Wall clock time and date at job start Tue Mar 31 2020 19:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 C 1.53004 * 109.47083 * 174.99797 * 3 2 1 6 6 N 1.46502 * 109.46925 * 175.00128 * 5 3 2 7 7 C 1.34775 * 119.99947 * 180.02562 * 6 5 3 8 8 O 1.21549 * 120.00212 * 359.97438 * 7 6 5 9 9 C 1.47904 * 119.99987 * 179.97438 * 7 6 5 10 10 C 1.39429 * 120.02759 * 179.72334 * 9 7 6 11 11 N 1.32050 * 119.96017 * 179.68349 * 10 9 7 12 12 C 1.32610 * 120.00871 * 0.58439 * 11 10 9 13 13 O 1.35484 * 119.97670 * 179.68272 * 12 11 10 14 14 C 1.42902 * 116.99656 * 0.03019 * 13 12 11 15 15 C 1.53006 * 109.46920 * 179.97438 * 14 13 12 16 16 C 1.52996 * 117.50049 * 243.74371 * 15 14 13 17 17 C 1.52997 * 117.49659 * 175.08269 * 15 14 13 18 18 C 1.39589 * 120.05084 * 359.71340 * 12 11 10 19 19 N 1.31563 * 120.04088 * 359.97412 * 18 12 11 20 20 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 21 21 C 1.36943 * 119.99752 * 84.72207 * 20 3 2 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 3 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 3 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47294 * 90.00155 * 25 23 21 27 27 H 1.48499 * 109.47218 * 210.00015 * 25 23 21 28 28 H 1.48496 * 109.47166 * 329.99846 * 25 23 21 29 29 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 30 30 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 31 31 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 33 33 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 34 34 H 1.08997 * 109.47038 * 294.99798 * 5 3 2 35 35 H 1.08999 * 109.47047 * 55.00424 * 5 3 2 36 36 H 0.96997 * 120.00059 * 359.97438 * 6 5 3 37 37 H 1.08004 * 120.01735 * 359.97159 * 10 9 7 38 38 H 1.09000 * 109.47535 * 299.99214 * 14 13 12 39 39 H 1.08997 * 109.47439 * 59.99590 * 14 13 12 40 40 H 1.09001 * 115.54740 * 29.41892 * 15 14 13 41 41 H 1.09005 * 117.49879 * 0.02562 * 16 15 14 42 42 H 1.08998 * 117.49799 * 145.02002 * 16 15 14 43 43 H 1.09005 * 117.49730 * 214.97908 * 17 15 14 44 44 H 1.08997 * 117.50257 * 0.02562 * 17 15 14 45 45 H 1.07992 * 119.97944 * 179.97438 * 18 12 11 46 46 H 0.97001 * 120.00384 * 265.00562 * 20 3 2 47 47 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0629 0.0859 8 8 6.1652 2.1462 0.2578 9 6 5.8888 4.4484 -0.0355 10 6 7.2565 4.7044 0.0528 11 7 7.7047 5.9412 -0.0621 12 6 6.8533 6.9404 -0.2497 13 8 7.3134 8.2099 -0.3611 14 6 8.7269 8.3982 -0.2674 15 6 9.0542 9.8854 -0.4158 16 6 9.8885 10.3077 -1.6267 17 6 10.5121 10.3099 -0.2288 18 6 5.4834 6.6854 -0.3320 19 7 5.0352 5.4532 -0.2240 20 7 1.6525 2.0975 -1.2518 21 6 0.4135 2.6685 -1.3707 22 1 -0.2763 2.6399 -0.5402 23 6 0.0441 3.2841 -2.5588 24 7 0.8846 3.3185 -3.5712 25 14 -1.6456 4.0637 -2.7208 26 1 -1.5781 5.4847 -2.2947 27 1 -2.0903 3.9919 -4.1358 28 1 -2.6118 3.3344 -1.8607 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.8498 1.0377 1.0961 35 1 3.9954 0.8311 -0.6659 36 1 3.4410 3.5482 -0.1315 37 1 7.9493 3.8910 0.2104 38 1 9.0772 8.0438 0.7020 39 1 9.2216 7.8367 -1.0599 40 1 8.2816 10.5733 -0.0722 41 1 10.2039 9.5261 -2.3180 42 1 9.6651 11.2737 -2.0796 43 1 10.6988 11.2774 0.2374 44 1 11.2382 9.5297 -0.0004 45 1 4.7911 7.5001 -0.4845 46 1 2.2719 2.1231 -1.9978 47 1 0.6267 3.7490 -4.4012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715085551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:20 Heat of formation + Delta-G solvation = 7.538817 kcal Electronic energy + Delta-G solvation = -27859.207046 eV Core-core repulsion = 23850.798882 eV Total energy + Delta-G solvation = -4008.408164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.55172 -39.57798 -38.70423 -37.22883 -36.66827 -34.50590 -33.57675 -32.34144 -31.35460 -29.72416 -28.38212 -27.73986 -24.88925 -24.79825 -23.53566 -22.85131 -22.45840 -21.18065 -20.52391 -19.97326 -18.88589 -18.25222 -17.77493 -17.03297 -16.72287 -16.14615 -15.48501 -15.39951 -15.09746 -14.91271 -14.68521 -14.54045 -14.12640 -13.84603 -13.76630 -13.28559 -13.12550 -12.95373 -12.64763 -12.26437 -12.08217 -12.02307 -11.91006 -11.58011 -11.43408 -11.30832 -10.97634 -10.95178 -10.85049 -10.74733 -10.44301 -10.43732 -10.18488 -10.15484 -9.99595 -9.51192 -9.34485 -8.99517 -8.92469 -8.61163 -7.00412 -5.78021 -3.07120 0.36752 0.86300 2.39948 2.80703 3.30088 3.34500 3.42275 3.47958 3.49299 3.73480 3.76332 4.02395 4.18223 4.34316 4.40236 4.55288 4.57207 4.77979 4.89106 5.06903 5.09264 5.15177 5.18475 5.37343 5.41249 5.42862 5.46577 5.57942 5.63643 5.64619 5.85698 5.93410 5.96995 5.97724 6.14568 6.43816 6.54542 6.58907 6.61257 6.72158 6.83638 6.92610 7.03390 7.26530 7.42162 7.69425 7.91449 8.38736 8.44521 9.50970 10.05636 10.41359 11.43866 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013004 B = 0.002464 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.670277 B =11361.525253 C =13142.070751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.055 0.945 5 C 0.112 3.888 6 N -0.687 5.687 7 C 0.575 3.425 8 O -0.548 6.548 9 C -0.011 4.011 10 C 0.153 3.847 11 N -0.504 5.504 12 C 0.292 3.708 13 O -0.290 6.290 14 C 0.098 3.902 15 C -0.161 4.161 16 C -0.176 4.176 17 C -0.168 4.168 18 C 0.050 3.950 19 N -0.366 5.366 20 N -0.721 5.721 21 C -0.236 4.236 22 H 0.073 0.927 23 C -0.011 4.011 24 N -0.929 5.929 25 Si 0.902 3.098 26 H -0.290 1.290 27 H -0.293 1.293 28 H -0.282 1.282 29 H 0.040 0.960 30 H 0.085 0.915 31 H 0.032 0.968 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.421 0.579 37 H 0.186 0.814 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.118 0.882 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.184 0.816 46 H 0.385 0.615 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.282 9.699 8.337 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.072 0.928 5 C -0.012 4.012 6 N -0.338 5.338 7 C 0.358 3.642 8 O -0.427 6.427 9 C -0.150 4.150 10 C -0.006 4.006 11 N -0.233 5.233 12 C 0.109 3.891 13 O -0.195 6.195 14 C 0.023 3.977 15 C -0.179 4.179 16 C -0.213 4.213 17 C -0.205 4.205 18 C -0.117 4.117 19 N -0.083 5.083 20 N -0.363 5.363 21 C -0.367 4.367 22 H 0.091 0.909 23 C -0.207 4.207 24 N -0.577 5.577 25 Si 0.734 3.266 26 H -0.217 1.217 27 H -0.220 1.220 28 H -0.208 1.208 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.260 0.740 37 H 0.203 0.797 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.136 0.864 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.201 0.799 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.504 9.339 8.427 20.751 hybrid contribution -0.855 0.761 -0.570 1.279 sum 15.649 10.100 7.857 20.215 Atomic orbital electron populations 1.21771 0.95702 0.99608 1.03306 1.22068 0.96999 0.98332 1.00027 1.20570 0.89735 0.92892 0.91588 0.92754 1.21782 0.95912 0.82155 1.01360 1.45861 1.06741 1.11408 1.69793 1.17443 0.83201 0.85880 0.77685 1.90767 1.56360 1.44265 1.51266 1.22077 0.92219 0.94913 1.05781 1.23497 0.94273 0.93021 0.89854 1.68228 1.37689 1.00387 1.17032 1.21264 0.91641 0.85196 0.91036 1.86219 1.26398 1.21347 1.85513 1.22264 0.78074 0.94602 1.02747 1.22154 0.95583 0.95529 1.04642 1.23137 1.03427 1.03533 0.91163 1.23008 0.94271 1.03248 0.99985 1.23027 0.91388 0.95351 1.01888 1.68487 1.36911 0.98681 1.04189 1.42445 1.16672 1.65937 1.11218 1.19184 0.91711 1.27973 0.97809 0.90913 1.24725 0.97997 1.01582 0.96397 1.69665 1.35137 1.48990 1.03860 0.86266 0.84199 0.79365 0.76800 1.21746 1.21953 1.20805 0.94120 0.89614 0.94908 0.92493 0.93835 0.91493 0.91458 0.74024 0.79722 0.90747 0.91000 0.86441 0.88409 0.88291 0.88090 0.88368 0.79883 0.78090 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.17 37.15 0.34 -2.27 16 2 C -0.13 -2.28 5.61 -26.74 -0.15 -2.43 16 3 C 0.16 3.01 2.59 -67.93 -0.18 2.83 16 4 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 5 C 0.11 1.90 5.23 -4.04 -0.02 1.88 16 6 N -0.69 -11.99 5.38 -61.23 -0.33 -12.32 16 7 C 0.57 9.82 7.80 -12.30 -0.10 9.73 16 8 O -0.55 -10.17 16.33 5.32 0.09 -10.08 16 9 C -0.01 -0.16 6.74 -82.88 -0.56 -0.72 16 10 C 0.15 2.02 10.76 -17.01 -0.18 1.83 16 11 N -0.50 -6.38 9.37 -12.76 -0.12 -6.50 16 12 C 0.29 3.60 7.50 -16.71 -0.13 3.48 16 13 O -0.29 -3.18 10.12 -18.14 -0.18 -3.36 16 14 C 0.10 0.87 5.60 37.16 0.21 1.08 16 15 C -0.16 -1.15 6.05 -90.62 -0.55 -1.70 16 16 C -0.18 -1.10 10.18 -26.70 -0.27 -1.37 16 17 C -0.17 -0.94 10.25 -26.69 -0.27 -1.21 16 18 C 0.05 0.65 11.18 -17.16 -0.19 0.45 16 19 N -0.37 -5.58 9.70 -9.49 -0.09 -5.67 16 20 N -0.72 -16.52 4.51 -53.43 -0.24 -16.76 16 21 C -0.24 -6.01 7.74 -15.06 -0.12 -6.13 16 22 H 0.07 1.81 7.31 -52.49 -0.38 1.43 16 23 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 24 N -0.93 -26.97 13.06 55.49 0.72 -26.24 16 25 Si 0.90 21.66 29.55 -169.99 -5.02 16.63 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 1.81 5.97 -51.93 -0.31 1.50 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.42 7.82 7.48 -40.82 -0.31 7.52 16 37 H 0.19 2.13 7.64 -52.48 -0.40 1.73 16 38 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 39 H 0.07 0.64 7.84 -51.93 -0.41 0.24 16 40 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.10 0.61 8.03 -51.93 -0.42 0.19 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.18 1.88 8.06 -52.49 -0.42 1.46 16 46 H 0.39 9.72 7.80 -40.82 -0.32 9.40 16 47 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 397.32 15.07 5.99 5.99 Total: -1.00 -29.81 397.32 -8.62 -38.43 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -7.17 Total: 14.81 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -2.26 Total: 5.07 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -0.06 Total: -67.49 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.10 Total: -13.44 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.81 -8.62 -38.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715085551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.969 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds