Wall clock time and date at job start Tue Mar 31 2020 19:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47250 * 305.58106 * 3 2 1 5 5 C 1.53000 * 109.46986 * 185.58202 * 3 2 1 6 6 N 1.46500 * 109.47029 * 185.00192 * 5 3 2 7 7 C 1.34782 * 119.99716 * 180.02562 * 6 5 3 8 8 O 1.21511 * 120.00218 * 359.97438 * 7 6 5 9 9 C 1.48151 * 119.99475 * 180.02562 * 7 6 5 10 10 C 1.39833 * 120.92448 * 354.24251 * 9 7 6 11 11 C 1.38129 * 118.99966 * 179.97438 * 10 9 7 12 12 N 1.31826 * 120.90192 * 0.02562 * 11 10 9 13 13 C 1.31807 * 122.04677 * 359.97438 * 12 11 10 14 14 C 1.38172 * 120.89524 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.49984 * 180.02562 * 14 13 12 16 16 N 1.46900 * 109.46957 * 65.58412 * 3 2 1 17 17 C 1.46894 * 111.00364 * 64.12086 * 16 3 2 18 18 C 1.50702 * 109.47034 * 184.38690 * 17 16 3 19 19 O 1.21291 * 120.00150 * 359.97438 * 18 17 16 20 20 N 1.34783 * 119.99730 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99910 * 180.02562 * 20 18 17 22 22 H 1.07999 * 119.99864 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00016 * 180.02562 * 21 20 18 24 24 N 1.31418 * 119.99975 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99805 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47410 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47060 * 119.99903 * 25 23 21 28 28 H 1.48504 * 109.46982 * 239.99165 * 25 23 21 29 29 H 1.08996 * 109.47235 * 304.14113 * 1 2 3 30 30 H 1.09008 * 109.46787 * 64.13942 * 1 2 3 31 31 H 1.08992 * 109.47339 * 184.13686 * 1 2 3 32 32 H 1.08997 * 109.47240 * 240.00025 * 2 1 3 33 33 H 1.09003 * 109.47252 * 119.99421 * 2 1 3 34 34 H 1.08997 * 109.47371 * 64.99717 * 5 3 2 35 35 H 1.09007 * 109.47287 * 304.99691 * 5 3 2 36 36 H 0.96992 * 120.00337 * 0.02562 * 6 5 3 37 37 H 1.07993 * 120.50176 * 0.02562 * 10 9 7 38 38 H 1.08007 * 119.54775 * 180.02562 * 11 10 9 39 39 H 1.07994 * 119.55188 * 179.97438 * 13 12 11 40 40 H 1.08999 * 109.47099 * 263.29703 * 15 14 13 41 41 H 1.08995 * 109.46822 * 23.29701 * 15 14 13 42 42 H 1.08998 * 109.47093 * 143.29528 * 15 14 13 43 43 H 1.00896 * 111.00074 * 300.16341 * 16 3 2 44 44 H 1.09003 * 109.47106 * 304.38859 * 17 16 3 45 45 H 1.09004 * 109.47329 * 64.38809 * 17 16 3 46 46 H 0.97000 * 120.00297 * 359.97438 * 20 18 17 47 47 H 0.96997 * 119.99785 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5973 1.9844 -0.8358 5 6 3.5635 1.4448 -0.1403 6 7 4.0629 2.8169 -0.0206 7 6 5.3847 3.0634 -0.1133 8 8 6.1622 2.1476 -0.2957 9 6 5.8897 4.4509 0.0083 10 6 5.0069 5.5315 0.0996 11 6 5.5210 6.8086 0.2122 12 7 6.8229 7.0148 0.2335 13 6 7.6893 6.0250 0.1500 14 6 7.2621 4.7161 0.0348 15 6 8.2605 3.5912 -0.0595 16 7 1.6634 2.0950 1.2611 17 6 2.3218 1.4498 2.4048 18 6 1.8300 2.0741 3.6853 19 8 1.0119 2.9687 3.6487 20 7 2.2993 1.6381 4.8712 21 6 1.8516 2.2056 6.0361 22 1 1.1231 3.0022 6.0035 23 6 2.3358 1.7565 7.2586 24 7 3.2226 0.7875 7.2982 25 14 1.7262 2.5303 8.8457 26 1 0.7380 3.5930 8.5307 27 1 1.0835 1.4901 9.6886 28 1 2.8730 3.1231 9.5798 29 1 -0.3633 0.5767 0.8505 30 1 -0.3633 0.4483 -0.9248 31 1 -0.3633 -1.0249 0.0741 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.8393 1.0415 -1.1146 35 1 4.0017 0.8290 0.6451 36 1 3.4423 3.5479 0.1253 37 1 3.9392 5.3700 0.0833 38 1 4.8472 7.6496 0.2838 39 1 8.7474 6.2401 0.1710 40 1 8.4147 3.3291 -1.1062 41 1 9.2067 3.9076 0.3791 42 1 7.8819 2.7232 0.4803 43 1 0.6613 2.1038 1.3786 44 1 2.0873 0.3853 2.4060 45 1 3.4007 1.5840 2.3261 46 1 2.9533 0.9223 4.9005 47 1 3.5603 0.4738 8.1516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714075097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:00 Heat of formation + Delta-G solvation = -64.191367 kcal Electronic energy + Delta-G solvation = -28817.968488 eV Core-core repulsion = 24806.449870 eV Total energy + Delta-G solvation = -4011.518619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.78069 -40.56501 -39.95918 -38.63018 -35.99951 -35.41206 -34.39990 -33.34295 -33.05659 -32.82625 -29.87066 -28.46821 -27.94033 -26.18099 -25.64427 -24.19668 -23.03778 -21.87456 -21.51897 -20.67019 -19.92609 -18.94503 -18.35839 -17.81642 -17.05305 -16.68310 -16.51845 -16.41442 -16.25719 -16.17544 -15.90085 -15.76938 -15.29454 -15.02273 -14.83504 -14.61270 -14.33709 -14.28986 -14.00488 -13.64387 -13.58845 -13.54162 -13.35848 -13.25787 -12.93125 -12.72423 -12.52346 -12.41785 -12.25670 -12.12717 -11.84349 -11.68821 -11.52062 -11.28161 -10.90887 -10.38115 -10.35458 -10.10142 -10.03203 -9.90326 -9.37706 -8.48307 -5.97175 -0.33150 0.07269 1.35114 1.40688 1.54688 1.81397 2.02976 2.06457 2.27617 2.80720 2.93794 3.19234 3.45863 3.47794 3.58964 3.68368 3.78165 3.82977 3.96777 4.03096 4.14633 4.26298 4.34552 4.42307 4.45478 4.51796 4.55461 4.62121 4.70056 4.76608 4.79166 4.80101 4.84864 4.92749 5.08322 5.11552 5.24953 5.31235 5.37658 5.39644 5.46679 5.62926 5.86077 6.06398 6.37534 6.47632 6.56985 6.88734 7.10661 7.10766 7.54117 8.08092 8.69358 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008145 B = 0.003492 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3436.903873 B = 8017.310437 C =10121.159979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.156 4.156 3 C 0.082 3.918 4 H 0.115 0.885 5 C 0.125 3.875 6 N -0.699 5.699 7 C 0.551 3.449 8 O -0.559 6.559 9 C -0.112 4.112 10 C -0.131 4.131 11 C 0.080 3.920 12 N -0.486 5.486 13 C 0.088 3.912 14 C -0.091 4.091 15 C -0.109 4.109 16 N -0.664 5.664 17 C 0.063 3.937 18 C 0.439 3.561 19 O -0.618 6.618 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.081 0.919 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.992 3.008 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.273 1.273 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.415 0.585 37 H 0.160 0.840 38 H 0.187 0.813 39 H 0.185 0.815 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.353 0.647 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.394 0.606 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.808 2.478 -18.948 19.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.196 4.196 3 C -0.028 4.028 4 H 0.132 0.868 5 C 0.001 3.999 6 N -0.351 5.351 7 C 0.339 3.661 8 O -0.439 6.439 9 C -0.123 4.123 10 C -0.151 4.151 11 C -0.075 4.075 12 N -0.195 5.195 13 C -0.069 4.069 14 C -0.094 4.094 15 C -0.166 4.166 16 N -0.298 5.298 17 C -0.070 4.070 18 C 0.227 3.773 19 O -0.504 6.504 20 N -0.211 5.211 21 C -0.461 4.461 22 H 0.099 0.901 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.815 3.185 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.198 1.198 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.253 0.747 37 H 0.177 0.823 38 H 0.204 0.796 39 H 0.202 0.798 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.174 0.826 44 H 0.084 0.916 45 H 0.107 0.893 46 H 0.227 0.773 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.626 3.666 -18.920 19.819 hybrid contribution -0.999 -1.561 1.234 2.226 sum 3.627 2.106 -17.686 18.176 Atomic orbital electron populations 1.21748 0.94913 1.02182 1.02052 1.22157 0.96982 0.97003 1.03420 1.22002 0.93489 0.94526 0.92819 0.86758 1.21541 0.93417 0.82642 1.02298 1.45745 1.06626 1.11067 1.71627 1.18371 0.82790 0.88129 0.76847 1.90710 1.56146 1.46576 1.50480 1.20373 0.94779 0.93658 1.03520 1.22608 1.01726 0.93034 0.97751 1.23188 0.91790 0.96974 0.95579 1.67598 1.04409 1.36852 1.10592 1.23116 1.00978 0.86847 0.96001 1.21329 0.93943 0.97702 0.96425 1.20895 0.96762 0.95642 1.03305 1.60350 1.14795 1.54654 1.00038 1.21536 1.00009 0.96939 0.88504 1.20822 0.84898 0.85893 0.85734 1.90487 1.38013 1.34280 1.87667 1.41963 1.39642 1.34557 1.04980 1.19710 1.23842 1.18247 0.84323 0.90074 1.26042 0.96291 0.96781 1.02176 1.69688 1.30341 1.28042 1.28212 0.84886 0.78197 0.78189 0.77184 1.19535 1.19575 1.19846 0.94127 0.90991 0.92075 0.89167 0.92404 0.89580 0.92608 0.74716 0.82297 0.79631 0.79771 0.90300 0.89677 0.91033 0.82583 0.91650 0.89326 0.77315 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.78 71.98 0.70 -1.80 16 2 C -0.16 -2.59 5.30 30.60 0.16 -2.43 16 3 C 0.08 1.48 2.71 44.92 0.12 1.61 16 4 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 5 C 0.12 2.56 4.50 86.38 0.39 2.95 16 6 N -0.70 -15.66 5.34 -465.67 -2.49 -18.15 16 7 C 0.55 14.64 7.74 86.88 0.67 15.31 16 8 O -0.56 -17.46 13.53 -3.75 -0.05 -17.51 16 9 C -0.11 -2.75 5.91 -19.88 -0.12 -2.87 16 10 C -0.13 -2.70 9.60 22.63 0.22 -2.48 16 11 C 0.08 1.63 11.17 84.67 0.95 2.57 16 12 N -0.49 -11.19 10.34 -196.00 -2.03 -13.21 16 13 C 0.09 1.84 10.83 84.68 0.92 2.76 16 14 C -0.09 -2.11 5.93 -19.50 -0.12 -2.23 16 15 C -0.11 -2.33 8.83 71.24 0.63 -1.70 16 16 N -0.66 -17.39 5.59 -495.57 -2.77 -20.16 16 17 C 0.06 2.03 5.34 85.56 0.46 2.49 16 18 C 0.44 20.15 7.81 87.66 0.68 20.83 16 19 O -0.62 -32.43 15.68 -3.06 -0.05 -32.47 16 20 N -0.57 -29.28 5.29 -306.98 -1.62 -30.90 16 21 C -0.33 -18.70 9.68 84.04 0.81 -17.89 16 22 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 23 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 24 N -0.92 -50.10 13.05 21.66 0.28 -49.82 16 25 Si 0.99 42.88 29.55 68.60 2.03 44.90 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 29 H 0.04 0.82 6.60 -2.39 -0.02 0.81 16 30 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.13 6.16 -2.39 -0.01 1.12 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.35 6.74 -2.38 -0.02 1.33 16 36 H 0.41 8.55 6.31 -92.71 -0.59 7.96 16 37 H 0.16 2.57 6.58 -2.91 -0.02 2.55 16 38 H 0.19 2.64 8.06 -2.91 -0.02 2.62 16 39 H 0.19 2.72 8.06 -2.91 -0.02 2.69 16 40 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.08 1.36 8.05 -2.39 -0.02 1.34 16 42 H 0.07 1.91 5.97 -2.39 -0.01 1.90 16 43 H 0.35 9.95 6.59 -89.70 -0.59 9.36 16 44 H 0.07 1.94 6.10 -2.39 -0.01 1.92 16 45 H 0.09 2.89 6.61 -2.38 -0.02 2.87 16 46 H 0.39 19.45 7.90 -92.71 -0.73 18.72 16 47 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -70.83 384.39 -0.62 -71.45 By element: Atomic # 1 Polarization: 49.84 SS G_CDS: -0.87 Total: 48.97 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 6.95 Total: 16.89 kcal Atomic # 7 Polarization: -123.61 SS G_CDS: -8.62 Total: -132.24 kcal Atomic # 8 Polarization: -49.88 SS G_CDS: -0.10 Total: -49.98 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -70.83 -0.62 -71.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714075097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.262 kcal (2) G-P(sol) polarization free energy of solvation -70.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds