7 C 1.34767 * 119.99906 * 180.02562 * 6 5 3 8 8 O 1.21594 * 120.00373 * 0.02562 * 7 6 5 9 9 C 1.47583 * 119.99922 * 180.02562 * 7 6 5 10 10 C 1.39754 * 120.07266 * 359.72111 * 9 7 6 11 11 C 1.37666 * 119.92585 * 179.81066 * 10 9 7 12 12 C 1.39143 * 120.07311 * 0.44449 * 11 10 9 13 13 N 1.39429 * 119.92389 * 179.76410 * 12 11 10 14 14 C 1.34775 * 119.99513 * 213.54556 * 13 12 11 15 15 O 1.21583 * 120.00344 * 5.32690 * 14 13 12 16 16 N 1.34782 * 119.99853 * 185.32155 * 14 13 12 17 17 C 1.46498 * 119.99961 * 180.02562 * 16 14 13 18 18 C 1.39140 * 120.14463 * 359.78587 * 12 11 10 19 19 C 1.37656 * 120.07480 * 359.97438 * 18 12 11 20 20 N 1.46499 * 109.46955 * 294.99686 * 3 2 1 21 21 C 1.36939 * 120.00100 * 84.99708 * 20 3 2 22 22 H 1.07999 * 119.99991 * 0.02562 * 21 20 3 23 23 C 1.38815 * 120.00206 * 179.97438 * 21 20 3 24 24 N 1.31622 * 119.99668 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99826 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47584 * 60.00461 * 25 23 21 27 27 H 1.48508 * 109.46894 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47288 * 299.99813 * 25 23 21 29 29 H 1.08999 * 109.47452 * 300.00308 * 1 2 3 30 30 H 1.08996 * 109.46946 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46563 * 60.00053 * 1 2 3 32 32 H 1.09003 * 109.47255 * 119.99685 * 2 1 3 33 33 H 1.08999 * 109.47452 * 239.99692 * 2 1 3 34 34 H 1.09001 * 109.47033 * 295.00031 * 5 3 2 35 35 H 1.09004 * 109.46795 * 54.99547 * 5 3 2 36 36 H 0.97002 * 119.99701 * 0.02562 * 6 5 3 37 37 H 1.07999 * 120.03711 * 0.02562 * 10 9 7 38 38 H 1.07999 * 119.96458 * 180.19143 * 11 10 9 39 39 H 0.96996 * 120.00396 * 33.55354 * 13 12 11 40 40 H 0.96999 * 119.99934 * 0.02562 * 16 14 13 41 41 H 1.09003 * 109.47139 * 60.00367 * 17 16 14 42 42 H 1.09001 * 109.47175 * 180.02562 * 17 16 14 43 43 H 1.09002 * 109.47135 * 300.00200 * 17 16 14 44 44 H 1.07997 * 119.95566 * 179.97438 * 18 12 11 45 45 H 1.07998 * 120.03234 * 179.97438 * 19 18 12 46 46 H 0.96998 * 120.00475 * 264.99974 * 20 3 2 47 47 H 0.97004 * 119.99613 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5649 1.4444 0.1258 6 7 4.0631 2.8168 0.0059 7 6 5.3857 3.0629 0.0858 8 8 6.1656 2.1458 0.2569 9 6 5.8876 4.4456 -0.0344 10 6 4.9932 5.5001 -0.2369 11 6 5.4643 6.7892 -0.3446 12 6 6.8301 7.0416 -0.2614 13 7 7.3042 8.3478 -0.3759 14 6 8.4975 8.5830 -0.9566 15 8 9.1161 7.6690 -1.4668 16 7 9.0052 9.8314 -0.9718 17 6 10.3020 10.0871 -1.6035 18 6 7.7237 5.9934 -0.0647 19 6 7.2588 4.7027 0.0489 20 7 1.6525 2.0974 -1.2518 21 6 0.4157 2.6734 -1.3690 22 1 -0.2740 2.6452 -0.5383 23 6 0.0487 3.2944 -2.5549 24 7 0.8894 3.3292 -3.5671 25 14 -1.6382 4.0807 -2.7143 26 1 -1.7866 5.1462 -1.6907 27 1 -1.7829 4.6715 -4.0691 28 1 -2.6866 3.0488 -2.5104 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.8499 1.0378 1.0961 35 1 3.9955 0.8311 -0.6658 36 1 3.4410 3.5484 -0.1309 37 1 3.9333 5.3045 -0.3053 38 1 4.7734 7.6049 -0.4981 39 1 6.7754 9.0872 -0.0376 40 1 8.5119 10.5606 -0.5646 41 1 10.2544 9.8094 -2.6565 42 1 10.5456 11.1461 -1.5173 43 1 11.0712 9.4961 -1.1063 44 1 8.7832 6.1928 -0.0009 45 1 7.9530 3.8896 0.2012 46 1 2.2720 2.1231 -1.9978 47 1 0.6328 3.7629 -4.3960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698620531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:09 Heat of formation + Delta-G solvation = -51.851372 kcal Electronic energy + Delta-G solvation = -28098.905993 eV Core-core repulsion = 24087.922477 eV Total energy + Delta-G solvation = -4010.983516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.85136 -40.95158 -39.31522 -38.19599 -35.93666 -35.72649 -35.27160 -34.13300 -32.04721 -31.54431 -31.18316 -29.24883 -27.55078 -25.69819 -24.70647 -24.13524 -23.30387 -22.16637 -21.59903 -21.15317 -19.78721 -19.39490 -18.96870 -18.42944 -17.22745 -16.94618 -16.72260 -16.26115 -16.18414 -15.88459 -15.72738 -15.65708 -15.27050 -15.11157 -14.74484 -14.57365 -14.41237 -14.23947 -14.06460 -13.83799 -13.63176 -13.49112 -13.05499 -12.94886 -12.76385 -12.71504 -12.36303 -12.31287 -12.11626 -11.85708 -11.63767 -11.60746 -11.35147 -11.30034 -11.02086 -10.81941 -10.24949 -10.04926 -10.03084 -9.15142 -8.94682 -7.83550 -5.11161 -0.23982 0.37140 1.49547 1.52933 1.54653 1.59863 1.71116 2.08451 2.27300 2.62934 2.88025 3.16693 3.49708 3.78546 3.81406 3.91992 3.94024 4.00172 4.28481 4.34593 4.40446 4.46135 4.49232 4.51380 4.59031 4.65290 4.76067 4.90071 4.95794 4.99439 5.07770 5.11985 5.15628 5.16255 5.23203 5.32521 5.33671 5.43896 5.49580 5.59941 5.64731 5.74702 5.85132 5.91744 6.35655 6.59653 6.90440 7.22101 7.38800 7.43684 8.15240 8.40736 9.39025 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.002611 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.732871 B =10722.019136 C =12477.133640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.165 3.835 4 H 0.062 0.938 5 C 0.121 3.879 6 N -0.704 5.704 7 C 0.554 3.446 8 O -0.588 6.588 9 C -0.168 4.168 10 C -0.058 4.058 11 C -0.145 4.145 12 C 0.193 3.807 13 N -0.669 5.669 14 C 0.693 3.307 15 O -0.615 6.615 16 N -0.727 5.727 17 C 0.101 3.899 18 C -0.141 4.141 19 C -0.048 4.048 20 N -0.728 5.728 21 C -0.215 4.215 22 H 0.081 0.919 23 C -0.072 4.072 24 N -0.968 5.968 25 Si 0.959 3.041 26 H -0.275 1.275 27 H -0.306 1.306 28 H -0.285 1.285 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.411 0.589 37 H 0.140 0.860 38 H 0.165 0.835 39 H 0.429 0.571 40 H 0.419 0.581 41 H 0.046 0.954 42 H 0.118 0.882 43 H 0.050 0.950 44 H 0.133 0.867 45 H 0.129 0.871 46 H 0.372 0.628 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.437 15.665 10.959 22.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.056 3.944 4 H 0.080 0.920 5 C -0.003 4.003 6 N -0.355 5.355 7 C 0.343 3.657 8 O -0.471 6.471 9 C -0.172 4.172 10 C -0.077 4.077 11 C -0.166 4.166 12 C 0.096 3.904 13 N -0.318 5.318 14 C 0.393 3.607 15 O -0.495 6.495 16 N -0.383 5.383 17 C -0.043 4.043 18 C -0.162 4.162 19 C -0.068 4.068 20 N -0.368 5.368 21 C -0.347 4.347 22 H 0.099 0.901 23 C -0.264 4.264 24 N -0.619 5.619 25 Si 0.790 3.210 26 H -0.201 1.201 27 H -0.233 1.233 28 H -0.211 1.211 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.249 0.751 37 H 0.158 0.842 38 H 0.182 0.818 39 H 0.269 0.731 40 H 0.256 0.744 41 H 0.065 0.935 42 H 0.136 0.864 43 H 0.068 0.932 44 H 0.151 0.849 45 H 0.147 0.853 46 H 0.203 0.797 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.406 14.371 10.669 22.363 hybrid contribution -1.354 0.987 -0.728 1.827 sum 12.052 15.358 9.942 21.908 Atomic orbital electron populations 1.21694 0.95848 1.00569 1.01863 1.21993 0.96711 0.97356 1.01009 1.20718 0.90613 0.93368 0.89657 0.91975 1.21620 0.94608 0.82603 1.01519 1.45867 1.06873 1.10841 1.71874 1.18531 0.82325 0.88945 0.75940 1.90702 1.56874 1.47119 1.52372 1.19876 0.94985 0.92556 1.09788 1.21312 0.99801 0.91835 0.94772 1.21031 0.93660 0.97761 1.04139 1.17698 0.92593 0.84223 0.95902 1.42322 1.20340 1.07325 1.61803 1.16242 0.81114 0.84385 0.78953 1.90971 1.61827 1.44799 1.51882 1.44827 1.23744 1.07363 1.62386 1.21616 0.82221 1.03417 0.97071 1.21052 1.00496 0.91677 1.02930 1.21078 0.93998 0.96892 0.94796 1.42587 1.15837 1.66110 1.12284 1.19461 0.92434 1.25304 0.97514 0.90089 1.25373 1.00886 1.03557 0.96633 1.69817 1.36852 1.50971 1.04293 0.85421 0.81030 0.78553 0.75998 1.20134 1.23262 1.21150 0.93019 0.92959 0.93269 0.90660 0.93748 0.90051 0.93229 0.75123 0.84235 0.81778 0.73118 0.74374 0.93515 0.86405 0.93164 0.84881 0.85316 0.79651 0.94505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 9.18 71.98 0.66 -4.11 16 2 C -0.13 -4.25 5.61 30.60 0.17 -4.08 16 3 C 0.17 5.88 2.59 44.99 0.12 5.99 16 4 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 5 C 0.12 4.13 5.23 86.38 0.45 4.58 16 6 N -0.70 -24.29 5.34 -466.21 -2.49 -26.77 16 7 C 0.55 20.24 7.76 86.71 0.67 20.92 16 8 O -0.59 -24.90 16.34 -4.01 -0.07 -24.96 16 9 C -0.17 -5.33 5.88 -20.08 -0.12 -5.45 16 10 C -0.06 -1.55 9.53 22.50 0.21 -1.33 16 11 C -0.15 -3.13 9.94 22.35 0.22 -2.91 16 12 C 0.19 4.37 6.27 38.37 0.24 4.61 16 13 N -0.67 -10.54 5.32 -317.16 -1.69 -12.23 16 14 C 0.69 13.65 8.29 179.05 1.48 15.14 16 15 O -0.62 -18.53 14.02 -3.98 -0.06 -18.59 16 16 N -0.73 -7.56 5.72 -500.19 -2.86 -10.41 16 17 C 0.10 0.92 10.70 127.77 1.37 2.29 16 18 C -0.14 -3.88 8.62 22.35 0.19 -3.68 16 19 C -0.05 -1.47 9.58 22.50 0.22 -1.25 16 20 N -0.73 -32.72 4.51 -322.93 -1.46 -34.17 16 21 C -0.22 -10.61 7.75 84.03 0.65 -9.96 16 22 H 0.08 3.81 7.32 -2.91 -0.02 3.79 16 23 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 24 N -0.97 -56.41 13.06 21.65 0.28 -56.12 16 25 Si 0.96 43.63 29.55 68.60 2.03 45.66 16 26 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.31 -14.47 7.11 99.48 0.71 -13.76 16 28 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 2.00 5.99 -2.39 -0.01 1.99 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.41 13.89 6.16 -92.71 -0.57 13.32 16 37 H 0.14 3.63 6.39 -2.91 -0.02 3.61 16 38 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 39 H 0.43 2.93 8.83 -92.71 -0.82 2.11 16 40 H 0.42 0.99 8.85 -92.71 -0.82 0.17 16 41 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.13 3.80 6.41 -2.91 -0.02 3.78 16 45 H 0.13 4.04 7.64 -2.91 -0.02 4.01 16 46 H 0.37 18.87 7.80 -92.71 -0.72 18.14 16 47 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -74.84 390.75 -1.19 -76.02 By element: Atomic # 1 Polarization: 46.12 SS G_CDS: -1.90 Total: 44.22 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 7.01 Total: 17.36 kcal Atomic # 7 Polarization: -131.51 SS G_CDS: -8.21 Total: -139.71 kcal Atomic # 8 Polarization: -43.43 SS G_CDS: -0.12 Total: -43.55 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -74.84 -1.19 -76.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698620531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.172 kcal (2) G-P(sol) polarization free energy of solvation -74.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds