Wall clock time and date at job start Tue Mar 31 2020 19:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47250 * 305.58106 * 3 2 1 5 5 C 1.53000 * 109.46986 * 185.58202 * 3 2 1 6 6 N 1.46500 * 109.47029 * 185.00192 * 5 3 2 7 7 C 1.34782 * 119.99716 * 180.02562 * 6 5 3 8 8 O 1.21511 * 120.00218 * 359.97438 * 7 6 5 9 9 C 1.48151 * 119.99475 * 180.02562 * 7 6 5 10 10 C 1.39833 * 120.92448 * 354.24251 * 9 7 6 11 11 C 1.38129 * 118.99966 * 179.97438 * 10 9 7 12 12 N 1.31826 * 120.90192 * 0.02562 * 11 10 9 13 13 C 1.31807 * 122.04677 * 359.97438 * 12 11 10 14 14 C 1.38172 * 120.89524 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.49984 * 180.02562 * 14 13 12 16 16 N 1.46900 * 109.46957 * 65.58412 * 3 2 1 17 17 C 1.46894 * 111.00364 * 64.12086 * 16 3 2 18 18 C 1.50702 * 109.47034 * 184.38690 * 17 16 3 19 19 O 1.21291 * 120.00150 * 359.97438 * 18 17 16 20 20 N 1.34783 * 119.99730 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99910 * 180.02562 * 20 18 17 22 22 H 1.07999 * 119.99864 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00016 * 180.02562 * 21 20 18 24 24 N 1.31418 * 119.99975 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99805 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47410 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47060 * 119.99903 * 25 23 21 28 28 H 1.48504 * 109.46982 * 239.99165 * 25 23 21 29 29 H 1.08996 * 109.47235 * 304.14113 * 1 2 3 30 30 H 1.09008 * 109.46787 * 64.13942 * 1 2 3 31 31 H 1.08992 * 109.47339 * 184.13686 * 1 2 3 32 32 H 1.08997 * 109.47240 * 240.00025 * 2 1 3 33 33 H 1.09003 * 109.47252 * 119.99421 * 2 1 3 34 34 H 1.08997 * 109.47371 * 64.99717 * 5 3 2 35 35 H 1.09007 * 109.47287 * 304.99691 * 5 3 2 36 36 H 0.96992 * 120.00337 * 0.02562 * 6 5 3 37 37 H 1.07993 * 120.50176 * 0.02562 * 10 9 7 38 38 H 1.08007 * 119.54775 * 180.02562 * 11 10 9 39 39 H 1.07994 * 119.55188 * 179.97438 * 13 12 11 40 40 H 1.08999 * 109.47099 * 263.29703 * 15 14 13 41 41 H 1.08995 * 109.46822 * 23.29701 * 15 14 13 42 42 H 1.08998 * 109.47093 * 143.29528 * 15 14 13 43 43 H 1.00896 * 111.00074 * 300.16341 * 16 3 2 44 44 H 1.09003 * 109.47106 * 304.38859 * 17 16 3 45 45 H 1.09004 * 109.47329 * 64.38809 * 17 16 3 46 46 H 0.97000 * 120.00297 * 359.97438 * 20 18 17 47 47 H 0.96997 * 119.99785 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5973 1.9844 -0.8358 5 6 3.5635 1.4448 -0.1403 6 7 4.0629 2.8169 -0.0206 7 6 5.3847 3.0634 -0.1133 8 8 6.1622 2.1476 -0.2957 9 6 5.8897 4.4509 0.0083 10 6 5.0069 5.5315 0.0996 11 6 5.5210 6.8086 0.2122 12 7 6.8229 7.0148 0.2335 13 6 7.6893 6.0250 0.1500 14 6 7.2621 4.7161 0.0348 15 6 8.2605 3.5912 -0.0595 16 7 1.6634 2.0950 1.2611 17 6 2.3218 1.4498 2.4048 18 6 1.8300 2.0741 3.6853 19 8 1.0119 2.9687 3.6487 20 7 2.2993 1.6381 4.8712 21 6 1.8516 2.2056 6.0361 22 1 1.1231 3.0022 6.0035 23 6 2.3358 1.7565 7.2586 24 7 3.2226 0.7875 7.2982 25 14 1.7262 2.5303 8.8457 26 1 0.7380 3.5930 8.5307 27 1 1.0835 1.4901 9.6886 28 1 2.8730 3.1231 9.5798 29 1 -0.3633 0.5767 0.8505 30 1 -0.3633 0.4483 -0.9248 31 1 -0.3633 -1.0249 0.0741 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.8393 1.0415 -1.1146 35 1 4.0017 0.8290 0.6451 36 1 3.4423 3.5479 0.1253 37 1 3.9392 5.3700 0.0833 38 1 4.8472 7.6496 0.2838 39 1 8.7474 6.2401 0.1710 40 1 8.4147 3.3291 -1.1062 41 1 9.2067 3.9076 0.3791 42 1 7.8819 2.7232 0.4803 43 1 0.6613 2.1038 1.3786 44 1 2.0873 0.3853 2.4060 45 1 3.4007 1.5840 2.3261 46 1 2.9533 0.9223 4.9005 47 1 3.5603 0.4738 8.1516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714075097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:01 Heat of formation + Delta-G solvation = -39.951064 kcal Electronic energy + Delta-G solvation = -28816.917350 eV Core-core repulsion = 24806.449870 eV Total energy + Delta-G solvation = -4010.467480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.86514 -39.42164 -38.55838 -37.32966 -34.48894 -33.95922 -33.50431 -32.20071 -31.86830 -31.21265 -28.89455 -27.45082 -26.60633 -24.90755 -24.25211 -23.35564 -22.19158 -20.80801 -20.31901 -19.24685 -18.12112 -17.88474 -16.93646 -16.84794 -15.73637 -15.60916 -15.45738 -15.32051 -15.20338 -14.99791 -14.34555 -14.22726 -14.14637 -13.87558 -13.70741 -13.55198 -13.49469 -13.22984 -12.78574 -12.64521 -12.51384 -12.30525 -12.01796 -11.84124 -11.70347 -11.54383 -11.36896 -11.11902 -10.89843 -10.86960 -10.37230 -10.30204 -10.25905 -9.98498 -9.55825 -9.45399 -9.18071 -9.01653 -8.52910 -8.19931 -8.00343 -6.45191 -3.86360 0.58254 0.91009 2.79813 3.00441 3.13767 3.24827 3.31606 3.68385 3.85233 4.06142 4.24179 4.28455 4.47075 4.51769 4.59780 4.66507 4.79118 4.85490 4.93291 5.08764 5.19913 5.21889 5.22787 5.34120 5.45005 5.49350 5.52522 5.56627 5.63984 5.67713 5.70995 5.75102 5.85257 5.90774 5.93160 6.05474 6.15645 6.20548 6.21902 6.38671 6.46404 7.07667 7.43381 7.51844 7.53368 7.73311 8.02072 8.09215 8.56194 9.13810 9.49859 10.00256 10.72414 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008145 B = 0.003492 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3436.903873 B = 8017.310437 C =10121.159979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.072 3.928 4 H 0.091 0.909 5 C 0.125 3.875 6 N -0.706 5.706 7 C 0.556 3.444 8 O -0.532 6.532 9 C -0.093 4.093 10 C -0.131 4.131 11 C 0.086 3.914 12 N -0.467 5.467 13 C 0.090 3.910 14 C -0.078 4.078 15 C -0.116 4.116 16 N -0.661 5.661 17 C 0.043 3.957 18 C 0.439 3.561 19 O -0.586 6.586 20 N -0.561 5.561 21 C -0.300 4.300 22 H 0.104 0.896 23 C 0.023 3.977 24 N -0.900 5.900 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.411 0.589 37 H 0.142 0.858 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.356 0.644 44 H 0.049 0.951 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.973 2.216 -18.088 18.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.039 4.039 4 H 0.109 0.891 5 C 0.001 3.999 6 N -0.358 5.358 7 C 0.342 3.658 8 O -0.410 6.410 9 C -0.104 4.104 10 C -0.152 4.152 11 C -0.070 4.070 12 N -0.176 5.176 13 C -0.068 4.068 14 C -0.081 4.081 15 C -0.172 4.172 16 N -0.295 5.295 17 C -0.090 4.090 18 C 0.225 3.775 19 O -0.471 6.471 20 N -0.198 5.198 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.541 5.541 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.207 1.207 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.248 0.752 37 H 0.160 0.840 38 H 0.179 0.821 39 H 0.178 0.822 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.115 0.885 43 H 0.178 0.822 44 H 0.067 0.933 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.798 3.416 -18.039 18.976 hybrid contribution -1.029 -1.492 1.054 2.097 sum 3.769 1.924 -16.984 17.504 Atomic orbital electron populations 1.21758 0.95154 1.02077 1.02058 1.22194 0.96896 0.97836 1.03054 1.21942 0.94044 0.93741 0.94148 0.89114 1.21477 0.93102 0.83194 1.02096 1.45746 1.07024 1.10612 1.72377 1.18148 0.82529 0.87896 0.77191 1.90724 1.55483 1.45745 1.49067 1.20236 0.93996 0.93725 1.02411 1.22409 1.00999 0.93391 0.98358 1.22728 0.91700 0.96183 0.96390 1.67539 1.03692 1.36351 1.09994 1.22727 0.99826 0.87386 0.96821 1.21122 0.93851 0.97023 0.96106 1.20971 0.96068 0.96824 1.03370 1.60361 1.15225 1.54141 0.99799 1.21782 1.00052 0.96498 0.90655 1.19788 0.86315 0.86898 0.84537 1.90516 1.36782 1.32909 1.86874 1.41872 1.39062 1.34139 1.04678 1.19744 1.23012 1.17631 0.82601 0.87853 1.25270 0.96435 0.96544 0.99615 1.69622 1.29865 1.27425 1.27183 0.85811 0.78631 0.78952 0.81019 1.19194 1.20727 1.20702 0.92290 0.92562 0.92465 0.91262 0.91043 0.90982 0.91016 0.75187 0.84009 0.82082 0.82235 0.90519 0.91895 0.88548 0.82232 0.93335 0.89625 0.77500 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.78 37.16 0.36 -1.06 16 2 C -0.16 -1.51 5.30 -26.73 -0.14 -1.65 16 3 C 0.07 0.73 2.71 -67.71 -0.18 0.55 16 4 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 5 C 0.13 1.38 4.50 -4.04 -0.02 1.36 16 6 N -0.71 -8.27 5.34 -61.15 -0.33 -8.59 16 7 C 0.56 7.45 7.74 -12.19 -0.09 7.36 16 8 O -0.53 -8.25 13.53 5.36 0.07 -8.17 16 9 C -0.09 -1.15 5.91 -104.64 -0.62 -1.77 16 10 C -0.13 -1.42 9.60 -39.03 -0.37 -1.79 16 11 C 0.09 0.93 11.17 -17.59 -0.20 0.73 16 12 N -0.47 -5.67 10.34 -13.30 -0.14 -5.80 16 13 C 0.09 1.00 10.83 -17.59 -0.19 0.81 16 14 C -0.08 -0.93 5.93 -104.06 -0.62 -1.54 16 15 C -0.12 -1.25 8.83 36.01 0.32 -0.93 16 16 N -0.66 -9.05 5.59 -107.99 -0.60 -9.66 16 17 C 0.04 0.70 5.34 -4.98 -0.03 0.68 16 18 C 0.44 9.96 7.81 -10.98 -0.09 9.87 16 19 O -0.59 -15.15 15.68 5.55 0.09 -15.06 16 20 N -0.56 -14.02 5.29 -10.96 -0.06 -14.07 16 21 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 25 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H 0.06 0.64 6.60 -51.93 -0.34 0.29 16 30 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.76 6.16 -51.93 -0.32 0.44 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.90 6.74 -51.93 -0.35 0.55 16 36 H 0.41 4.52 6.31 -40.82 -0.26 4.26 16 37 H 0.14 1.25 6.58 -52.49 -0.35 0.91 16 38 H 0.16 1.30 8.06 -52.48 -0.42 0.88 16 39 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.54 8.05 -51.93 -0.42 0.12 16 42 H 0.10 1.26 5.97 -51.93 -0.31 0.95 16 43 H 0.36 5.20 6.59 -39.29 -0.26 4.94 16 44 H 0.05 0.74 6.10 -51.93 -0.32 0.42 16 45 H 0.09 1.41 6.61 -51.93 -0.34 1.07 16 46 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 47 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 384.39 15.07 5.79 5.79 Total: -1.00 -32.47 384.39 -8.06 -40.52 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -6.48 Total: 18.14 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -2.11 Total: 4.70 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: -0.40 Total: -61.84 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: 0.16 Total: -23.23 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.47 -8.06 -40.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714075097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.573 kcal (2) G-P(sol) polarization free energy of solvation -32.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds