Wall clock time and date at job start Tue Mar 31 2020 18:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47065 * 2 1 4 4 H 1.09002 * 109.87731 * 55.81227 * 3 2 1 5 5 C 1.54322 * 109.88335 * 294.79249 * 3 2 1 6 6 H 1.08999 * 110.72057 * 336.92840 * 5 3 2 7 7 N 1.46498 * 110.72042 * 100.03042 * 5 3 2 8 8 C 1.34771 * 119.99887 * 202.28229 * 7 5 3 9 9 O 1.21279 * 120.00480 * 359.97438 * 8 7 5 10 10 C 1.50701 * 120.00023 * 179.97438 * 8 7 5 11 11 C 1.52997 * 109.47297 * 179.97438 * 10 8 7 12 12 N 1.46500 * 109.47471 * 179.97438 * 11 10 8 13 13 C 1.34742 * 120.04489 * 269.73142 * 12 11 10 14 14 N 1.30639 * 121.49341 * 179.69632 * 13 12 11 15 15 C 1.33521 * 121.50561 * 0.58528 * 14 13 12 16 16 C 1.36207 * 119.90619 * 359.70698 * 15 14 13 17 17 C 1.35026 * 120.03690 * 89.99919 * 12 11 10 18 18 O 1.21979 * 120.71086 * 359.97438 * 17 12 11 19 19 C 1.55163 * 103.10059 * 218.47880 * 5 3 2 20 20 C 1.55122 * 101.48383 * 35.28586 * 19 5 3 21 21 N 1.47028 * 109.88160 * 176.98320 * 3 2 1 22 22 C 1.36930 * 125.64627 * 298.39981 * 21 3 2 23 23 H 1.07996 * 120.00356 * 345.37468 * 22 21 3 24 24 C 1.38822 * 120.00082 * 165.38018 * 22 21 3 25 25 N 1.31621 * 119.99308 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00195 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47146 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47193 * 119.99905 * 26 24 22 29 29 H 1.48508 * 109.47102 * 239.99823 * 26 24 22 30 30 H 1.09004 * 109.47369 * 65.56586 * 1 2 3 31 31 H 1.08992 * 109.47152 * 185.57054 * 1 2 3 32 32 H 1.09006 * 109.46781 * 305.56758 * 1 2 3 33 33 H 1.08995 * 109.46635 * 239.99979 * 2 1 3 34 34 H 1.08991 * 109.46987 * 120.00192 * 2 1 3 35 35 H 0.97003 * 119.99796 * 22.55535 * 7 5 3 36 36 H 1.09005 * 109.47282 * 300.00113 * 10 8 7 37 37 H 1.09001 * 109.47469 * 60.00111 * 10 8 7 38 38 H 1.08995 * 109.47459 * 299.99897 * 11 10 8 39 39 H 1.09008 * 109.47263 * 60.00378 * 11 10 8 40 40 H 1.07996 * 119.25645 * 359.97303 * 13 12 11 41 41 H 1.07998 * 120.05021 * 179.73587 * 15 14 13 42 42 H 1.07996 * 120.70047 * 179.97438 * 16 15 14 43 43 H 1.09003 * 111.00133 * 153.48359 * 19 5 3 44 44 H 1.08996 * 111.00729 * 277.34105 * 19 5 3 45 45 H 1.09008 * 110.41831 * 204.29410 * 20 19 5 46 46 H 1.08998 * 110.30716 * 82.08998 * 20 19 5 47 47 H 0.97008 * 119.99372 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6205 1.9839 0.8479 5 6 1.6412 2.1402 -1.3175 6 1 1.4634 1.4066 -2.1038 7 7 0.4593 2.9830 -1.1205 8 6 -0.3143 3.3154 -2.1728 9 8 -0.0318 2.9171 -3.2830 10 6 -1.5305 4.1820 -1.9701 11 6 -2.2257 4.4076 -3.3142 12 7 -3.4083 5.2495 -3.1171 13 6 -4.6031 4.6840 -2.8559 14 7 -5.6746 5.4078 -2.6696 15 6 -5.6374 6.7406 -2.7408 16 6 -4.4613 7.3739 -3.0072 17 6 -3.3033 6.5930 -3.2023 18 8 -2.2298 7.1200 -3.4425 19 6 2.8851 3.0073 -1.6467 20 6 4.0370 2.0988 -1.1429 21 7 3.5084 1.4537 0.0728 22 6 4.2604 0.9478 1.0992 23 1 3.7943 0.7097 2.0438 24 6 5.6222 0.7410 0.9257 25 7 6.1902 1.0309 -0.2258 26 14 6.6482 0.0516 2.3261 27 1 5.7783 -0.1882 3.5056 28 1 7.2700 -1.2281 1.9008 29 1 7.7120 1.0235 2.6855 30 1 -0.3634 0.4251 -0.9356 31 1 -0.3633 -1.0227 0.0997 32 1 -0.3633 0.5978 0.8360 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.2358 3.3052 -0.2332 36 1 -2.2181 3.6883 -1.2833 37 1 -1.2270 5.1421 -1.5528 38 1 -1.5380 4.9015 -4.0006 39 1 -2.5292 3.4476 -3.7320 40 1 -4.6758 3.6082 -2.7949 41 1 -6.5385 7.3157 -2.5870 42 1 -4.4166 8.4512 -3.0681 43 1 2.9646 3.1850 -2.7192 44 1 2.8621 3.9482 -1.0970 45 1 4.9161 2.6971 -0.9031 46 1 4.2833 1.3484 -1.8941 47 1 7.1417 0.8860 -0.3472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707203128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:34 Heat of formation + Delta-G solvation = -6.852630 kcal Electronic energy + Delta-G solvation = -28795.234213 eV Core-core repulsion = 24786.201989 eV Total energy + Delta-G solvation = -4009.032224 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.18327 -39.90133 -37.98081 -37.84441 -36.03924 -34.10783 -32.83462 -32.02752 -31.42925 -31.31791 -29.01608 -26.90237 -25.88945 -24.84968 -24.31385 -23.16655 -22.13521 -20.61763 -20.22248 -19.52393 -18.75607 -18.06514 -17.46447 -16.91862 -16.51636 -16.34109 -15.84469 -15.58549 -14.92380 -14.80067 -14.77924 -14.18105 -13.95378 -13.89176 -13.54042 -13.37385 -13.36418 -13.15738 -12.95169 -12.74125 -12.08105 -11.99023 -11.73752 -11.64581 -11.20000 -10.96323 -10.93942 -10.87772 -10.66645 -10.54977 -10.50877 -10.42973 -10.33755 -10.08341 -9.84901 -9.70526 -9.69509 -8.91353 -8.72947 -8.61500 -6.84942 -5.79148 -3.15806 0.19693 1.46576 1.98019 2.61964 3.14731 3.31141 3.36212 3.42058 3.44118 3.64327 4.10233 4.19325 4.34721 4.44366 4.48184 4.72725 4.82718 5.00074 5.11437 5.22147 5.30434 5.32232 5.35747 5.46484 5.48357 5.50381 5.68102 5.75056 5.79629 5.91615 5.99171 6.17985 6.18930 6.22765 6.34874 6.40683 6.51150 6.63995 6.66858 6.89279 7.08010 7.32485 7.46455 7.47323 7.55781 7.61557 7.75684 8.21343 8.26553 9.14136 9.75129 10.42685 11.32787 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025349 B = 0.002226 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.333893 B =12573.145708 C =13019.604840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.034 0.966 5 C 0.138 3.862 6 H 0.094 0.906 7 N -0.711 5.711 8 C 0.519 3.481 9 O -0.542 6.542 10 C -0.157 4.157 11 C 0.104 3.896 12 N -0.520 5.520 13 C 0.376 3.624 14 N -0.546 5.546 15 C 0.149 3.851 16 C -0.289 4.289 17 C 0.513 3.487 18 O -0.531 6.531 19 C -0.157 4.157 20 C 0.174 3.826 21 N -0.594 5.594 22 C -0.228 4.228 23 H 0.076 0.924 24 C -0.004 4.004 25 N -0.915 5.915 26 Si 0.910 3.090 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.290 1.290 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.398 0.602 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.205 0.795 41 H 0.166 0.834 42 H 0.155 0.845 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.028 0.972 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.836 6.959 -3.590 25.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.052 0.948 5 C 0.033 3.967 6 H 0.112 0.888 7 N -0.361 5.361 8 C 0.304 3.696 9 O -0.420 6.420 10 C -0.198 4.198 11 C -0.019 4.019 12 N -0.237 5.237 13 C 0.092 3.908 14 N -0.269 5.269 15 C 0.011 3.989 16 C -0.313 4.313 17 C 0.312 3.688 18 O -0.408 6.408 19 C -0.197 4.197 20 C 0.049 3.951 21 N -0.318 5.318 22 C -0.357 4.357 23 H 0.093 0.907 24 C -0.201 4.201 25 N -0.562 5.562 26 Si 0.741 3.259 27 H -0.204 1.204 28 H -0.217 1.217 29 H -0.217 1.217 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.233 0.767 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.221 0.779 41 H 0.183 0.817 42 H 0.172 0.828 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.092 0.908 46 H 0.046 0.954 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -23.431 6.769 -4.337 24.772 hybrid contribution 1.172 0.169 1.061 1.590 sum -22.259 6.938 -3.276 23.544 Atomic orbital electron populations 1.21767 0.97323 1.00510 1.00770 1.22018 0.93529 0.99180 1.02467 1.21074 0.87167 0.93343 0.93133 0.94801 1.22140 0.83378 0.92362 0.98778 0.88798 1.46068 1.27700 1.52006 1.10281 1.20078 0.83871 0.80684 0.84985 1.90731 1.72662 1.54729 1.23837 1.21954 0.97039 1.02054 0.98777 1.21824 0.86142 0.95715 0.98193 1.46960 1.11001 1.09814 1.55925 1.25135 0.79378 1.00710 0.85530 1.68429 1.26728 1.07788 1.23927 1.22684 0.98000 0.89807 0.88445 1.22987 0.92585 1.02767 1.13011 1.17401 0.91089 0.80900 0.79407 1.91002 1.29630 1.70589 1.49555 1.23462 0.96750 0.99046 1.00415 1.21469 0.93111 0.92912 0.87636 1.44445 0.98333 1.68345 1.20716 1.18972 0.89921 1.35931 0.90851 0.90657 1.24926 0.97267 1.00888 0.96996 1.69943 1.10635 1.52763 1.22828 0.86079 0.80251 0.78500 0.81114 1.20441 1.21666 1.21734 0.93387 0.93666 0.93495 0.92342 0.91690 0.76737 0.88309 0.88050 0.86859 0.87394 0.77869 0.81674 0.82770 0.91811 0.92070 0.90804 0.95385 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.58 37.16 0.36 -1.60 16 2 C -0.13 -2.33 5.41 -26.73 -0.14 -2.47 16 3 C 0.16 3.04 2.94 -66.95 -0.20 2.85 16 4 H 0.03 0.63 7.70 -51.93 -0.40 0.23 16 5 C 0.14 2.33 1.96 -66.09 -0.13 2.20 16 6 H 0.09 1.73 7.27 -51.93 -0.38 1.35 16 7 N -0.71 -9.15 4.93 -52.03 -0.26 -9.40 16 8 C 0.52 6.43 7.83 -10.99 -0.09 6.35 16 9 O -0.54 -8.71 15.67 5.56 0.09 -8.62 16 10 C -0.16 -1.30 6.02 -27.88 -0.17 -1.47 16 11 C 0.10 0.85 4.67 -4.04 -0.02 0.83 16 12 N -0.52 -4.07 2.57 -121.11 -0.31 -4.38 16 13 C 0.38 2.06 11.48 -90.53 -1.04 1.02 16 14 N -0.55 -3.74 10.39 -14.48 -0.15 -3.89 16 15 C 0.15 0.95 11.20 -17.55 -0.20 0.75 16 16 C -0.29 -2.37 10.07 -39.26 -0.40 -2.77 16 17 C 0.51 5.56 7.45 -15.09 -0.11 5.44 16 18 O -0.53 -7.95 16.78 4.94 0.08 -7.87 16 19 C -0.16 -3.00 6.79 -24.46 -0.17 -3.17 16 20 C 0.17 4.13 5.42 -2.41 -0.01 4.12 16 21 N -0.59 -14.31 3.13 -162.43 -0.51 -14.82 16 22 C -0.23 -6.07 9.75 -15.06 -0.15 -6.21 16 23 H 0.08 1.95 7.83 -52.49 -0.41 1.53 16 24 C 0.00 -0.10 5.47 -17.43 -0.10 -0.19 16 25 N -0.92 -26.31 10.57 55.49 0.59 -25.72 16 26 Si 0.91 21.57 29.55 -169.99 -5.02 16.54 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H 0.05 0.63 7.40 -51.93 -0.38 0.24 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 34 H 0.06 1.24 7.90 -51.93 -0.41 0.83 16 35 H 0.40 4.23 8.34 -40.82 -0.34 3.88 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.11 1.26 7.41 -51.93 -0.39 0.87 16 39 H 0.11 0.66 7.97 -51.92 -0.41 0.25 16 40 H 0.20 0.29 8.02 -52.49 -0.42 -0.13 16 41 H 0.17 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.07 1.96 6.93 -51.92 -0.36 1.60 16 46 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 387.12 15.07 5.83 5.83 Total: -1.00 -34.70 387.12 -9.47 -44.16 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.26 Total: 2.49 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -2.55 Total: 5.68 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.64 Total: -58.22 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.17 Total: -16.49 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.70 -9.47 -44.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707203128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.312 kcal (2) G-P(sol) polarization free energy of solvation -34.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds