Wall clock time and date at job start Tue Mar 31 2020 19:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 C 1.53004 * 109.47083 * 174.99797 * 3 2 1 6 6 N 1.46502 * 109.46925 * 175.00128 * 5 3 2 7 7 C 1.34775 * 119.99947 * 180.02562 * 6 5 3 8 8 O 1.21549 * 120.00212 * 359.97438 * 7 6 5 9 9 C 1.47904 * 119.99987 * 179.97438 * 7 6 5 10 10 C 1.39429 * 120.02759 * 179.72334 * 9 7 6 11 11 N 1.32050 * 119.96017 * 179.68349 * 10 9 7 12 12 C 1.32610 * 120.00871 * 0.58439 * 11 10 9 13 13 O 1.35484 * 119.97670 * 179.68272 * 12 11 10 14 14 C 1.42902 * 116.99656 * 0.03019 * 13 12 11 15 15 C 1.53006 * 109.46920 * 179.97438 * 14 13 12 16 16 C 1.52996 * 117.50049 * 243.74371 * 15 14 13 17 17 C 1.52997 * 117.49659 * 175.08269 * 15 14 13 18 18 C 1.39589 * 120.05084 * 359.71340 * 12 11 10 19 19 N 1.31563 * 120.04088 * 359.97412 * 18 12 11 20 20 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 21 21 C 1.36943 * 119.99752 * 84.72207 * 20 3 2 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 3 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 3 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47294 * 90.00155 * 25 23 21 27 27 H 1.48499 * 109.47218 * 210.00015 * 25 23 21 28 28 H 1.48496 * 109.47166 * 329.99846 * 25 23 21 29 29 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 30 30 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 31 31 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 33 33 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 34 34 H 1.08997 * 109.47038 * 294.99798 * 5 3 2 35 35 H 1.08999 * 109.47047 * 55.00424 * 5 3 2 36 36 H 0.96997 * 120.00059 * 359.97438 * 6 5 3 37 37 H 1.08004 * 120.01735 * 359.97159 * 10 9 7 38 38 H 1.09000 * 109.47535 * 299.99214 * 14 13 12 39 39 H 1.08997 * 109.47439 * 59.99590 * 14 13 12 40 40 H 1.09001 * 115.54740 * 29.41892 * 15 14 13 41 41 H 1.09005 * 117.49879 * 0.02562 * 16 15 14 42 42 H 1.08998 * 117.49799 * 145.02002 * 16 15 14 43 43 H 1.09005 * 117.49730 * 214.97908 * 17 15 14 44 44 H 1.08997 * 117.50257 * 0.02562 * 17 15 14 45 45 H 1.07992 * 119.97944 * 179.97438 * 18 12 11 46 46 H 0.97001 * 120.00384 * 265.00562 * 20 3 2 47 47 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0629 0.0859 8 8 6.1652 2.1462 0.2578 9 6 5.8888 4.4484 -0.0355 10 6 7.2565 4.7044 0.0528 11 7 7.7047 5.9412 -0.0621 12 6 6.8533 6.9404 -0.2497 13 8 7.3134 8.2099 -0.3611 14 6 8.7269 8.3982 -0.2674 15 6 9.0542 9.8854 -0.4158 16 6 9.8885 10.3077 -1.6267 17 6 10.5121 10.3099 -0.2288 18 6 5.4834 6.6854 -0.3320 19 7 5.0352 5.4532 -0.2240 20 7 1.6525 2.0975 -1.2518 21 6 0.4135 2.6685 -1.3707 22 1 -0.2763 2.6399 -0.5402 23 6 0.0441 3.2841 -2.5588 24 7 0.8846 3.3185 -3.5712 25 14 -1.6456 4.0637 -2.7208 26 1 -1.5781 5.4847 -2.2947 27 1 -2.0903 3.9919 -4.1358 28 1 -2.6118 3.3344 -1.8607 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.8498 1.0377 1.0961 35 1 3.9954 0.8311 -0.6659 36 1 3.4410 3.5482 -0.1315 37 1 7.9493 3.8910 0.2104 38 1 9.0772 8.0438 0.7020 39 1 9.2216 7.8367 -1.0599 40 1 8.2816 10.5733 -0.0722 41 1 10.2039 9.5261 -2.3180 42 1 9.6651 11.2737 -2.0796 43 1 10.6988 11.2774 0.2374 44 1 11.2382 9.5297 -0.0004 45 1 4.7911 7.5001 -0.4845 46 1 2.2719 2.1231 -1.9978 47 1 0.6267 3.7490 -4.4012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715085551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:19 Heat of formation + Delta-G solvation = -13.415849 kcal Electronic energy + Delta-G solvation = -27860.115709 eV Core-core repulsion = 23850.798882 eV Total energy + Delta-G solvation = -4009.316827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.59538 -40.74020 -39.71623 -38.25432 -37.82456 -35.66154 -35.03091 -34.08427 -32.41489 -31.45849 -29.60982 -28.83400 -26.18051 -25.79429 -25.24220 -23.87924 -23.29646 -21.92048 -21.70444 -21.45532 -19.81350 -19.52819 -19.11610 -18.65320 -17.59330 -17.05064 -16.98688 -16.57046 -16.35948 -16.09557 -15.78343 -15.70964 -15.33410 -15.08273 -14.92933 -14.69586 -14.53853 -14.16487 -14.07737 -13.74640 -13.03198 -13.01590 -12.94145 -12.77102 -12.72307 -12.43174 -12.36122 -12.33322 -12.24561 -12.09669 -11.85748 -11.61861 -11.51161 -11.42057 -11.29120 -11.00848 -10.86875 -10.43320 -10.16681 -9.84186 -8.94077 -7.84407 -5.11086 -0.71377 -0.17584 1.51576 1.52196 1.52296 1.58382 1.59409 2.08434 2.59687 2.62270 2.74211 2.84181 2.94079 3.24036 3.49576 3.68159 3.77739 3.87490 3.91654 3.95657 3.98102 4.08491 4.18813 4.38515 4.41107 4.42739 4.50524 4.50766 4.59774 4.73673 4.76214 4.82470 4.90222 4.98794 5.12502 5.15474 5.17562 5.21408 5.23365 5.43945 5.58745 5.64080 5.75873 5.81039 5.87414 6.32230 6.35592 6.58095 7.07581 7.43451 8.15467 8.39889 9.38637 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013004 B = 0.002464 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.670277 B =11361.525253 C =13142.070751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.163 3.837 4 H 0.058 0.942 5 C 0.119 3.881 6 N -0.692 5.692 7 C 0.575 3.425 8 O -0.566 6.566 9 C -0.033 4.033 10 C 0.162 3.838 11 N -0.504 5.504 12 C 0.301 3.699 13 O -0.290 6.290 14 C 0.095 3.905 15 C -0.173 4.173 16 C -0.179 4.179 17 C -0.156 4.156 18 C 0.049 3.951 19 N -0.389 5.389 20 N -0.727 5.727 21 C -0.213 4.213 22 H 0.080 0.920 23 C -0.074 4.074 24 N -0.968 5.968 25 Si 0.959 3.041 26 H -0.291 1.291 27 H -0.305 1.305 28 H -0.271 1.271 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.415 0.585 37 H 0.200 0.800 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.114 0.886 44 H 0.104 0.896 45 H 0.206 0.794 46 H 0.372 0.628 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.922 10.230 9.922 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.054 3.946 4 H 0.076 0.924 5 C -0.005 4.005 6 N -0.342 5.342 7 C 0.360 3.640 8 O -0.446 6.446 9 C -0.171 4.171 10 C 0.003 3.997 11 N -0.234 5.234 12 C 0.116 3.884 13 O -0.194 6.194 14 C 0.021 3.979 15 C -0.192 4.192 16 C -0.216 4.216 17 C -0.193 4.193 18 C -0.119 4.119 19 N -0.106 5.106 20 N -0.368 5.368 21 C -0.345 4.345 22 H 0.098 0.902 23 C -0.266 4.266 24 N -0.619 5.619 25 Si 0.790 3.210 26 H -0.218 1.218 27 H -0.232 1.232 28 H -0.196 1.196 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.253 0.747 37 H 0.217 0.783 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.136 0.864 41 H 0.114 0.886 42 H 0.125 0.875 43 H 0.132 0.868 44 H 0.122 0.878 45 H 0.223 0.777 46 H 0.203 0.797 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 17.147 9.844 10.072 22.189 hybrid contribution -0.962 0.640 -0.978 1.514 sum 16.185 10.483 9.094 21.320 Atomic orbital electron populations 1.21702 0.96045 1.00574 1.01769 1.21977 0.96575 0.97105 1.01220 1.20742 0.90876 0.93468 0.89499 0.92433 1.21725 0.94539 0.82087 1.02136 1.45884 1.06940 1.11280 1.70070 1.17670 0.82792 0.86606 0.76919 1.90742 1.56583 1.45097 1.52218 1.21863 0.93015 0.94098 1.08121 1.23658 0.93658 0.93588 0.88771 1.68306 1.37560 1.00227 1.17320 1.21360 0.91619 0.85633 0.89745 1.86239 1.27858 1.20389 1.84868 1.22449 0.76719 0.95925 1.02845 1.22148 0.96669 0.94307 1.06038 1.23218 1.03159 1.03842 0.91368 1.23115 0.92995 1.03949 0.99219 1.23381 0.92168 0.95090 1.01255 1.68412 1.37690 0.99530 1.04927 1.42568 1.15647 1.66226 1.12325 1.19483 0.92265 1.25450 0.97268 0.90217 1.25371 1.00969 1.03597 0.96697 1.69816 1.36783 1.51171 1.04179 0.85348 0.81167 0.78530 0.76001 1.21800 1.23229 1.19577 0.93254 0.93338 0.92826 0.93454 0.90407 0.89344 0.92358 0.74727 0.78312 0.90454 0.91168 0.86428 0.88565 0.87542 0.86771 0.87809 0.77737 0.79661 0.94572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 9.17 71.98 0.66 -4.17 16 2 C -0.13 -4.13 5.61 30.59 0.17 -3.96 16 3 C 0.16 5.83 2.59 44.99 0.12 5.95 16 4 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 5 C 0.12 3.92 5.23 86.38 0.45 4.38 16 6 N -0.69 -24.08 5.38 -465.91 -2.51 -26.58 16 7 C 0.58 19.64 7.80 86.80 0.68 20.32 16 8 O -0.57 -20.81 16.33 -3.87 -0.06 -20.87 16 9 C -0.03 -1.00 6.74 41.79 0.28 -0.72 16 10 C 0.16 4.17 10.76 84.95 0.91 5.09 16 11 N -0.50 -12.26 9.37 -307.07 -2.88 -15.13 16 12 C 0.30 7.10 7.50 84.90 0.64 7.74 16 13 O -0.29 -5.97 10.12 -87.84 -0.89 -6.86 16 14 C 0.10 1.56 5.60 71.98 0.40 1.96 16 15 C -0.17 -2.23 6.05 -10.79 -0.07 -2.29 16 16 C -0.18 -1.96 10.18 30.62 0.31 -1.64 16 17 C -0.16 -1.43 10.25 30.62 0.31 -1.11 16 18 C 0.05 1.22 11.18 85.06 0.95 2.17 16 19 N -0.39 -11.82 9.70 -183.94 -1.78 -13.60 16 20 N -0.73 -33.43 4.51 -322.94 -1.46 -34.88 16 21 C -0.21 -10.83 7.74 84.03 0.65 -10.18 16 22 H 0.08 3.90 7.31 -2.91 -0.02 3.88 16 23 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 24 N -0.97 -57.65 13.06 21.65 0.28 -57.37 16 25 Si 0.96 45.04 29.55 68.60 2.03 47.07 16 26 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 27 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 28 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 29 H 0.05 1.54 8.14 -2.38 -0.02 1.53 16 30 H 0.05 1.99 5.97 -2.39 -0.01 1.98 16 31 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.42 15.56 7.48 -92.71 -0.69 14.87 16 37 H 0.20 4.42 7.64 -2.91 -0.02 4.40 16 38 H 0.08 1.22 8.11 -2.39 -0.02 1.20 16 39 H 0.07 1.18 7.84 -2.39 -0.02 1.16 16 40 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.10 1.08 8.03 -2.38 -0.02 1.06 16 42 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 44 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.21 3.98 8.06 -2.91 -0.02 3.96 16 46 H 0.37 19.14 7.80 -92.71 -0.72 18.42 16 47 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -63.91 397.32 -0.74 -64.65 By element: Atomic # 1 Polarization: 44.08 SS G_CDS: -0.42 Total: 43.66 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 6.94 Total: 19.93 kcal Atomic # 7 Polarization: -139.23 SS G_CDS: -8.34 Total: -147.57 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.95 Total: -27.73 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -63.91 -0.74 -64.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715085551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.236 kcal (2) G-P(sol) polarization free energy of solvation -63.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds