Wall clock time and date at job start Tue Mar 31 2020 18:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47065 * 2 1 4 4 H 1.09002 * 109.87731 * 55.81227 * 3 2 1 5 5 C 1.54322 * 109.88335 * 294.79249 * 3 2 1 6 6 H 1.08999 * 110.72057 * 336.92840 * 5 3 2 7 7 N 1.46498 * 110.72042 * 100.03042 * 5 3 2 8 8 C 1.34771 * 119.99887 * 202.28229 * 7 5 3 9 9 O 1.21279 * 120.00480 * 359.97438 * 8 7 5 10 10 C 1.50701 * 120.00023 * 179.97438 * 8 7 5 11 11 C 1.52997 * 109.47297 * 179.97438 * 10 8 7 12 12 N 1.46500 * 109.47471 * 179.97438 * 11 10 8 13 13 C 1.34742 * 120.04489 * 269.73142 * 12 11 10 14 14 N 1.30639 * 121.49341 * 179.69632 * 13 12 11 15 15 C 1.33521 * 121.50561 * 0.58528 * 14 13 12 16 16 C 1.36207 * 119.90619 * 359.70698 * 15 14 13 17 17 C 1.35026 * 120.03690 * 89.99919 * 12 11 10 18 18 O 1.21979 * 120.71086 * 359.97438 * 17 12 11 19 19 C 1.55163 * 103.10059 * 218.47880 * 5 3 2 20 20 C 1.55122 * 101.48383 * 35.28586 * 19 5 3 21 21 N 1.47028 * 109.88160 * 176.98320 * 3 2 1 22 22 C 1.36930 * 125.64627 * 298.39981 * 21 3 2 23 23 H 1.07996 * 120.00356 * 345.37468 * 22 21 3 24 24 C 1.38822 * 120.00082 * 165.38018 * 22 21 3 25 25 N 1.31621 * 119.99308 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00195 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47146 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47193 * 119.99905 * 26 24 22 29 29 H 1.48508 * 109.47102 * 239.99823 * 26 24 22 30 30 H 1.09004 * 109.47369 * 65.56586 * 1 2 3 31 31 H 1.08992 * 109.47152 * 185.57054 * 1 2 3 32 32 H 1.09006 * 109.46781 * 305.56758 * 1 2 3 33 33 H 1.08995 * 109.46635 * 239.99979 * 2 1 3 34 34 H 1.08991 * 109.46987 * 120.00192 * 2 1 3 35 35 H 0.97003 * 119.99796 * 22.55535 * 7 5 3 36 36 H 1.09005 * 109.47282 * 300.00113 * 10 8 7 37 37 H 1.09001 * 109.47469 * 60.00111 * 10 8 7 38 38 H 1.08995 * 109.47459 * 299.99897 * 11 10 8 39 39 H 1.09008 * 109.47263 * 60.00378 * 11 10 8 40 40 H 1.07996 * 119.25645 * 359.97303 * 13 12 11 41 41 H 1.07998 * 120.05021 * 179.73587 * 15 14 13 42 42 H 1.07996 * 120.70047 * 179.97438 * 16 15 14 43 43 H 1.09003 * 111.00133 * 153.48359 * 19 5 3 44 44 H 1.08996 * 111.00729 * 277.34105 * 19 5 3 45 45 H 1.09008 * 110.41831 * 204.29410 * 20 19 5 46 46 H 1.08998 * 110.30716 * 82.08998 * 20 19 5 47 47 H 0.97008 * 119.99372 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6205 1.9839 0.8479 5 6 1.6412 2.1402 -1.3175 6 1 1.4634 1.4066 -2.1038 7 7 0.4593 2.9830 -1.1205 8 6 -0.3143 3.3154 -2.1728 9 8 -0.0318 2.9171 -3.2830 10 6 -1.5305 4.1820 -1.9701 11 6 -2.2257 4.4076 -3.3142 12 7 -3.4083 5.2495 -3.1171 13 6 -4.6031 4.6840 -2.8559 14 7 -5.6746 5.4078 -2.6696 15 6 -5.6374 6.7406 -2.7408 16 6 -4.4613 7.3739 -3.0072 17 6 -3.3033 6.5930 -3.2023 18 8 -2.2298 7.1200 -3.4425 19 6 2.8851 3.0073 -1.6467 20 6 4.0370 2.0988 -1.1429 21 7 3.5084 1.4537 0.0728 22 6 4.2604 0.9478 1.0992 23 1 3.7943 0.7097 2.0438 24 6 5.6222 0.7410 0.9257 25 7 6.1902 1.0309 -0.2258 26 14 6.6482 0.0516 2.3261 27 1 5.7783 -0.1882 3.5056 28 1 7.2700 -1.2281 1.9008 29 1 7.7120 1.0235 2.6855 30 1 -0.3634 0.4251 -0.9356 31 1 -0.3633 -1.0227 0.0997 32 1 -0.3633 0.5978 0.8360 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.2358 3.3052 -0.2332 36 1 -2.2181 3.6883 -1.2833 37 1 -1.2270 5.1421 -1.5528 38 1 -1.5380 4.9015 -4.0006 39 1 -2.5292 3.4476 -3.7320 40 1 -4.6758 3.6082 -2.7949 41 1 -6.5385 7.3157 -2.5870 42 1 -4.4166 8.4512 -3.0681 43 1 2.9646 3.1850 -2.7192 44 1 2.8621 3.9482 -1.0970 45 1 4.9161 2.6971 -0.9031 46 1 4.2833 1.3484 -1.8941 47 1 7.1417 0.8860 -0.3472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707203128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:33 Heat of formation + Delta-G solvation = -29.937168 kcal Electronic energy + Delta-G solvation = -28796.235234 eV Core-core repulsion = 24786.201989 eV Total energy + Delta-G solvation = -4010.033245 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.81152 -41.07934 -39.34993 -38.68892 -36.72292 -35.61719 -34.28277 -33.53451 -32.38620 -31.97300 -30.74426 -28.23036 -26.90523 -26.08620 -25.33767 -24.05250 -23.35571 -22.21051 -21.54767 -20.94392 -19.33486 -18.87044 -18.70135 -18.13927 -17.51092 -17.24227 -16.91726 -16.68024 -16.48403 -15.78649 -15.48822 -15.46386 -15.41631 -15.21289 -14.56760 -14.40847 -14.28199 -14.08598 -13.98474 -13.74946 -13.59592 -13.53743 -13.21569 -12.90099 -12.72283 -12.58827 -12.34292 -12.20468 -12.01017 -11.96501 -11.88189 -11.58443 -11.56534 -11.34815 -11.27738 -11.04601 -10.87750 -10.68860 -9.98369 -9.57820 -8.83560 -7.86477 -5.24372 -0.30347 0.82246 1.33800 1.46519 1.46977 1.57196 1.62551 2.18444 2.50891 2.64456 3.25450 3.33781 3.51806 3.55487 3.64306 3.72153 3.84726 3.88908 3.92679 4.02029 4.20625 4.30258 4.38864 4.40658 4.42997 4.55508 4.62560 4.66520 4.70803 4.76452 4.78360 4.89724 4.90777 5.01594 5.18419 5.24821 5.34044 5.41687 5.47354 5.51117 5.56622 5.58128 5.68657 5.70785 6.22893 6.56745 6.73744 6.82934 7.08189 7.25438 7.76298 8.43304 9.25059 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025349 B = 0.002226 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.333893 B =12573.145708 C =13019.604840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.127 4.127 3 C 0.158 3.842 4 H 0.053 0.947 5 C 0.159 3.841 6 H 0.081 0.919 7 N -0.702 5.702 8 C 0.521 3.479 9 O -0.579 6.579 10 C -0.142 4.142 11 C 0.106 3.894 12 N -0.515 5.515 13 C 0.386 3.614 14 N -0.558 5.558 15 C 0.171 3.829 16 C -0.315 4.315 17 C 0.498 3.502 18 O -0.590 6.590 19 C -0.144 4.144 20 C 0.182 3.818 21 N -0.614 5.614 22 C -0.229 4.229 23 H 0.084 0.916 24 C -0.066 4.066 25 N -0.951 5.951 26 Si 0.974 3.026 27 H -0.262 1.262 28 H -0.295 1.295 29 H -0.295 1.295 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.034 0.966 34 H 0.047 0.953 35 H 0.414 0.586 36 H 0.143 0.857 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.136 0.864 40 H 0.252 0.748 41 H 0.197 0.803 42 H 0.156 0.844 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.037 0.963 46 H -0.006 1.006 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.971 6.399 -1.952 28.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.166 4.166 3 C 0.051 3.949 4 H 0.071 0.929 5 C 0.053 3.947 6 H 0.099 0.901 7 N -0.353 5.353 8 C 0.309 3.691 9 O -0.459 6.459 10 C -0.183 4.183 11 C -0.016 4.016 12 N -0.229 5.229 13 C 0.104 3.896 14 N -0.280 5.280 15 C 0.031 3.969 16 C -0.339 4.339 17 C 0.300 3.700 18 O -0.472 6.472 19 C -0.184 4.184 20 C 0.056 3.944 21 N -0.339 5.339 22 C -0.358 4.358 23 H 0.101 0.899 24 C -0.259 4.259 25 N -0.599 5.599 26 Si 0.803 3.197 27 H -0.186 1.186 28 H -0.223 1.223 29 H -0.222 1.222 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.251 0.749 36 H 0.161 0.839 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.154 0.846 40 H 0.267 0.733 41 H 0.214 0.786 42 H 0.174 0.826 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.056 0.944 46 H 0.012 0.988 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -27.661 6.192 -2.657 28.470 hybrid contribution 2.337 0.318 0.527 2.417 sum -25.324 6.510 -2.130 26.234 Atomic orbital electron populations 1.21650 0.93344 1.02014 1.02033 1.21903 0.96931 0.97373 1.00441 1.21287 0.84219 0.94743 0.94649 0.92926 1.21619 0.84025 0.91862 0.97216 0.90057 1.45848 1.26361 1.51543 1.11543 1.20733 0.84394 0.80091 0.83925 1.90731 1.73665 1.56131 1.25343 1.21883 0.95679 1.01071 0.99619 1.21765 0.85914 0.96299 0.97643 1.46899 1.11795 1.08859 1.55384 1.26103 0.77839 1.02447 0.83222 1.68543 1.27115 1.07935 1.24367 1.23126 0.98197 0.89942 0.85630 1.22978 0.92543 1.02968 1.15440 1.17850 0.91017 0.82042 0.79064 1.90964 1.31648 1.71868 1.52761 1.23272 0.96153 0.98662 1.00308 1.21149 0.93778 0.92299 0.87175 1.44691 1.00770 1.68348 1.20047 1.19339 0.90323 1.34397 0.91745 0.89852 1.25736 0.98692 1.02153 0.99309 1.70157 1.10289 1.54594 1.24867 0.85065 0.78569 0.77108 0.78935 1.18589 1.22272 1.22203 0.92667 0.92316 0.91371 0.94713 0.93466 0.74870 0.83896 0.88545 0.90437 0.84641 0.73266 0.78646 0.82614 0.91738 0.91241 0.94427 0.98832 0.94451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.58 71.98 0.69 -2.40 16 2 C -0.13 -4.32 5.41 30.59 0.17 -4.16 16 3 C 0.16 5.80 2.94 45.34 0.13 5.93 16 4 H 0.05 1.78 7.70 -2.39 -0.02 1.76 16 5 C 0.16 5.23 1.96 46.18 0.09 5.32 16 6 H 0.08 2.95 7.27 -2.39 -0.02 2.94 16 7 N -0.70 -16.20 4.93 -436.92 -2.15 -18.36 16 8 C 0.52 11.64 7.83 87.66 0.69 12.33 16 9 O -0.58 -17.85 15.67 -3.03 -0.05 -17.90 16 10 C -0.14 -1.88 6.02 29.85 0.18 -1.70 16 11 C 0.11 1.51 4.67 86.38 0.40 1.91 16 12 N -0.51 -6.83 2.57 -655.04 -1.68 -8.51 16 13 C 0.39 2.60 11.48 180.32 2.07 4.67 16 14 N -0.56 -5.47 10.39 -199.73 -2.08 -7.54 16 15 C 0.17 1.68 11.20 83.96 0.94 2.62 16 16 C -0.31 -4.84 10.07 22.48 0.23 -4.62 16 17 C 0.50 10.57 7.45 84.88 0.63 11.21 16 18 O -0.59 -18.45 16.78 -5.25 -0.09 -18.54 16 19 C -0.14 -5.59 6.79 32.06 0.22 -5.38 16 20 C 0.18 9.06 5.42 86.93 0.47 9.54 16 21 N -0.61 -30.12 3.13 -667.82 -2.09 -32.21 16 22 C -0.23 -12.30 9.75 84.04 0.82 -11.48 16 23 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 24 C -0.07 -3.68 5.47 84.86 0.46 -3.22 16 25 N -0.95 -57.20 10.57 21.66 0.23 -56.97 16 26 Si 0.97 45.16 29.55 68.60 2.03 47.19 16 27 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 28 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 29 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 30 H 0.05 1.23 7.40 -2.38 -0.02 1.21 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.03 1.32 8.07 -2.39 -0.02 1.30 16 34 H 0.05 1.76 7.90 -2.39 -0.02 1.74 16 35 H 0.41 7.21 8.34 -92.71 -0.77 6.44 16 36 H 0.14 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 1.73 7.41 -2.39 -0.02 1.71 16 39 H 0.14 1.17 7.97 -2.38 -0.02 1.15 16 40 H 0.25 -0.84 8.02 -2.91 -0.02 -0.87 16 41 H 0.20 0.61 8.06 -2.91 -0.02 0.59 16 42 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 43 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 45 H 0.04 2.12 6.93 -2.38 -0.02 2.10 16 46 H -0.01 -0.35 8.06 -2.39 -0.02 -0.37 16 47 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 Total: -1.00 -82.00 387.12 2.51 -79.49 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.20 Total: 12.79 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 8.19 Total: 20.56 kcal Atomic # 7 Polarization: -115.81 SS G_CDS: -7.77 Total: -123.59 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -0.14 Total: -36.43 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -82.00 2.51 -79.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707203128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.551 kcal (2) G-P(sol) polarization free energy of solvation -81.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds