Wall clock time and date at job start Tue Mar 31 2020 17:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47043 * 2 1 4 4 C 1.52998 * 109.47041 * 119.99583 * 2 1 3 5 5 C 1.52997 * 109.47119 * 66.13511 * 4 2 1 6 6 H 1.08997 * 109.47166 * 304.06909 * 5 4 2 7 7 C 1.52998 * 109.47471 * 64.06965 * 5 4 2 8 8 N 1.46499 * 109.47120 * 175.00152 * 7 5 4 9 9 C 1.36943 * 119.99649 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00154 * 0.02562 * 9 8 7 11 11 C 1.38810 * 119.99823 * 179.97438 * 9 8 7 12 12 N 1.31621 * 120.00286 * 180.02562 * 11 9 8 13 13 Si 1.86808 * 120.00075 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47171 * 89.99844 * 13 11 9 15 15 H 1.48501 * 109.47146 * 210.00253 * 13 11 9 16 16 H 1.48503 * 109.47027 * 329.99864 * 13 11 9 17 17 N 1.46505 * 109.47273 * 184.06981 * 5 4 2 18 18 C 1.34784 * 119.99580 * 88.09440 * 17 5 4 19 19 O 1.21483 * 120.00189 * 354.78921 * 18 17 5 20 20 C 1.48331 * 119.99371 * 174.79178 * 18 17 5 21 21 C 1.39308 * 119.56946 * 179.97438 * 20 18 17 22 22 C 1.38446 * 119.19057 * 179.97438 * 21 20 18 23 23 C 1.39874 * 118.35913 * 0.26033 * 22 21 20 24 24 C 1.48006 * 120.46209 * 179.74775 * 23 22 21 25 25 N 1.34773 * 119.99838 * 179.97438 * 24 23 22 26 26 O 1.21528 * 120.00135 * 359.97438 * 24 23 22 27 27 C 1.39728 * 119.07234 * 359.47118 * 23 22 21 28 28 N 1.31412 * 120.71706 * 0.53984 * 27 23 22 29 29 H 1.09001 * 109.47682 * 63.69160 * 1 2 3 30 30 H 1.09004 * 109.47187 * 183.68825 * 1 2 3 31 31 H 1.09002 * 109.47334 * 303.69036 * 1 2 3 32 32 H 1.09004 * 109.47182 * 239.99965 * 2 1 3 33 33 H 1.09000 * 109.47291 * 179.97438 * 3 2 1 34 34 H 1.09008 * 109.47135 * 299.99902 * 3 2 1 35 35 H 1.08996 * 109.47624 * 59.99524 * 3 2 1 36 36 H 1.08995 * 109.47595 * 306.12954 * 4 2 1 37 37 H 1.09006 * 109.47346 * 186.13263 * 4 2 1 38 38 H 1.09000 * 109.47135 * 295.00490 * 7 5 4 39 39 H 1.09000 * 109.47140 * 54.99871 * 7 5 4 40 40 H 0.96997 * 120.00450 * 0.02562 * 8 7 5 41 41 H 0.96996 * 119.99829 * 179.97438 * 12 11 9 42 42 H 0.96998 * 120.00288 * 268.09939 * 17 5 4 43 43 H 1.08003 * 120.40340 * 0.02582 * 21 20 18 44 44 H 1.08000 * 120.82224 * 179.97438 * 22 21 20 45 45 H 0.96997 * 120.00140 * 0.02562 * 25 24 23 46 46 H 0.97002 * 120.00397 * 179.97438 * 25 24 23 47 47 H 1.07999 * 119.64061 * 180.24847 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6597 -2.2012 1.1747 6 1 0.5813 -2.2933 1.0454 7 6 2.3730 -2.8519 -0.0122 8 7 2.1042 -4.2921 -0.0136 9 6 2.6416 -5.0878 -0.9900 10 1 3.2638 -4.6538 -1.7587 11 6 2.3874 -6.4524 -0.9911 12 7 2.9043 -7.2174 -1.9293 13 14 1.3118 -7.2033 0.3388 14 1 -0.1053 -7.1907 -0.1049 15 1 1.7395 -8.6030 0.5899 16 1 1.4461 -6.4130 1.5889 17 7 2.0619 -2.8719 2.4136 18 6 1.2210 -2.9033 3.4664 19 8 0.1699 -2.2959 3.4226 20 6 1.5793 -3.6794 4.6786 21 6 0.7038 -3.7054 5.7620 22 6 1.0458 -4.4328 6.8892 23 6 2.2683 -5.1124 6.8958 24 6 2.6829 -5.8995 8.0786 25 7 3.8626 -6.5511 8.0747 26 8 1.9595 -5.9583 9.0534 27 6 3.0900 -5.0425 5.7678 28 7 2.7292 -4.3409 4.7169 29 1 -0.3634 0.4555 -0.9212 30 1 -0.3634 -1.0256 0.0661 31 1 -0.3634 0.5701 0.8551 32 1 1.8933 -0.5139 -0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.5898 -0.2746 2.1358 37 1 3.1244 -0.6271 1.3059 38 1 2.0076 -2.4132 -0.9407 39 1 3.4465 -2.6827 0.0718 40 1 1.5451 -4.6819 0.6765 41 1 2.7269 -8.1710 -1.9298 42 1 2.9334 -3.2932 2.4761 43 1 -0.2306 -3.1653 5.7226 44 1 0.3871 -4.4707 7.7442 45 1 4.4401 -6.5040 7.2968 46 1 4.1346 -7.0668 8.8500 47 1 4.0341 -5.5670 5.7614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715390296.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:53 Heat of formation + Delta-G solvation = -64.838598 kcal Electronic energy + Delta-G solvation = -28778.635907 eV Core-core repulsion = 24767.089223 eV Total energy + Delta-G solvation = -4011.546685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.04443 -40.90665 -39.80053 -38.51606 -36.46013 -35.28088 -35.04595 -33.89218 -33.23991 -32.53568 -30.71080 -27.98439 -27.37566 -26.79553 -24.82259 -24.25537 -23.32923 -22.25954 -21.60483 -20.70137 -19.94921 -19.37772 -18.92657 -18.30788 -17.49565 -16.95230 -16.74558 -16.41444 -16.30119 -16.14992 -15.94149 -15.74486 -15.38577 -15.06295 -14.96178 -14.70646 -14.40611 -14.37211 -14.28915 -14.00121 -13.75034 -13.70341 -13.24617 -13.00506 -12.88946 -12.62832 -12.25163 -12.05371 -11.92204 -11.83099 -11.66886 -11.58382 -11.43018 -11.29671 -11.21244 -11.00408 -10.83467 -10.69114 -10.49437 -10.06088 -9.31022 -8.03810 -5.36161 -0.96250 0.00907 1.22115 1.32508 1.34953 1.41033 1.88110 1.96907 2.31245 2.44274 2.69996 2.89211 3.28784 3.48054 3.52169 3.57521 3.69773 3.83720 3.86486 3.92790 4.03281 4.10331 4.16592 4.34361 4.49402 4.54762 4.74612 4.76386 4.78019 4.83623 4.90643 4.94834 4.99089 5.06227 5.11577 5.14933 5.23385 5.36802 5.43972 5.50784 5.57143 5.76033 5.76303 6.19839 6.24002 6.27816 6.57340 7.01431 7.05975 7.13452 7.81601 7.99404 9.17595 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008128 B = 0.004007 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3444.007783 B = 6986.371328 C = 9594.643878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.140 4.140 4 C -0.108 4.108 5 C 0.138 3.862 6 H 0.078 0.922 7 C 0.149 3.851 8 N -0.756 5.756 9 C -0.227 4.227 10 H 0.066 0.934 11 C -0.053 4.053 12 N -0.979 5.979 13 Si 0.943 3.057 14 H -0.288 1.288 15 H -0.292 1.292 16 H -0.260 1.260 17 N -0.692 5.692 18 C 0.563 3.437 19 O -0.556 6.556 20 C 0.087 3.913 21 C -0.119 4.119 22 C -0.019 4.019 23 C -0.174 4.174 24 C 0.572 3.428 25 N -0.823 5.823 26 O -0.576 6.576 27 C 0.139 3.861 28 N -0.473 5.473 29 H 0.062 0.938 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.042 0.958 40 H 0.362 0.638 41 H 0.257 0.743 42 H 0.416 0.584 43 H 0.162 0.838 44 H 0.168 0.832 45 H 0.418 0.582 46 H 0.418 0.582 47 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.148 10.819 18.672 21.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.197 4.197 4 C -0.147 4.147 5 C 0.033 3.967 6 H 0.096 0.904 7 C 0.023 3.977 8 N -0.402 5.402 9 C -0.358 4.358 10 H 0.084 0.916 11 C -0.245 4.245 12 N -0.630 5.630 13 Si 0.772 3.228 14 H -0.214 1.214 15 H -0.219 1.219 16 H -0.186 1.186 17 N -0.341 5.341 18 C 0.348 3.652 19 O -0.435 6.435 20 C -0.050 4.050 21 C -0.139 4.139 22 C -0.046 4.046 23 C -0.180 4.180 24 C 0.357 3.643 25 N -0.388 5.388 26 O -0.456 6.456 27 C -0.022 4.022 28 N -0.184 5.184 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.195 0.805 41 H 0.067 0.933 42 H 0.253 0.747 43 H 0.180 0.820 44 H 0.185 0.815 45 H 0.251 0.749 46 H 0.251 0.749 47 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.520 11.338 18.176 21.477 hybrid contribution -0.462 -1.449 0.982 1.810 sum 1.058 9.889 19.159 21.586 Atomic orbital electron populations 1.21866 0.95451 1.01188 1.01924 1.21156 0.95875 0.97117 0.97525 1.21777 1.01216 0.94618 1.02095 1.21871 1.01842 0.92061 0.98893 1.21388 0.99988 0.92888 0.82389 0.90405 1.21162 0.98077 0.82631 0.95870 1.42702 1.61116 1.04383 1.31987 1.19044 1.23238 0.89626 1.03853 0.91615 1.25300 1.02175 0.96709 1.00345 1.69847 1.51008 1.05105 1.37000 0.85591 0.78862 0.77808 0.80555 1.21444 1.21860 1.18559 1.45915 1.20099 1.55591 1.12540 1.18182 0.83649 0.80330 0.83063 1.90748 1.25183 1.45506 1.82038 1.21354 0.92212 0.96685 0.94735 1.22223 1.01130 0.98684 0.91904 1.21946 0.94642 0.90221 0.97766 1.21252 0.97829 1.02201 0.96669 1.17989 0.81967 0.78688 0.85690 1.43576 1.19822 1.52107 1.23322 1.90824 1.54391 1.64207 1.36165 1.23530 0.99615 0.92976 0.86079 1.67589 1.15902 1.06942 1.27972 0.91879 0.94046 0.92660 0.90897 0.92119 0.91939 0.92580 0.91779 0.90398 0.93219 0.93987 0.80519 0.93350 0.74702 0.82010 0.81494 0.74928 0.74852 0.77992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.05 71.98 0.65 -2.75 16 2 C -0.10 -2.17 2.78 -10.80 -0.03 -2.20 16 3 C -0.14 -2.48 9.19 71.98 0.66 -1.82 16 4 C -0.11 -2.61 4.47 30.59 0.14 -2.48 16 5 C 0.14 4.18 2.08 44.99 0.09 4.27 16 6 H 0.08 2.65 5.77 -2.39 -0.01 2.64 16 7 C 0.15 5.29 5.45 86.38 0.47 5.77 16 8 N -0.76 -34.44 5.24 -343.45 -1.80 -36.24 16 9 C -0.23 -12.58 10.47 84.03 0.88 -11.70 16 10 H 0.07 3.94 8.06 -2.91 -0.02 3.91 16 11 C -0.05 -3.10 5.50 84.86 0.47 -2.64 16 12 N -0.98 -61.73 13.97 21.65 0.30 -61.43 16 13 Si 0.94 46.10 27.74 68.60 1.90 48.00 16 14 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 15 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 16 H -0.26 -11.83 6.52 99.48 0.65 -11.18 16 17 N -0.69 -20.88 4.47 -444.95 -1.99 -22.87 16 18 C 0.56 17.42 7.80 86.93 0.68 18.10 16 19 O -0.56 -19.32 15.98 -3.66 -0.06 -19.38 16 20 C 0.09 2.32 6.75 41.96 0.28 2.60 16 21 C -0.12 -2.64 9.62 22.58 0.22 -2.42 16 22 C -0.02 -0.37 9.71 22.72 0.22 -0.15 16 23 C -0.17 -3.09 5.90 -19.93 -0.12 -3.21 16 24 C 0.57 9.83 8.06 86.83 0.70 10.53 16 25 N -0.82 -6.75 8.83 -175.50 -1.55 -8.30 16 26 O -0.58 -14.45 17.25 -3.80 -0.07 -14.51 16 27 C 0.14 2.39 10.71 85.12 0.91 3.30 16 28 N -0.47 -11.42 9.53 -183.91 -1.75 -13.17 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.04 1.11 6.36 -2.38 -0.02 1.09 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.73 6.37 -2.39 -0.02 1.71 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.05 1.77 6.66 -2.39 -0.02 1.76 16 39 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.36 16.53 5.20 -92.71 -0.48 16.05 16 41 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 42 H 0.42 12.32 7.97 -92.71 -0.74 11.58 16 43 H 0.16 3.35 7.63 -2.91 -0.02 3.33 16 44 H 0.17 2.76 7.73 -2.91 -0.02 2.73 16 45 H 0.42 1.07 6.89 -92.71 -0.64 0.44 16 46 H 0.42 2.36 8.93 -92.71 -0.83 1.53 16 47 H 0.20 1.67 6.41 -2.91 -0.02 1.65 16 Total: -1.00 -77.04 388.68 -0.48 -77.53 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: -1.70 Total: 35.17 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 6.22 Total: 15.19 kcal Atomic # 7 Polarization: -135.21 SS G_CDS: -6.79 Total: -142.00 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -0.12 Total: -33.89 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.90 Total: 48.00 kcal Total: -77.04 -0.48 -77.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715390296.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.688 kcal (2) G-P(sol) polarization free energy of solvation -77.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds