Wall clock time and date at job start Tue Mar 31 2020 19:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46923 * 2 1 4 4 H 1.08999 * 109.47082 * 55.34535 * 3 2 1 5 5 C 1.53001 * 109.46810 * 175.34489 * 3 2 1 6 6 N 1.46497 * 109.46857 * 174.99573 * 5 3 2 7 7 C 1.34775 * 120.00245 * 179.97438 * 6 5 3 8 8 O 1.21519 * 119.99773 * 0.02562 * 7 6 5 9 9 C 1.48148 * 120.00385 * 180.02562 * 7 6 5 10 10 C 1.39836 * 120.92397 * 354.05514 * 9 7 6 11 11 C 1.38122 * 119.00809 * 180.02562 * 10 9 7 12 12 N 1.31836 * 120.89164 * 359.97438 * 11 10 9 13 13 C 1.31796 * 122.05060 * 0.02562 * 12 11 10 14 14 C 1.38171 * 120.89621 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.49737 * 180.02562 * 14 13 12 16 16 N 1.46900 * 109.46826 * 295.34263 * 3 2 1 17 17 C 1.46905 * 111.00110 * 298.73976 * 16 3 2 18 18 C 1.50699 * 109.47239 * 182.66000 * 17 16 3 19 19 O 1.21292 * 119.99689 * 359.97438 * 18 17 16 20 20 N 1.34770 * 120.00240 * 180.02562 * 18 17 16 21 21 C 1.37090 * 120.00233 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00407 * 0.02562 * 21 20 18 23 23 C 1.38951 * 120.00146 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99957 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99952 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47167 * 60.00627 * 25 23 21 27 27 H 1.48503 * 109.46902 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47315 * 300.00269 * 25 23 21 29 29 H 1.09000 * 109.47024 * 185.68276 * 1 2 3 30 30 H 1.08995 * 109.47072 * 305.68288 * 1 2 3 31 31 H 1.08995 * 109.46863 * 65.68521 * 1 2 3 32 32 H 1.08995 * 109.46966 * 239.99556 * 2 1 3 33 33 H 1.09005 * 109.47037 * 119.99519 * 2 1 3 34 34 H 1.08995 * 109.47502 * 54.99993 * 5 3 2 35 35 H 1.09001 * 109.47021 * 294.99501 * 5 3 2 36 36 H 0.97002 * 120.00437 * 0.02562 * 6 5 3 37 37 H 1.08001 * 120.49703 * 0.03808 * 10 9 7 38 38 H 1.07997 * 119.55295 * 180.02562 * 11 10 9 39 39 H 1.07997 * 119.54745 * 180.02562 * 13 12 11 40 40 H 1.09001 * 109.47124 * 263.54735 * 15 14 13 41 41 H 1.08993 * 109.47537 * 23.55681 * 15 14 13 42 42 H 1.08998 * 109.47058 * 143.55369 * 15 14 13 43 43 H 1.00903 * 111.00216 * 62.69516 * 16 3 2 44 44 H 1.09005 * 109.46744 * 302.66266 * 17 16 3 45 45 H 1.09001 * 109.47088 * 62.65785 * 17 16 3 46 46 H 0.97007 * 119.99763 * 359.97438 * 20 18 17 47 47 H 0.96999 * 120.00014 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6102 1.9799 0.8453 5 6 3.5656 1.4441 0.1171 6 7 4.0631 2.8168 -0.0029 7 6 5.3861 3.0630 0.0710 8 8 6.1663 2.1462 0.2366 9 6 5.8892 4.4512 -0.0497 10 6 5.0242 5.5043 -0.3630 11 6 5.5358 6.7831 -0.4662 12 7 6.8189 7.0165 -0.2734 13 6 7.6681 6.0532 0.0235 14 6 7.2419 4.7446 0.1464 15 6 8.2205 3.6503 0.4866 16 7 1.6443 2.1017 -1.2517 17 6 2.2312 1.4209 -2.4137 18 6 1.8576 2.1619 -3.6716 19 8 1.1697 3.1588 -3.6066 20 7 2.2870 1.7163 -4.8689 21 6 1.9467 2.3901 -6.0133 22 1 1.3349 3.2782 -5.9555 23 6 2.3899 1.9310 -7.2476 24 7 3.1347 0.8507 -7.3181 25 14 1.9256 2.8487 -8.8070 26 1 2.4416 4.2393 -8.7353 27 1 2.5186 2.1603 -9.9816 28 1 0.4472 2.8757 -8.9440 29 1 -0.3633 -1.0226 0.1018 30 1 -0.3633 0.5994 0.8347 31 1 -0.3633 0.4231 -0.9365 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.9917 0.8325 -0.6782 35 1 3.8561 1.0356 1.0850 36 1 3.4403 3.5487 -0.1347 37 1 3.9718 5.3205 -0.5217 38 1 4.8756 7.6031 -0.7073 39 1 8.7110 6.2901 0.1735 40 1 8.5478 3.1580 -0.4291 41 1 9.0828 4.0797 0.9966 42 1 7.7385 2.9217 1.1385 43 1 0.6397 2.1526 -1.3318 44 1 3.3164 1.4003 -2.3128 45 1 1.8518 0.4005 -2.4668 46 1 2.8369 0.9188 -4.9209 47 1 3.4444 0.5304 -8.1797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714075098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:05 Heat of formation + Delta-G solvation = -39.876135 kcal Electronic energy + Delta-G solvation = -28847.020894 eV Core-core repulsion = 24836.556663 eV Total energy + Delta-G solvation = -4010.464231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.84120 -39.39701 -38.53504 -37.32436 -34.47774 -33.94074 -33.48562 -32.17791 -31.85751 -31.19890 -28.90233 -27.44071 -26.60602 -24.88801 -24.24216 -23.34742 -22.17254 -20.78786 -20.32073 -19.21449 -18.10098 -17.87305 -16.89143 -16.87076 -15.76360 -15.55878 -15.39557 -15.37398 -15.16398 -14.96317 -14.35696 -14.24381 -14.13655 -13.87126 -13.68643 -13.53227 -13.48424 -13.19564 -12.79868 -12.67232 -12.41342 -12.35323 -11.98527 -11.83474 -11.68315 -11.53239 -11.39745 -11.08649 -10.90481 -10.86985 -10.46291 -10.28121 -10.23656 -9.95758 -9.52351 -9.43139 -9.15539 -8.99616 -8.54955 -8.15449 -7.98948 -6.43826 -3.85003 0.60629 0.93544 2.82853 3.01944 3.18170 3.24411 3.28354 3.70383 3.87209 4.05531 4.26594 4.28027 4.49959 4.52758 4.61405 4.68747 4.79462 4.86201 4.92556 5.10986 5.20227 5.23350 5.25899 5.34662 5.46089 5.51007 5.52790 5.56832 5.66418 5.68940 5.70479 5.75986 5.82944 5.91188 5.93593 6.03476 6.14312 6.20282 6.22749 6.40375 6.48063 7.07262 7.45447 7.51800 7.52576 7.75668 8.03005 8.11477 8.58034 9.15128 9.51447 10.02344 10.73693 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008038 B = 0.003574 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3482.449316 B = 7831.780069 C =10040.614130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.091 0.909 5 C 0.126 3.874 6 N -0.705 5.705 7 C 0.556 3.444 8 O -0.533 6.533 9 C -0.093 4.093 10 C -0.130 4.130 11 C 0.086 3.914 12 N -0.467 5.467 13 C 0.089 3.911 14 C -0.079 4.079 15 C -0.115 4.115 16 N -0.660 5.660 17 C 0.043 3.957 18 C 0.440 3.560 19 O -0.585 6.585 20 N -0.562 5.562 21 C -0.301 4.301 22 H 0.102 0.898 23 C 0.024 3.976 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.411 0.589 37 H 0.144 0.856 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.094 0.906 43 H 0.354 0.646 44 H 0.086 0.914 45 H 0.048 0.952 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.528 1.665 18.282 18.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.038 4.038 4 H 0.109 0.891 5 C 0.002 3.998 6 N -0.357 5.357 7 C 0.343 3.657 8 O -0.411 6.411 9 C -0.104 4.104 10 C -0.150 4.150 11 C -0.070 4.070 12 N -0.176 5.176 13 C -0.069 4.069 14 C -0.082 4.082 15 C -0.172 4.172 16 N -0.293 5.293 17 C -0.090 4.090 18 C 0.226 3.774 19 O -0.469 6.469 20 N -0.198 5.198 21 C -0.431 4.431 22 H 0.120 0.880 23 C -0.178 4.178 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.199 1.199 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.248 0.752 37 H 0.162 0.838 38 H 0.180 0.820 39 H 0.177 0.823 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.113 0.887 43 H 0.175 0.825 44 H 0.104 0.896 45 H 0.066 0.934 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.460 2.900 18.211 18.972 hybrid contribution -1.079 -1.460 -1.103 2.124 sum 3.382 1.440 17.108 17.498 Atomic orbital electron populations 1.21756 0.95177 1.01971 1.02142 1.22204 0.96851 0.97842 1.03085 1.21948 0.94034 0.93641 0.94204 0.89139 1.21468 0.93092 0.83216 1.02058 1.45727 1.06867 1.10508 1.72572 1.18147 0.82551 0.87933 0.77104 1.90723 1.55519 1.45602 1.49269 1.20232 0.94218 0.93831 1.02136 1.22453 1.01194 0.93497 0.97879 1.22738 0.91774 0.95965 0.96495 1.67538 1.03975 1.36580 1.09498 1.22712 0.99687 0.87724 0.96751 1.21111 0.93830 0.96892 0.96359 1.20966 0.96596 0.96488 1.03151 1.60249 1.16838 1.52556 0.99652 1.21774 1.00690 0.95845 0.90650 1.19771 0.85740 0.87614 0.84301 1.90514 1.42269 1.27603 1.86522 1.41856 1.46338 1.26723 1.04913 1.19639 1.30451 1.09769 0.83215 0.87981 1.25261 0.96591 0.96511 0.99458 1.69603 1.35251 1.22615 1.26700 0.85930 0.78837 0.79315 0.80220 1.19865 1.20947 1.19898 0.92468 0.92495 0.92399 0.91014 0.91292 0.91035 0.91011 0.75168 0.83830 0.82043 0.82280 0.90311 0.92020 0.88729 0.82503 0.89581 0.93418 0.77532 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.54 37.16 0.35 -1.03 16 2 C -0.16 -1.48 5.21 -26.73 -0.14 -1.62 16 3 C 0.07 0.73 2.71 -67.71 -0.18 0.55 16 4 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 5 C 0.13 1.40 4.61 -4.04 -0.02 1.38 16 6 N -0.70 -8.45 5.35 -61.16 -0.33 -8.77 16 7 C 0.56 7.62 7.74 -12.19 -0.09 7.53 16 8 O -0.53 -8.40 13.53 5.35 0.07 -8.33 16 9 C -0.09 -1.19 5.91 -104.65 -0.62 -1.81 16 10 C -0.13 -1.48 9.60 -39.03 -0.37 -1.86 16 11 C 0.09 0.98 11.17 -17.59 -0.20 0.78 16 12 N -0.47 -5.79 10.34 -13.31 -0.14 -5.93 16 13 C 0.09 1.00 10.83 -17.59 -0.19 0.80 16 14 C -0.08 -0.95 5.93 -104.07 -0.62 -1.56 16 15 C -0.12 -1.24 8.83 36.00 0.32 -0.92 16 16 N -0.66 -8.94 5.43 -107.98 -0.59 -9.52 16 17 C 0.04 0.70 5.38 -4.97 -0.03 0.68 16 18 C 0.44 9.97 7.83 -10.99 -0.09 9.88 16 19 O -0.58 -15.07 15.84 5.55 0.09 -14.98 16 20 N -0.56 -14.03 5.29 -10.97 -0.06 -14.09 16 21 C -0.30 -8.32 9.68 -14.94 -0.14 -8.46 16 22 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 23 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 24 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 25 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.60 7.11 -51.93 -0.37 0.24 16 32 H 0.07 0.75 6.25 -51.93 -0.32 0.42 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.91 6.61 -51.93 -0.34 0.57 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.41 4.64 6.32 -40.82 -0.26 4.39 16 37 H 0.14 1.43 6.58 -52.49 -0.35 1.09 16 38 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.50 8.05 -51.93 -0.42 0.08 16 42 H 0.09 1.15 5.96 -51.93 -0.31 0.84 16 43 H 0.35 5.00 7.16 -39.29 -0.28 4.72 16 44 H 0.09 1.41 6.25 -51.93 -0.32 1.08 16 45 H 0.05 0.72 6.37 -51.93 -0.33 0.39 16 46 H 0.39 9.49 7.90 -40.82 -0.32 9.16 16 47 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 385.16 15.07 5.80 5.80 Total: -1.00 -32.48 385.16 -8.08 -40.56 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -6.52 Total: 18.18 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -2.11 Total: 4.88 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -0.38 Total: -62.08 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: 0.16 Total: -23.31 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.48 -8.08 -40.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714075098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.682 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds