Wall clock time and date at job start Tue Mar 31 2020 17:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47043 * 2 1 4 4 C 1.52998 * 109.47041 * 119.99583 * 2 1 3 5 5 C 1.52997 * 109.47119 * 66.13511 * 4 2 1 6 6 H 1.08997 * 109.47166 * 304.06909 * 5 4 2 7 7 C 1.52998 * 109.47471 * 64.06965 * 5 4 2 8 8 N 1.46499 * 109.47120 * 175.00152 * 7 5 4 9 9 C 1.36943 * 119.99649 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00154 * 0.02562 * 9 8 7 11 11 C 1.38810 * 119.99823 * 179.97438 * 9 8 7 12 12 N 1.31621 * 120.00286 * 180.02562 * 11 9 8 13 13 Si 1.86808 * 120.00075 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47171 * 89.99844 * 13 11 9 15 15 H 1.48501 * 109.47146 * 210.00253 * 13 11 9 16 16 H 1.48503 * 109.47027 * 329.99864 * 13 11 9 17 17 N 1.46505 * 109.47273 * 184.06981 * 5 4 2 18 18 C 1.34784 * 119.99580 * 88.09440 * 17 5 4 19 19 O 1.21483 * 120.00189 * 354.78921 * 18 17 5 20 20 C 1.48331 * 119.99371 * 174.79178 * 18 17 5 21 21 C 1.39308 * 119.56946 * 179.97438 * 20 18 17 22 22 C 1.38446 * 119.19057 * 179.97438 * 21 20 18 23 23 C 1.39874 * 118.35913 * 0.26033 * 22 21 20 24 24 C 1.48006 * 120.46209 * 179.74775 * 23 22 21 25 25 N 1.34773 * 119.99838 * 179.97438 * 24 23 22 26 26 O 1.21528 * 120.00135 * 359.97438 * 24 23 22 27 27 C 1.39728 * 119.07234 * 359.47118 * 23 22 21 28 28 N 1.31412 * 120.71706 * 0.53984 * 27 23 22 29 29 H 1.09001 * 109.47682 * 63.69160 * 1 2 3 30 30 H 1.09004 * 109.47187 * 183.68825 * 1 2 3 31 31 H 1.09002 * 109.47334 * 303.69036 * 1 2 3 32 32 H 1.09004 * 109.47182 * 239.99965 * 2 1 3 33 33 H 1.09000 * 109.47291 * 179.97438 * 3 2 1 34 34 H 1.09008 * 109.47135 * 299.99902 * 3 2 1 35 35 H 1.08996 * 109.47624 * 59.99524 * 3 2 1 36 36 H 1.08995 * 109.47595 * 306.12954 * 4 2 1 37 37 H 1.09006 * 109.47346 * 186.13263 * 4 2 1 38 38 H 1.09000 * 109.47135 * 295.00490 * 7 5 4 39 39 H 1.09000 * 109.47140 * 54.99871 * 7 5 4 40 40 H 0.96997 * 120.00450 * 0.02562 * 8 7 5 41 41 H 0.96996 * 119.99829 * 179.97438 * 12 11 9 42 42 H 0.96998 * 120.00288 * 268.09939 * 17 5 4 43 43 H 1.08003 * 120.40340 * 0.02582 * 21 20 18 44 44 H 1.08000 * 120.82224 * 179.97438 * 22 21 20 45 45 H 0.96997 * 120.00140 * 0.02562 * 25 24 23 46 46 H 0.97002 * 120.00397 * 179.97438 * 25 24 23 47 47 H 1.07999 * 119.64061 * 180.24847 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6597 -2.2012 1.1747 6 1 0.5813 -2.2933 1.0454 7 6 2.3730 -2.8519 -0.0122 8 7 2.1042 -4.2921 -0.0136 9 6 2.6416 -5.0878 -0.9900 10 1 3.2638 -4.6538 -1.7587 11 6 2.3874 -6.4524 -0.9911 12 7 2.9043 -7.2174 -1.9293 13 14 1.3118 -7.2033 0.3388 14 1 -0.1053 -7.1907 -0.1049 15 1 1.7395 -8.6030 0.5899 16 1 1.4461 -6.4130 1.5889 17 7 2.0619 -2.8719 2.4136 18 6 1.2210 -2.9033 3.4664 19 8 0.1699 -2.2959 3.4226 20 6 1.5793 -3.6794 4.6786 21 6 0.7038 -3.7054 5.7620 22 6 1.0458 -4.4328 6.8892 23 6 2.2683 -5.1124 6.8958 24 6 2.6829 -5.8995 8.0786 25 7 3.8626 -6.5511 8.0747 26 8 1.9595 -5.9583 9.0534 27 6 3.0900 -5.0425 5.7678 28 7 2.7292 -4.3409 4.7169 29 1 -0.3634 0.4555 -0.9212 30 1 -0.3634 -1.0256 0.0661 31 1 -0.3634 0.5701 0.8551 32 1 1.8933 -0.5139 -0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.5898 -0.2746 2.1358 37 1 3.1244 -0.6271 1.3059 38 1 2.0076 -2.4132 -0.9407 39 1 3.4465 -2.6827 0.0718 40 1 1.5451 -4.6819 0.6765 41 1 2.7269 -8.1710 -1.9298 42 1 2.9334 -3.2932 2.4761 43 1 -0.2306 -3.1653 5.7226 44 1 0.3871 -4.4707 7.7442 45 1 4.4401 -6.5040 7.2968 46 1 4.1346 -7.0668 8.8500 47 1 4.0341 -5.5670 5.7614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715390296.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:54 Heat of formation + Delta-G solvation = -37.104522 kcal Electronic energy + Delta-G solvation = -28777.433268 eV Core-core repulsion = 24767.089223 eV Total energy + Delta-G solvation = -4010.344045 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.12985 -39.86564 -38.86690 -37.31405 -35.01442 -34.34638 -33.79928 -32.89467 -31.77707 -31.21110 -29.40277 -27.08309 -25.92366 -25.74403 -23.99040 -22.74387 -21.90895 -21.26557 -20.54619 -19.57039 -18.78054 -18.24164 -17.67541 -17.24162 -16.54581 -15.73653 -15.59422 -15.44128 -15.35559 -14.92628 -14.78910 -14.42561 -14.12072 -13.90907 -13.83840 -13.55809 -13.36218 -13.11916 -12.95885 -12.75444 -12.47810 -12.26406 -12.09664 -11.82582 -11.36099 -10.97851 -10.86525 -10.82157 -10.80211 -10.57375 -10.36199 -10.35313 -10.28501 -10.19431 -10.09561 -9.72391 -9.63964 -9.60887 -8.96291 -8.83297 -7.27993 -5.80568 -3.16276 -0.06583 0.83123 2.15452 2.85674 2.95070 3.08228 3.34548 3.39026 3.42608 3.62506 3.78068 4.29944 4.35180 4.52826 4.56096 4.60198 4.82947 4.86963 4.97389 5.04903 5.25829 5.26759 5.37342 5.48958 5.55687 5.60172 5.65106 5.68938 5.75643 5.82854 5.87087 5.98386 6.05434 6.06699 6.11145 6.25947 6.28829 6.31349 6.42401 6.49359 6.58938 6.75600 6.80052 7.25840 7.66948 7.74039 7.94667 8.20891 8.38144 9.16885 9.89422 10.08601 11.37645 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008128 B = 0.004007 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3444.007783 B = 6986.371328 C = 9594.643878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.144 4.144 4 C -0.119 4.119 5 C 0.128 3.872 6 H 0.094 0.906 7 C 0.149 3.851 8 N -0.754 5.754 9 C -0.244 4.244 10 H 0.091 0.909 11 C 0.009 3.991 12 N -0.932 5.932 13 Si 0.880 3.120 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.278 1.278 17 N -0.690 5.690 18 C 0.565 3.435 19 O -0.532 6.532 20 C 0.111 3.889 21 C -0.121 4.121 22 C -0.020 4.020 23 C -0.180 4.180 24 C 0.571 3.429 25 N -0.847 5.847 26 O -0.536 6.536 27 C 0.136 3.864 28 N -0.454 5.454 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.033 0.967 40 H 0.362 0.638 41 H 0.259 0.741 42 H 0.415 0.585 43 H 0.158 0.842 44 H 0.155 0.845 45 H 0.404 0.596 46 H 0.408 0.592 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.566 10.279 16.816 19.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.202 4.202 4 C -0.158 4.158 5 C 0.024 3.976 6 H 0.112 0.888 7 C 0.021 3.979 8 N -0.400 5.400 9 C -0.374 4.374 10 H 0.109 0.891 11 C -0.187 4.187 12 N -0.580 5.580 13 Si 0.710 3.290 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.204 1.204 17 N -0.340 5.340 18 C 0.349 3.651 19 O -0.409 6.409 20 C -0.027 4.027 21 C -0.141 4.141 22 C -0.046 4.046 23 C -0.185 4.185 24 C 0.356 3.644 25 N -0.411 5.411 26 O -0.413 6.413 27 C -0.025 4.025 28 N -0.165 5.165 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.195 0.805 41 H 0.069 0.931 42 H 0.252 0.748 43 H 0.176 0.824 44 H 0.173 0.827 45 H 0.234 0.766 46 H 0.240 0.760 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.894 10.761 16.315 19.565 hybrid contribution -0.362 -1.324 1.559 2.077 sum 0.532 9.437 17.874 20.219 Atomic orbital electron populations 1.21882 0.95178 1.02294 1.01210 1.21150 0.96098 0.95931 0.98497 1.21820 1.00808 0.96117 1.01409 1.21955 1.01153 0.94202 0.98474 1.21545 1.01343 0.91437 0.83254 0.88847 1.21012 0.97296 0.85218 0.94346 1.42695 1.61496 1.02719 1.33116 1.19037 1.24944 0.89242 1.04149 0.89072 1.24626 1.00109 0.96045 0.97952 1.69694 1.48707 1.04938 1.34677 0.86617 0.81093 0.78720 0.82526 1.21136 1.21735 1.20373 1.45917 1.20037 1.55475 1.12605 1.17860 0.84134 0.80586 0.82537 1.90772 1.24299 1.44402 1.81419 1.21566 0.90912 0.95323 0.94917 1.22178 1.01258 0.98602 0.92105 1.21763 0.94171 0.90775 0.97937 1.21109 0.98069 1.02844 0.96493 1.18029 0.81303 0.78590 0.86464 1.43730 1.21198 1.53770 1.22427 1.90831 1.52913 1.62588 1.34934 1.22958 0.98537 0.93849 0.87150 1.67617 1.16049 1.06189 1.26615 0.92979 0.92116 0.92920 0.90170 0.92791 0.92808 0.93041 0.91540 0.91577 0.93572 0.94913 0.80501 0.93050 0.74826 0.82428 0.82696 0.76649 0.76006 0.81711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.05 37.15 0.34 -1.44 16 2 C -0.10 -1.15 2.78 -90.62 -0.25 -1.40 16 3 C -0.14 -1.44 9.19 37.16 0.34 -1.09 16 4 C -0.12 -1.52 4.47 -26.73 -0.12 -1.63 16 5 C 0.13 1.99 2.08 -67.93 -0.14 1.85 16 6 H 0.09 1.59 5.77 -51.93 -0.30 1.29 16 7 C 0.15 2.70 5.45 -4.04 -0.02 2.68 16 8 N -0.75 -17.40 5.24 -59.91 -0.31 -17.71 16 9 C -0.24 -6.74 10.47 -15.06 -0.16 -6.90 16 10 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 11 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 12 N -0.93 -28.93 13.97 55.49 0.78 -28.16 16 13 Si 0.88 22.29 27.74 -169.99 -4.71 17.57 16 14 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 16 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 17 N -0.69 -10.70 4.47 -54.60 -0.24 -10.95 16 18 C 0.57 8.90 7.80 -12.10 -0.09 8.81 16 19 O -0.53 -9.27 15.98 5.38 0.09 -9.19 16 20 C 0.11 1.53 6.75 -82.93 -0.56 0.97 16 21 C -0.12 -1.40 9.62 -39.11 -0.38 -1.78 16 22 C -0.02 -0.21 9.71 -38.89 -0.38 -0.59 16 23 C -0.18 -1.80 5.90 -104.72 -0.62 -2.42 16 24 C 0.57 5.59 8.06 -12.26 -0.10 5.49 16 25 N -0.85 -4.81 8.83 30.56 0.27 -4.54 16 26 O -0.54 -7.14 17.25 5.34 0.09 -7.05 16 27 C 0.14 1.36 10.71 -17.17 -0.18 1.17 16 28 N -0.45 -5.90 9.53 -9.48 -0.09 -5.99 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.82 6.36 -51.93 -0.33 0.48 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.00 6.37 -51.93 -0.33 0.67 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.84 6.66 -51.93 -0.35 0.49 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.36 8.46 5.20 -40.82 -0.21 8.25 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 42 H 0.41 6.37 7.97 -40.82 -0.33 6.04 16 43 H 0.16 1.67 7.63 -52.48 -0.40 1.27 16 44 H 0.16 1.39 7.73 -52.49 -0.41 0.98 16 45 H 0.40 1.30 6.89 -40.82 -0.28 1.02 16 46 H 0.41 1.77 8.93 -40.82 -0.36 1.40 16 47 H 0.17 1.01 6.41 -52.49 -0.34 0.67 16 LS Contribution 388.68 15.07 5.86 5.86 Total: -1.00 -35.48 388.68 -7.31 -42.78 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -6.61 Total: 13.50 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -2.42 Total: 3.86 kcal Atomic # 7 Polarization: -67.73 SS G_CDS: 0.40 Total: -67.34 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.18 Total: -16.24 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.48 -7.31 -42.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715390296.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.679 kcal (2) G-P(sol) polarization free energy of solvation -35.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds