Wall clock time and date at job start Tue Mar 31 2020 17:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46867 * 2 1 4 4 C 1.52999 * 109.47339 * 120.00218 * 2 1 3 5 5 C 1.52998 * 109.46842 * 174.84065 * 4 2 1 6 6 H 1.08996 * 109.47082 * 54.19455 * 5 4 2 7 7 C 1.53000 * 109.47178 * 294.18805 * 5 4 2 8 8 N 1.46498 * 109.46827 * 184.99950 * 7 5 4 9 9 C 1.36943 * 119.99882 * 179.97438 * 8 7 5 10 10 H 1.08006 * 119.99847 * 0.02562 * 9 8 7 11 11 C 1.38807 * 120.00132 * 180.02562 * 9 8 7 12 12 N 1.31615 * 120.00050 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99954 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47561 * 90.00218 * 13 11 9 15 15 H 1.48499 * 109.47137 * 210.00475 * 13 11 9 16 16 H 1.48506 * 109.47106 * 330.00128 * 13 11 9 17 17 N 1.46503 * 109.46833 * 174.18973 * 5 4 2 18 18 C 1.34770 * 120.00506 * 272.11889 * 17 5 4 19 19 O 1.21501 * 119.99724 * 5.09404 * 18 17 5 20 20 C 1.48330 * 120.00607 * 185.09676 * 18 17 5 21 21 C 1.39305 * 119.57736 * 179.97438 * 20 18 17 22 22 C 1.38444 * 119.19380 * 179.97438 * 21 20 18 23 23 C 1.39871 * 118.35488 * 359.97438 * 22 21 20 24 24 C 1.48005 * 120.46180 * 179.97438 * 23 22 21 25 25 N 1.34776 * 120.00499 * 179.97438 * 24 23 22 26 26 O 1.21533 * 119.99828 * 0.02562 * 24 23 22 27 27 C 1.39721 * 119.07879 * 0.02562 * 23 22 21 28 28 N 1.31418 * 120.71540 * 359.73608 * 27 23 22 29 29 H 1.09002 * 109.47259 * 299.99563 * 1 2 3 30 30 H 1.08999 * 109.47627 * 60.00295 * 1 2 3 31 31 H 1.09000 * 109.47201 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47259 * 240.00437 * 2 1 3 33 33 H 1.09008 * 109.47085 * 65.53386 * 3 2 1 34 34 H 1.08996 * 109.47157 * 185.53720 * 3 2 1 35 35 H 1.08996 * 109.47340 * 305.53786 * 3 2 1 36 36 H 1.08996 * 109.47085 * 54.83885 * 4 2 1 37 37 H 1.09006 * 109.47097 * 294.83897 * 4 2 1 38 38 H 1.08996 * 109.46578 * 65.00706 * 7 5 4 39 39 H 1.08993 * 109.47236 * 305.00662 * 7 5 4 40 40 H 0.96993 * 120.00206 * 0.02562 * 8 7 5 41 41 H 0.97000 * 120.00313 * 179.97438 * 12 11 9 42 42 H 0.97007 * 119.99786 * 92.11833 * 17 5 4 43 43 H 1.08004 * 120.39874 * 359.95289 * 21 20 18 44 44 H 1.07995 * 120.82246 * 180.02562 * 22 21 20 45 45 H 0.97005 * 119.99370 * 0.02562 * 25 24 23 46 46 H 0.97000 * 120.00510 * 180.02562 * 25 24 23 47 47 H 1.08007 * 119.64417 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5645 -0.8345 1.1859 6 1 3.9963 0.1548 1.0349 7 6 3.9603 -1.7469 0.0232 8 7 5.4109 -1.9512 0.0349 9 6 5.9991 -2.7388 -0.9186 10 1 5.3936 -3.2089 -1.6795 11 6 7.3735 -2.9329 -0.9073 12 7 8.1113 -2.3605 0.0202 13 14 8.1759 -4.0066 -2.2083 14 1 8.5537 -3.1706 -3.3760 15 1 9.3915 -4.6449 -1.6426 16 1 7.2204 -5.0580 -2.6407 17 7 4.0647 -1.3991 2.4418 18 6 4.3527 -0.5873 3.4783 19 8 4.1108 0.6012 3.4044 20 6 4.9649 -1.1444 4.7091 21 6 5.2593 -0.2970 5.7749 22 6 5.8301 -0.8255 6.9201 23 6 6.0891 -2.1994 6.9600 24 6 6.6988 -2.8135 8.1607 25 7 6.9438 -4.1385 8.1894 26 8 6.9776 -2.1231 9.1212 27 6 5.7652 -2.9840 5.8502 28 7 5.2199 -2.4447 4.7830 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.7597 1.9270 0.9355 34 1 3.1254 1.4442 -0.0992 35 1 1.5979 1.9842 -0.8362 36 1 1.6032 -1.7188 1.2966 37 1 1.7541 -0.1569 2.1368 38 1 3.6663 -1.2834 -0.9185 39 1 3.4570 -2.7079 0.1279 40 1 5.9546 -1.5294 0.7184 41 1 9.0717 -2.4964 0.0284 42 1 4.1887 -2.3574 2.5274 43 1 5.0452 0.7595 5.7083 44 1 6.0688 -0.1927 7.7621 45 1 6.7209 -4.6896 7.4229 46 1 7.3431 -4.5410 8.9765 47 1 5.9608 -4.0460 5.8713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715390243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:49 Heat of formation + Delta-G solvation = -67.941628 kcal Electronic energy + Delta-G solvation = -28619.156324 eV Core-core repulsion = 24607.475082 eV Total energy + Delta-G solvation = -4011.681242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.98937 -40.84709 -39.75166 -38.43645 -36.34127 -35.21657 -35.01480 -33.82918 -32.94919 -32.41083 -30.46715 -27.98525 -27.20406 -26.74336 -24.77679 -24.57361 -23.29699 -22.19311 -21.54933 -20.61167 -19.63953 -19.17580 -18.83438 -18.27323 -17.44938 -16.91132 -16.68851 -16.38528 -16.21051 -16.04638 -15.88245 -15.72284 -15.28351 -15.04692 -14.99124 -14.66750 -14.36820 -14.28801 -14.18017 -13.92174 -13.66709 -13.35972 -13.15952 -12.93200 -12.75548 -12.61438 -12.21396 -12.00809 -11.91553 -11.75750 -11.63586 -11.56207 -11.41018 -11.27727 -11.16568 -10.92617 -10.80760 -10.63411 -10.44401 -9.98885 -8.98380 -7.91753 -5.21288 -0.91022 0.05938 1.27277 1.49216 1.50689 1.58923 1.92266 2.04749 2.34532 2.57705 2.75363 2.95485 3.42488 3.56312 3.58233 3.72207 3.76203 3.89523 3.91261 3.98546 4.07788 4.19019 4.22318 4.41231 4.53078 4.59116 4.77489 4.78969 4.81249 4.84609 4.92104 4.96512 5.01816 5.06776 5.14629 5.16058 5.27995 5.36680 5.48228 5.50713 5.53513 5.58331 5.78942 6.27019 6.28165 6.33592 6.63613 7.08347 7.16126 7.35665 8.09060 8.32989 9.31315 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007304 B = 0.003813 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3832.476914 B = 7342.157658 C =10466.574983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.107 4.107 5 C 0.142 3.858 6 H 0.069 0.931 7 C 0.147 3.853 8 N -0.742 5.742 9 C -0.242 4.242 10 H 0.079 0.921 11 C -0.072 4.072 12 N -0.968 5.968 13 Si 0.971 3.029 14 H -0.291 1.291 15 H -0.298 1.298 16 H -0.266 1.266 17 N -0.686 5.686 18 C 0.563 3.437 19 O -0.561 6.561 20 C 0.091 3.909 21 C -0.121 4.121 22 C -0.020 4.020 23 C -0.175 4.175 24 C 0.573 3.427 25 N -0.823 5.823 26 O -0.576 6.576 27 C 0.140 3.860 28 N -0.471 5.471 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.037 0.963 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.043 0.957 39 H 0.036 0.964 40 H 0.372 0.628 41 H 0.249 0.751 42 H 0.414 0.586 43 H 0.160 0.840 44 H 0.168 0.832 45 H 0.418 0.582 46 H 0.418 0.582 47 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.514 -2.479 12.630 17.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.146 4.146 5 C 0.037 3.963 6 H 0.087 0.913 7 C 0.021 3.979 8 N -0.385 5.385 9 C -0.373 4.373 10 H 0.097 0.903 11 C -0.264 4.264 12 N -0.619 5.619 13 Si 0.801 3.199 14 H -0.219 1.219 15 H -0.224 1.224 16 H -0.191 1.191 17 N -0.335 5.335 18 C 0.348 3.652 19 O -0.440 6.440 20 C -0.046 4.046 21 C -0.142 4.142 22 C -0.046 4.046 23 C -0.181 4.181 24 C 0.358 3.642 25 N -0.388 5.388 26 O -0.456 6.456 27 C -0.021 4.021 28 N -0.182 5.182 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.204 0.796 41 H 0.058 0.942 42 H 0.251 0.749 43 H 0.178 0.822 44 H 0.185 0.815 45 H 0.251 0.749 46 H 0.251 0.749 47 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -11.817 -1.719 12.142 17.030 hybrid contribution 1.510 -0.501 0.199 1.603 sum -10.307 -2.220 12.341 16.232 Atomic orbital electron populations 1.21774 0.93484 1.02253 1.02113 1.21135 0.96948 0.95925 0.97466 1.21850 1.00225 0.96404 1.01836 1.21892 0.92390 1.01548 0.98814 1.21312 0.95253 0.97348 0.82357 0.91266 1.21145 0.84599 0.96616 0.95590 1.42515 1.02633 1.58911 1.34427 1.19626 0.90887 1.20957 1.05866 0.90282 1.25517 0.97026 1.02833 1.01045 1.69840 1.04832 1.49884 1.37345 0.85170 0.77797 0.78573 0.78375 1.21863 1.22428 1.19099 1.45824 1.63798 1.11562 1.12280 1.18188 0.78001 0.85726 0.83294 1.90735 1.55084 1.16064 1.82164 1.21329 0.98026 0.90634 0.94621 1.22204 0.97393 1.02513 0.92040 1.21925 0.90889 0.94302 0.97485 1.21235 1.04228 0.95896 0.96696 1.17975 0.77290 0.83314 0.85653 1.43563 1.64689 1.07308 1.23236 1.90818 1.54215 1.63014 1.37569 1.23512 0.90889 1.01682 0.86063 1.67586 1.11789 1.11923 1.26891 0.92679 0.91787 0.91990 0.90870 0.93012 0.94429 0.91542 0.90401 0.92068 0.93967 0.94564 0.79567 0.94245 0.74898 0.82203 0.81494 0.74945 0.74854 0.78094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.19 71.98 0.66 -1.92 16 2 C -0.10 -2.27 2.80 -10.79 -0.03 -2.30 16 3 C -0.15 -3.68 8.82 71.98 0.63 -3.05 16 4 C -0.11 -2.85 4.46 30.59 0.14 -2.71 16 5 C 0.14 4.76 2.08 44.99 0.09 4.86 16 6 H 0.07 2.68 5.86 -2.39 -0.01 2.67 16 7 C 0.15 5.60 5.49 86.38 0.47 6.07 16 8 N -0.74 -36.78 5.43 -343.46 -1.87 -38.65 16 9 C -0.24 -13.12 9.99 84.03 0.84 -12.28 16 10 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 11 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 12 N -0.97 -58.93 13.06 21.65 0.28 -58.65 16 13 Si 0.97 45.35 29.55 68.60 2.03 47.38 16 14 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 15 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 17 N -0.69 -23.23 4.47 -444.95 -1.99 -25.22 16 18 C 0.56 19.61 7.80 86.93 0.68 20.28 16 19 O -0.56 -21.74 15.98 -3.72 -0.06 -21.79 16 20 C 0.09 2.74 6.75 41.96 0.28 3.02 16 21 C -0.12 -3.07 9.62 22.58 0.22 -2.86 16 22 C -0.02 -0.43 9.71 22.71 0.22 -0.21 16 23 C -0.18 -3.56 5.90 -19.93 -0.12 -3.68 16 24 C 0.57 11.00 8.06 86.83 0.70 11.70 16 25 N -0.82 -8.20 8.83 -175.49 -1.55 -9.75 16 26 O -0.58 -15.49 17.25 -3.82 -0.07 -15.56 16 27 C 0.14 2.79 10.71 85.11 0.91 3.71 16 28 N -0.47 -12.91 9.53 -183.91 -1.75 -14.66 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.81 6.48 -2.39 -0.02 1.80 16 33 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.04 1.11 6.72 -2.39 -0.02 1.09 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.04 1.59 6.72 -2.39 -0.02 1.57 16 39 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.37 20.28 7.33 -92.71 -0.68 19.60 16 41 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 42 H 0.41 13.91 7.97 -92.70 -0.74 13.18 16 43 H 0.16 3.85 7.63 -2.91 -0.02 3.83 16 44 H 0.17 3.17 7.73 -2.91 -0.02 3.14 16 45 H 0.42 1.86 6.89 -92.70 -0.64 1.22 16 46 H 0.42 2.98 8.93 -92.71 -0.83 2.15 16 47 H 0.20 2.20 6.41 -2.91 -0.02 2.18 16 Total: -1.00 -75.23 392.22 -0.64 -75.87 By element: Atomic # 1 Polarization: 45.83 SS G_CDS: -1.84 Total: 43.99 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 6.17 Total: 17.04 kcal Atomic # 7 Polarization: -140.05 SS G_CDS: -6.88 Total: -146.93 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -0.13 Total: -37.35 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -75.23 -0.64 -75.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715390243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.927 kcal (2) G-P(sol) polarization free energy of solvation -75.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds