Wall clock time and date at job start Tue Mar 31 2020 17:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46867 * 2 1 4 4 C 1.52999 * 109.47339 * 120.00218 * 2 1 3 5 5 C 1.52998 * 109.46842 * 174.84065 * 4 2 1 6 6 H 1.08996 * 109.47082 * 54.19455 * 5 4 2 7 7 C 1.53000 * 109.47178 * 294.18805 * 5 4 2 8 8 N 1.46498 * 109.46827 * 184.99950 * 7 5 4 9 9 C 1.36943 * 119.99882 * 179.97438 * 8 7 5 10 10 H 1.08006 * 119.99847 * 0.02562 * 9 8 7 11 11 C 1.38807 * 120.00132 * 180.02562 * 9 8 7 12 12 N 1.31615 * 120.00050 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99954 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47561 * 90.00218 * 13 11 9 15 15 H 1.48499 * 109.47137 * 210.00475 * 13 11 9 16 16 H 1.48506 * 109.47106 * 330.00128 * 13 11 9 17 17 N 1.46503 * 109.46833 * 174.18973 * 5 4 2 18 18 C 1.34770 * 120.00506 * 272.11889 * 17 5 4 19 19 O 1.21501 * 119.99724 * 5.09404 * 18 17 5 20 20 C 1.48330 * 120.00607 * 185.09676 * 18 17 5 21 21 C 1.39305 * 119.57736 * 179.97438 * 20 18 17 22 22 C 1.38444 * 119.19380 * 179.97438 * 21 20 18 23 23 C 1.39871 * 118.35488 * 359.97438 * 22 21 20 24 24 C 1.48005 * 120.46180 * 179.97438 * 23 22 21 25 25 N 1.34776 * 120.00499 * 179.97438 * 24 23 22 26 26 O 1.21533 * 119.99828 * 0.02562 * 24 23 22 27 27 C 1.39721 * 119.07879 * 0.02562 * 23 22 21 28 28 N 1.31418 * 120.71540 * 359.73608 * 27 23 22 29 29 H 1.09002 * 109.47259 * 299.99563 * 1 2 3 30 30 H 1.08999 * 109.47627 * 60.00295 * 1 2 3 31 31 H 1.09000 * 109.47201 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47259 * 240.00437 * 2 1 3 33 33 H 1.09008 * 109.47085 * 65.53386 * 3 2 1 34 34 H 1.08996 * 109.47157 * 185.53720 * 3 2 1 35 35 H 1.08996 * 109.47340 * 305.53786 * 3 2 1 36 36 H 1.08996 * 109.47085 * 54.83885 * 4 2 1 37 37 H 1.09006 * 109.47097 * 294.83897 * 4 2 1 38 38 H 1.08996 * 109.46578 * 65.00706 * 7 5 4 39 39 H 1.08993 * 109.47236 * 305.00662 * 7 5 4 40 40 H 0.96993 * 120.00206 * 0.02562 * 8 7 5 41 41 H 0.97000 * 120.00313 * 179.97438 * 12 11 9 42 42 H 0.97007 * 119.99786 * 92.11833 * 17 5 4 43 43 H 1.08004 * 120.39874 * 359.95289 * 21 20 18 44 44 H 1.07995 * 120.82246 * 180.02562 * 22 21 20 45 45 H 0.97005 * 119.99370 * 0.02562 * 25 24 23 46 46 H 0.97000 * 120.00510 * 180.02562 * 25 24 23 47 47 H 1.08007 * 119.64417 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5645 -0.8345 1.1859 6 1 3.9963 0.1548 1.0349 7 6 3.9603 -1.7469 0.0232 8 7 5.4109 -1.9512 0.0349 9 6 5.9991 -2.7388 -0.9186 10 1 5.3936 -3.2089 -1.6795 11 6 7.3735 -2.9329 -0.9073 12 7 8.1113 -2.3605 0.0202 13 14 8.1759 -4.0066 -2.2083 14 1 8.5537 -3.1706 -3.3760 15 1 9.3915 -4.6449 -1.6426 16 1 7.2204 -5.0580 -2.6407 17 7 4.0647 -1.3991 2.4418 18 6 4.3527 -0.5873 3.4783 19 8 4.1108 0.6012 3.4044 20 6 4.9649 -1.1444 4.7091 21 6 5.2593 -0.2970 5.7749 22 6 5.8301 -0.8255 6.9201 23 6 6.0891 -2.1994 6.9600 24 6 6.6988 -2.8135 8.1607 25 7 6.9438 -4.1385 8.1894 26 8 6.9776 -2.1231 9.1212 27 6 5.7652 -2.9840 5.8502 28 7 5.2199 -2.4447 4.7830 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.7597 1.9270 0.9355 34 1 3.1254 1.4442 -0.0992 35 1 1.5979 1.9842 -0.8362 36 1 1.6032 -1.7188 1.2966 37 1 1.7541 -0.1569 2.1368 38 1 3.6663 -1.2834 -0.9185 39 1 3.4570 -2.7079 0.1279 40 1 5.9546 -1.5294 0.7184 41 1 9.0717 -2.4964 0.0284 42 1 4.1887 -2.3574 2.5274 43 1 5.0452 0.7595 5.7083 44 1 6.0688 -0.1927 7.7621 45 1 6.7209 -4.6896 7.4229 46 1 7.3431 -4.5410 8.9765 47 1 5.9608 -4.0460 5.8713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715390243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:51 Heat of formation + Delta-G solvation = -41.356789 kcal Electronic energy + Delta-G solvation = -28618.003519 eV Core-core repulsion = 24607.475082 eV Total energy + Delta-G solvation = -4010.528437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.98072 -39.71638 -38.72542 -37.16461 -34.86034 -34.24025 -33.65281 -32.76381 -31.63354 -30.93601 -29.07144 -27.02244 -25.77509 -25.47807 -23.84284 -22.88430 -22.00870 -21.14569 -20.38551 -19.45221 -18.62569 -18.01158 -17.43205 -16.95861 -16.40741 -15.58851 -15.46056 -15.31470 -15.24129 -14.80190 -14.65243 -14.43372 -14.00284 -13.79148 -13.57938 -13.37967 -13.22747 -13.20855 -12.83143 -12.76939 -12.26791 -12.17575 -11.89815 -11.66090 -11.09982 -10.88596 -10.79619 -10.77285 -10.68851 -10.48293 -10.26844 -10.20711 -10.14014 -10.09648 -10.00642 -9.74795 -9.56481 -9.45959 -8.91082 -8.67064 -6.95213 -5.77654 -3.07302 0.08484 0.98226 2.29410 3.00341 3.06502 3.25035 3.41924 3.47120 3.48584 3.78952 3.93584 4.43522 4.48618 4.56473 4.66705 4.74616 4.97180 5.01003 5.06218 5.11703 5.39164 5.40490 5.54714 5.56563 5.69085 5.73435 5.75459 5.78435 5.84541 5.93087 6.01384 6.11573 6.17969 6.20766 6.22317 6.35343 6.38384 6.43805 6.50368 6.58744 6.70100 6.89940 6.90413 7.42274 7.67796 7.83259 7.85990 8.38621 8.40379 9.51713 10.07944 10.43159 11.44584 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007304 B = 0.003813 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3832.476914 B = 7342.157658 C =10466.574983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.119 4.119 5 C 0.133 3.867 6 H 0.093 0.907 7 C 0.145 3.855 8 N -0.730 5.730 9 C -0.241 4.241 10 H 0.070 0.930 11 C -0.011 4.011 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.686 5.686 18 C 0.567 3.433 19 O -0.535 6.535 20 C 0.116 3.884 21 C -0.122 4.122 22 C -0.021 4.021 23 C -0.181 4.181 24 C 0.572 3.428 25 N -0.847 5.847 26 O -0.537 6.537 27 C 0.138 3.862 28 N -0.451 5.451 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.037 0.963 39 H 0.024 0.976 40 H 0.385 0.615 41 H 0.254 0.746 42 H 0.414 0.586 43 H 0.157 0.843 44 H 0.154 0.846 45 H 0.404 0.596 46 H 0.407 0.593 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.490 -0.764 12.572 16.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.158 4.158 5 C 0.029 3.971 6 H 0.111 0.889 7 C 0.017 3.983 8 N -0.375 5.375 9 C -0.372 4.372 10 H 0.088 0.912 11 C -0.207 4.207 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.335 5.335 18 C 0.351 3.649 19 O -0.412 6.412 20 C -0.022 4.022 21 C -0.142 4.142 22 C -0.047 4.047 23 C -0.187 4.187 24 C 0.357 3.643 25 N -0.412 5.412 26 O -0.414 6.414 27 C -0.024 4.024 28 N -0.162 5.162 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.042 0.958 40 H 0.220 0.780 41 H 0.064 0.936 42 H 0.251 0.749 43 H 0.175 0.825 44 H 0.172 0.828 45 H 0.233 0.767 46 H 0.239 0.761 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.738 0.052 12.118 16.191 hybrid contribution 1.215 -1.002 0.169 1.584 sum -9.524 -0.950 12.287 15.575 Atomic orbital electron populations 1.21822 0.95553 1.01405 1.01369 1.21129 0.95266 0.96645 0.98519 1.21874 1.01672 0.95690 1.01284 1.21980 0.94927 1.00632 0.98286 1.21458 0.93318 0.99338 0.83016 0.88905 1.21017 0.87447 0.95602 0.94271 1.42340 1.00565 1.59348 1.35263 1.19201 0.90512 1.21721 1.05790 0.91166 1.24729 0.96279 1.00899 0.98802 1.69671 1.05075 1.47863 1.35238 0.86211 0.78924 0.80048 0.81101 1.21749 1.21847 1.20758 1.45835 1.63726 1.11619 1.12331 1.17824 0.78468 0.86002 0.82628 1.90767 1.53920 1.15090 1.81454 1.21553 0.96143 0.89667 0.94869 1.22161 0.97457 1.02480 0.92136 1.21735 0.91592 0.93644 0.97727 1.21074 1.05178 0.95975 0.96462 1.18051 0.77443 0.82329 0.86491 1.43731 1.66448 1.08672 1.22320 1.90825 1.52317 1.61855 1.36444 1.22928 0.92240 1.00056 0.87160 1.67624 1.10809 1.12276 1.25472 0.93012 0.92898 0.92877 0.90389 0.92768 0.92099 0.93137 0.91789 0.91622 0.94548 0.95828 0.78044 0.93564 0.74894 0.82532 0.82837 0.76652 0.76107 0.81869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.19 37.16 0.34 -1.16 16 2 C -0.10 -1.20 2.80 -90.62 -0.25 -1.45 16 3 C -0.15 -1.88 8.82 37.16 0.33 -1.56 16 4 C -0.12 -1.62 4.46 -26.73 -0.12 -1.74 16 5 C 0.13 2.20 2.08 -67.93 -0.14 2.06 16 6 H 0.09 1.72 5.86 -51.93 -0.30 1.41 16 7 C 0.14 2.77 5.49 -4.04 -0.02 2.74 16 8 N -0.73 -17.94 5.43 -59.91 -0.33 -18.27 16 9 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 10 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 11 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 12 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 13 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 N -0.69 -11.36 4.47 -54.60 -0.24 -11.60 16 18 C 0.57 9.55 7.80 -12.11 -0.09 9.45 16 19 O -0.54 -9.94 15.98 5.36 0.09 -9.85 16 20 C 0.12 1.71 6.75 -82.94 -0.56 1.15 16 21 C -0.12 -1.53 9.62 -39.11 -0.38 -1.91 16 22 C -0.02 -0.23 9.71 -38.89 -0.38 -0.61 16 23 C -0.18 -1.97 5.90 -104.73 -0.62 -2.59 16 24 C 0.57 6.01 8.06 -12.26 -0.10 5.91 16 25 N -0.85 -5.36 8.83 30.57 0.27 -5.09 16 26 O -0.54 -7.53 17.25 5.34 0.09 -7.44 16 27 C 0.14 1.49 10.71 -17.17 -0.18 1.30 16 28 N -0.45 -6.27 9.53 -9.48 -0.09 -6.36 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 1.02 6.48 -51.93 -0.34 0.68 16 33 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 34 H 0.06 0.87 6.72 -51.93 -0.35 0.52 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.04 0.70 6.72 -51.93 -0.35 0.35 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.39 10.22 7.33 -40.82 -0.30 9.92 16 41 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.41 6.86 7.97 -40.82 -0.33 6.54 16 43 H 0.16 1.82 7.63 -52.48 -0.40 1.42 16 44 H 0.15 1.51 7.73 -52.49 -0.41 1.10 16 45 H 0.40 1.57 6.89 -40.82 -0.28 1.29 16 46 H 0.41 2.00 8.93 -40.82 -0.36 1.63 16 47 H 0.16 1.14 6.41 -52.48 -0.34 0.81 16 LS Contribution 392.22 15.07 5.91 5.91 Total: -1.00 -34.51 392.22 -7.70 -42.21 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -6.68 Total: 16.07 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -2.42 Total: 4.48 kcal Atomic # 7 Polarization: -68.78 SS G_CDS: 0.33 Total: -68.45 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: 0.18 Total: -17.29 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.51 -7.70 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715390243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.855 kcal (2) G-P(sol) polarization free energy of solvation -34.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds