Wall clock time and date at job start Tue Mar 31 2020 19:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47613 * 2 1 4 4 H 1.08997 * 109.46944 * 55.00302 * 3 2 1 5 5 C 1.52997 * 109.47433 * 175.00340 * 3 2 1 6 6 N 1.46500 * 109.47293 * 175.00146 * 5 3 2 7 7 C 1.34771 * 119.99692 * 179.71968 * 6 5 3 8 8 O 1.21281 * 120.00615 * 0.27977 * 7 6 5 9 9 C 1.50705 * 119.99919 * 180.27166 * 7 6 5 10 10 N 1.46494 * 109.47311 * 180.02562 * 9 7 6 11 11 C 1.34776 * 119.99848 * 180.02562 * 10 9 7 12 12 O 1.21588 * 120.00193 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99794 * 180.02562 * 11 10 9 14 14 C 1.39944 * 119.99807 * 175.37856 * 13 11 10 15 15 C 1.38868 * 120.06859 * 214.81106 * 14 13 11 16 16 C 1.38114 * 119.92771 * 179.76751 * 15 14 13 17 17 C 1.38284 * 120.07149 * 0.51342 * 16 15 14 18 18 C 1.38284 * 120.13831 * 359.74036 * 17 16 15 19 19 C 1.38114 * 120.06927 * 0.02562 * 18 17 16 20 20 N 1.46503 * 109.47132 * 295.00658 * 3 2 1 21 21 C 1.36934 * 120.00359 * 84.99716 * 20 3 2 22 22 H 1.07997 * 120.00015 * 0.02562 * 21 20 3 23 23 C 1.38810 * 119.99929 * 180.02562 * 21 20 3 24 24 N 1.31611 * 120.00265 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99767 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47413 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47070 * 119.99845 * 25 23 21 28 28 H 1.48503 * 109.47223 * 240.00053 * 25 23 21 29 29 H 1.09001 * 109.46963 * 59.99389 * 1 2 3 30 30 H 1.08998 * 109.47795 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46802 * 300.00135 * 1 2 3 32 32 H 1.09003 * 109.46523 * 240.00264 * 2 1 3 33 33 H 1.09001 * 109.46963 * 120.00611 * 2 1 3 34 34 H 1.08999 * 109.46730 * 54.99819 * 5 3 2 35 35 H 1.09008 * 109.46988 * 295.00367 * 5 3 2 36 36 H 0.96999 * 120.00009 * 0.02562 * 6 5 3 37 37 H 1.08997 * 109.47212 * 300.01130 * 9 7 6 38 38 H 1.09004 * 109.46572 * 60.00470 * 9 7 6 39 39 H 0.97001 * 120.00033 * 359.97438 * 10 9 7 40 40 H 0.97003 * 120.00012 * 355.38000 * 13 11 10 41 41 H 1.08001 * 120.03520 * 0.02562 * 15 14 13 42 42 H 1.07997 * 119.96334 * 180.25080 * 16 15 14 43 43 H 1.08003 * 119.93052 * 179.72003 * 17 16 15 44 44 H 1.07998 * 119.96036 * 180.02562 * 18 17 16 45 45 H 1.07996 * 120.03125 * 179.97438 * 19 18 17 46 46 H 0.97004 * 119.99515 * 264.99979 * 20 3 2 47 47 H 0.97003 * 120.00394 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6056 1.9815 0.8418 5 6 3.5649 1.4442 0.1256 6 7 4.0632 2.8167 0.0059 7 6 5.3854 3.0634 0.0919 8 8 6.1631 2.1487 0.2633 9 6 5.8975 4.4759 -0.0252 10 7 7.3571 4.4781 0.0999 11 6 8.0379 5.6389 0.0266 12 8 7.4407 6.6844 -0.1429 13 7 9.3808 5.6409 0.1412 14 6 10.0960 6.8314 -0.0312 15 6 11.3531 6.8087 -0.6207 16 6 12.0544 7.9859 -0.7938 17 6 11.5105 9.1850 -0.3711 18 6 10.2611 9.2103 0.2211 19 6 9.5528 8.0371 0.3926 20 7 1.6525 2.0975 -1.2518 21 6 0.4157 2.6736 -1.3687 22 1 -0.2738 2.6454 -0.5380 23 6 0.0483 3.2938 -2.5550 24 7 0.8888 3.3286 -3.5671 25 14 -1.6391 4.0790 -2.7147 26 1 -2.3888 3.9040 -1.4448 27 1 -1.4857 5.5275 -3.0039 28 1 -2.3846 3.4292 -3.8225 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.9954 0.8310 -0.6660 35 1 3.8500 1.0375 1.0960 36 1 3.4412 3.5483 -0.1308 37 1 5.6156 4.8854 -0.9952 38 1 5.4636 5.0864 0.7668 39 1 7.8334 3.6442 0.2363 40 1 9.8516 4.8172 0.3431 41 1 11.7802 5.8720 -0.9473 42 1 13.0304 7.9694 -1.2559 43 1 12.0628 10.1036 -0.5035 44 1 9.8389 10.1484 0.5497 45 1 8.5773 8.0575 0.8555 46 1 2.2720 2.1231 -1.9978 47 1 0.6322 3.7623 -4.3960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714090137.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:36 Heat of formation + Delta-G solvation = -50.623766 kcal Electronic energy + Delta-G solvation = -27558.218782 eV Core-core repulsion = 23547.288499 eV Total energy + Delta-G solvation = -4010.930283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.83084 -40.79904 -39.52035 -38.30482 -35.85286 -35.69688 -35.24951 -34.14461 -31.78357 -31.53218 -30.94993 -29.82097 -28.01069 -25.51853 -24.18968 -23.75275 -23.26673 -21.89480 -21.71145 -21.26769 -19.89584 -19.22461 -18.83144 -17.54829 -17.48492 -17.23424 -17.02108 -16.74407 -16.27065 -16.04365 -15.78340 -15.60638 -15.27801 -15.00245 -14.81861 -14.55197 -14.43168 -14.28900 -14.16452 -13.96148 -13.73163 -13.43937 -12.97649 -12.80369 -12.76602 -12.64062 -12.34895 -12.16520 -12.06840 -11.85952 -11.61765 -11.53848 -11.32753 -11.15517 -11.11385 -10.87093 -10.39105 -10.04855 -9.82376 -9.07195 -8.96210 -7.87419 -5.13692 0.37573 0.51272 1.31411 1.48754 1.49354 1.52072 1.59140 1.94389 2.25627 2.60324 2.93617 3.10369 3.46790 3.64453 3.91785 3.97656 4.03932 4.12480 4.28475 4.33961 4.35340 4.40766 4.50378 4.56591 4.59282 4.61577 4.67786 4.75317 4.89756 5.10236 5.12221 5.14259 5.17403 5.22550 5.34538 5.42671 5.44528 5.57995 5.60719 5.63455 5.67684 5.74092 5.85810 6.14426 6.33482 6.47879 6.83204 7.09361 7.33590 7.41768 8.14037 8.37833 9.35567 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015136 B = 0.002059 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.480195 B =13598.754390 C =15001.095015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 C 0.162 3.838 4 H 0.061 0.939 5 C 0.124 3.876 6 N -0.704 5.704 7 C 0.513 3.487 8 O -0.574 6.574 9 C 0.124 3.876 10 N -0.719 5.719 11 C 0.704 3.296 12 O -0.610 6.610 13 N -0.673 5.673 14 C 0.143 3.857 15 C -0.149 4.149 16 C -0.103 4.103 17 C -0.140 4.140 18 C -0.113 4.113 19 C -0.147 4.147 20 N -0.727 5.727 21 C -0.212 4.212 22 H 0.081 0.919 23 C -0.074 4.074 24 N -0.967 5.967 25 Si 0.956 3.044 26 H -0.265 1.265 27 H -0.300 1.300 28 H -0.303 1.303 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.414 0.586 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.415 0.585 40 H 0.423 0.577 41 H 0.147 0.853 42 H 0.154 0.846 43 H 0.146 0.854 44 H 0.135 0.865 45 H 0.117 0.883 46 H 0.373 0.627 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.790 3.947 10.810 23.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.054 3.946 4 H 0.078 0.922 5 C -0.001 4.001 6 N -0.354 5.354 7 C 0.300 3.700 8 O -0.455 6.455 9 C -0.004 4.004 10 N -0.377 5.377 11 C 0.404 3.596 12 O -0.489 6.489 13 N -0.322 5.322 14 C 0.049 3.951 15 C -0.169 4.169 16 C -0.121 4.121 17 C -0.159 4.159 18 C -0.132 4.132 19 C -0.167 4.167 20 N -0.368 5.368 21 C -0.344 4.344 22 H 0.099 0.901 23 C -0.266 4.266 24 N -0.619 5.619 25 Si 0.787 3.213 26 H -0.190 1.190 27 H -0.228 1.228 28 H -0.231 1.231 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.250 0.750 37 H 0.115 0.885 38 H 0.129 0.871 39 H 0.254 0.746 40 H 0.261 0.739 41 H 0.165 0.835 42 H 0.172 0.828 43 H 0.164 0.836 44 H 0.153 0.847 45 H 0.134 0.866 46 H 0.205 0.795 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 20.519 4.197 10.852 23.588 hybrid contribution -1.069 -0.067 -0.793 1.333 sum 19.449 4.131 10.059 22.283 Atomic orbital electron populations 1.21707 0.96134 1.00539 1.01772 1.21990 0.96518 0.97399 1.01108 1.20748 0.91092 0.93271 0.89507 0.92152 1.21610 0.94226 0.82396 1.01839 1.45861 1.06975 1.11088 1.71514 1.20526 0.82710 0.90820 0.75993 1.90643 1.56299 1.46920 1.51652 1.20869 0.80454 0.93828 1.05293 1.44588 1.06666 1.08755 1.77685 1.15907 0.82000 0.83811 0.77847 1.90935 1.68751 1.31664 1.57561 1.42361 1.04538 1.11477 1.73799 1.17771 0.92884 0.85470 0.98985 1.21187 0.94185 1.00740 1.00784 1.21336 1.00668 0.91429 0.98656 1.21489 0.95581 0.99387 0.99431 1.21305 0.95185 0.97764 0.98915 1.21353 1.00907 0.92726 1.01756 1.42585 1.15751 1.66018 1.12432 1.19522 0.92536 1.24991 0.97329 0.90124 1.25347 1.00810 1.03663 0.96799 1.69793 1.36691 1.51076 1.04319 0.85319 0.81181 0.77375 0.77398 1.18975 1.22823 1.23143 0.93347 0.92955 0.93203 0.93593 0.90531 0.92743 0.89685 0.74980 0.88476 0.87128 0.74596 0.73854 0.83505 0.82826 0.83581 0.84710 0.86551 0.79525 0.94521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 9.18 71.98 0.66 -3.99 16 2 C -0.13 -3.95 5.61 30.59 0.17 -3.78 16 3 C 0.16 5.37 2.59 44.99 0.12 5.48 16 4 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 5 C 0.12 3.64 5.23 86.38 0.45 4.09 16 6 N -0.70 -20.33 5.39 -463.06 -2.49 -22.82 16 7 C 0.51 14.39 7.90 87.66 0.69 15.08 16 8 O -0.57 -18.32 15.67 -3.03 -0.05 -18.36 16 9 C 0.12 3.06 6.15 85.64 0.53 3.59 16 10 N -0.72 -16.55 5.53 -482.30 -2.67 -19.22 16 11 C 0.70 18.14 8.41 179.05 1.51 19.65 16 12 O -0.61 -20.39 13.78 -3.99 -0.06 -20.45 16 13 N -0.67 -13.11 5.34 -317.17 -1.70 -14.80 16 14 C 0.14 3.03 6.30 38.15 0.24 3.27 16 15 C -0.15 -2.33 9.97 22.39 0.22 -2.10 16 16 C -0.10 -1.38 10.04 22.25 0.22 -1.15 16 17 C -0.14 -2.06 10.04 22.29 0.22 -1.84 16 18 C -0.11 -2.15 10.04 22.25 0.22 -1.92 16 19 C -0.15 -3.52 8.70 22.39 0.19 -3.33 16 20 N -0.73 -31.42 4.51 -322.95 -1.46 -32.88 16 21 C -0.21 -10.34 7.75 84.03 0.65 -9.69 16 22 H 0.08 3.79 7.32 -2.91 -0.02 3.77 16 23 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 24 N -0.97 -56.14 13.06 21.65 0.28 -55.86 16 25 Si 0.96 44.22 29.55 68.60 2.03 46.24 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 27 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 28 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 29 H 0.05 1.92 5.99 -2.39 -0.01 1.91 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 36 H 0.41 12.35 8.14 -92.71 -0.75 11.60 16 37 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.42 8.45 7.46 -92.71 -0.69 7.76 16 40 H 0.42 5.25 8.84 -92.71 -0.82 4.43 16 41 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 42 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 43 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 44 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 45 H 0.12 3.32 6.22 -2.91 -0.02 3.30 16 46 H 0.37 18.05 7.80 -92.71 -0.72 17.33 16 47 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -68.04 393.09 -1.49 -69.54 By element: Atomic # 1 Polarization: 50.70 SS G_CDS: -1.96 Total: 48.74 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 6.57 Total: 19.87 kcal Atomic # 7 Polarization: -137.55 SS G_CDS: -8.03 Total: -145.58 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -0.10 Total: -38.81 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -68.04 -1.49 -69.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714090137.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.913 kcal (2) G-P(sol) polarization free energy of solvation -68.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds