Wall clock time and date at job start Tue Mar 31 2020 18:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.08995 * 109.47098 * 299.99700 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34775 * 119.99947 * 180.02562 * 7 6 4 9 9 O 1.21280 * 119.99839 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00028 * 179.97438 * 8 7 6 11 11 C 1.50696 * 109.47012 * 179.97438 * 10 8 7 12 12 C 1.38631 * 120.32387 * 90.00391 * 11 10 8 13 13 C 1.38587 * 118.48778 * 179.97438 * 12 11 10 14 14 C 1.39307 * 119.06115 * 0.02562 * 13 12 11 15 15 C 1.48169 * 119.72375 * 179.97438 * 14 13 12 16 16 N 1.34777 * 120.00137 * 179.97438 * 15 14 13 17 17 O 1.21515 * 120.00169 * 359.97438 * 15 14 13 18 18 N 1.32724 * 120.55696 * 359.97438 * 14 13 12 19 19 C 1.31528 * 121.63617 * 359.71042 * 18 14 13 20 20 N 1.46498 * 109.47257 * 179.97438 * 4 2 1 21 21 C 1.36943 * 119.99752 * 84.72207 * 20 4 2 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 4 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 4 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47159 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47290 * 120.00044 * 25 23 21 28 28 H 1.48503 * 109.47163 * 240.00049 * 25 23 21 29 29 H 1.09003 * 109.47062 * 300.00363 * 1 2 3 30 30 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 31 31 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 33 33 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 35 35 H 1.08995 * 109.47275 * 60.00121 * 3 2 1 36 36 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 37 37 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 38 38 H 0.96997 * 120.00059 * 359.97438 * 7 6 4 39 39 H 1.08992 * 109.47087 * 299.99808 * 10 8 7 40 40 H 1.08999 * 109.46766 * 59.99867 * 10 8 7 41 41 H 1.07997 * 120.75467 * 359.97438 * 12 11 10 42 42 H 1.07999 * 120.46719 * 179.97438 * 13 12 11 43 43 H 0.97008 * 119.99756 * 359.97438 * 16 15 14 44 44 H 0.96998 * 119.99981 * 180.02562 * 16 15 14 45 45 H 1.08000 * 119.54886 * 180.31029 * 19 18 14 46 46 H 0.97001 * 120.00384 * 265.00562 * 20 4 2 47 47 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5299 -2.1638 1.2492 7 7 2.1140 -2.8883 2.3807 8 6 1.8059 -4.1848 2.5821 9 8 1.0447 -4.7515 1.8270 10 6 2.4072 -4.9302 3.7457 11 6 1.9047 -6.3509 3.7457 12 6 2.5952 -7.3376 3.0590 13 6 2.0994 -8.6314 3.0850 14 6 0.9305 -8.8940 3.7959 15 6 0.3870 -10.2719 3.8330 16 7 -0.7432 -10.5323 4.5195 17 8 0.9603 -11.1672 3.2445 18 7 0.2994 -7.9202 4.4402 19 6 0.7514 -6.6850 4.4371 20 7 3.5050 -0.7218 1.2490 21 6 4.1901 0.3552 1.7447 22 1 3.6505 1.2032 2.1400 23 6 5.5782 0.3572 1.7392 24 7 6.2359 -0.6760 1.2570 25 14 6.5129 1.8261 2.4161 26 1 5.5484 2.8484 2.8953 27 1 7.3718 1.3886 3.5458 28 1 7.3616 2.4088 1.3458 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8899 36 1 0.4436 -2.1650 1.3388 37 1 1.8183 -2.6511 0.3179 38 1 2.7231 -2.4351 2.9844 39 1 3.4934 -4.9286 3.6559 40 1 2.1189 -4.4431 4.6772 41 1 3.4990 -7.1032 2.5162 42 1 2.6115 -9.4248 2.5608 43 1 -1.2007 -9.8176 4.9896 44 1 -1.0988 -11.4344 4.5441 45 1 0.2136 -5.9198 4.9771 46 1 3.9897 -1.4834 0.8939 47 1 7.2058 -0.6748 1.2535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715596537.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:54 Heat of formation + Delta-G solvation = -44.588943 kcal Electronic energy + Delta-G solvation = -28045.178893 eV Core-core repulsion = 24034.510300 eV Total energy + Delta-G solvation = -4010.668594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.89882 -39.59633 -38.80021 -37.29854 -34.30427 -33.91466 -33.37712 -33.18337 -32.16831 -30.51148 -29.08824 -27.55153 -26.13445 -24.40653 -23.85893 -23.33820 -21.87563 -21.09996 -20.21909 -19.30401 -18.46729 -17.48326 -17.46931 -16.69608 -16.42041 -16.09302 -15.38475 -15.25263 -15.20479 -15.02944 -14.69948 -14.08632 -13.95611 -13.86403 -13.57858 -13.39907 -13.34045 -13.32712 -12.87358 -12.51853 -12.12837 -12.08097 -11.85379 -11.67521 -11.10990 -11.02036 -10.88763 -10.69942 -10.66537 -10.34826 -10.14244 -10.11237 -10.01581 -9.98172 -9.82936 -9.73080 -9.60591 -9.17729 -8.98782 -8.70409 -7.10333 -5.89388 -3.18638 0.41612 1.04480 2.48735 2.81286 3.13473 3.33574 3.40566 3.42581 3.42751 3.76212 3.98154 4.42382 4.47414 4.59367 4.71192 4.76477 4.95557 5.09398 5.27638 5.30751 5.34170 5.42430 5.47664 5.53335 5.58174 5.69761 5.78715 5.84552 5.94466 5.99097 6.13041 6.18947 6.32551 6.33856 6.39618 6.46901 6.48216 6.57306 6.61874 6.85061 6.99652 7.01585 7.24330 7.51458 7.60504 7.82530 7.96414 8.27973 8.45606 9.40251 9.94518 10.30420 11.32377 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015908 B = 0.002304 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.650392 B =12149.369427 C =13327.702626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.139 4.139 4 C 0.170 3.830 5 H 0.054 0.946 6 C 0.114 3.886 7 N -0.710 5.710 8 C 0.512 3.488 9 O -0.549 6.549 10 C -0.107 4.107 11 C -0.080 4.080 12 C -0.068 4.068 13 C -0.105 4.105 14 C 0.062 3.938 15 C 0.581 3.419 16 N -0.837 5.837 17 O -0.539 6.539 18 N -0.458 5.458 19 C 0.111 3.889 20 N -0.721 5.721 21 C -0.236 4.236 22 H 0.074 0.926 23 C -0.011 4.011 24 N -0.929 5.929 25 Si 0.902 3.098 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.031 0.969 35 H 0.040 0.960 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.411 0.589 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.144 0.856 42 H 0.148 0.852 43 H 0.412 0.588 44 H 0.404 0.596 45 H 0.162 0.838 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.943 -10.662 7.470 17.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.197 4.197 4 C 0.059 3.941 5 H 0.072 0.928 6 C -0.010 4.010 7 N -0.361 5.361 8 C 0.297 3.703 9 O -0.427 6.427 10 C -0.147 4.147 11 C -0.082 4.082 12 C -0.094 4.094 13 C -0.126 4.126 14 C -0.076 4.076 15 C 0.365 3.635 16 N -0.400 5.400 17 O -0.416 6.416 18 N -0.169 5.169 19 C -0.049 4.049 20 N -0.363 5.363 21 C -0.367 4.367 22 H 0.092 0.908 23 C -0.207 4.207 24 N -0.577 5.577 25 Si 0.733 3.267 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.248 0.752 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.162 0.838 42 H 0.166 0.834 43 H 0.242 0.758 44 H 0.234 0.766 45 H 0.179 0.821 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.694 -11.585 7.036 18.571 hybrid contribution 1.464 1.184 0.143 1.888 sum -11.230 -10.401 7.179 16.907 Atomic orbital electron populations 1.21942 0.96859 1.00940 1.00956 1.21733 0.93545 0.97819 1.00062 1.21822 1.04210 0.94617 0.99022 1.20549 0.86384 0.91110 0.96017 0.92837 1.21740 0.97260 0.93207 0.88824 1.45978 1.48462 1.10724 1.30976 1.20273 0.81715 0.82233 0.86065 1.90711 1.36577 1.67880 1.47540 1.20694 1.03186 0.91461 0.99363 1.20600 0.95808 0.95399 0.96429 1.21554 0.99900 0.91836 0.96114 1.22074 0.95383 0.97819 0.97294 1.20949 0.94703 0.93279 0.98682 1.17894 0.80593 0.86853 0.78198 1.43632 1.27309 1.14891 1.54159 1.90827 1.59826 1.46005 1.44896 1.67472 1.31186 1.00851 1.17439 1.22577 0.92892 0.92744 0.96725 1.42478 0.98727 1.21076 1.74003 1.19237 0.88746 0.96305 1.32433 0.90849 1.24733 0.96499 0.97714 1.01793 1.69667 1.06894 1.29778 1.51348 0.86201 0.80060 0.82184 0.78232 1.20546 1.21929 1.21932 0.93188 0.93553 0.93071 0.91918 0.89490 0.94984 0.94057 0.91593 0.91937 0.75231 0.86955 0.87255 0.83805 0.83427 0.75781 0.76559 0.82107 0.78122 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.84 37.16 0.33 -1.67 16 2 C -0.11 -1.78 2.69 -90.62 -0.24 -2.03 16 3 C -0.14 -2.40 8.26 37.16 0.31 -2.10 16 4 C 0.17 2.91 2.18 -67.93 -0.15 2.76 16 5 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 6 C 0.11 1.78 4.73 -4.04 -0.02 1.76 16 7 N -0.71 -10.29 5.39 -60.29 -0.32 -10.61 16 8 C 0.51 7.21 7.82 -10.99 -0.09 7.12 16 9 O -0.55 -9.68 16.03 5.56 0.09 -9.59 16 10 C -0.11 -1.07 5.85 -29.04 -0.17 -1.24 16 11 C -0.08 -0.87 4.40 -104.36 -0.46 -1.33 16 12 C -0.07 -0.76 9.85 -39.31 -0.39 -1.14 16 13 C -0.10 -1.22 9.63 -39.06 -0.38 -1.59 16 14 C 0.06 0.74 6.75 -83.01 -0.56 0.18 16 15 C 0.58 6.83 8.08 -12.18 -0.10 6.73 16 16 N -0.84 -6.55 8.86 30.60 0.27 -6.28 16 17 O -0.54 -7.92 17.16 5.35 0.09 -7.82 16 18 N -0.46 -5.19 9.54 -9.80 -0.09 -5.28 16 19 C 0.11 1.18 10.86 -17.56 -0.19 0.99 16 20 N -0.72 -15.35 4.44 -53.43 -0.24 -15.59 16 21 C -0.24 -5.67 7.55 -15.06 -0.11 -5.78 16 22 H 0.07 1.74 7.38 -52.49 -0.39 1.35 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 24 N -0.93 -25.62 13.06 55.49 0.72 -24.89 16 25 Si 0.90 20.72 29.55 -169.99 -5.02 15.69 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.65 6.54 -51.93 -0.34 0.31 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.79 5.99 -51.93 -0.31 1.48 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.98 6.71 -51.93 -0.35 0.63 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.41 5.92 8.14 -40.82 -0.33 5.59 16 39 H 0.11 1.01 8.09 -51.93 -0.42 0.59 16 40 H 0.11 0.81 8.09 -51.93 -0.42 0.39 16 41 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 42 H 0.15 1.59 7.64 -52.49 -0.40 1.19 16 43 H 0.41 2.66 8.16 -40.82 -0.33 2.32 16 44 H 0.40 2.34 8.93 -40.82 -0.36 1.97 16 45 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 46 H 0.38 9.04 7.80 -40.82 -0.32 8.72 16 47 H 0.25 6.92 8.31 -40.82 -0.34 6.59 16 LS Contribution 393.20 15.07 5.93 5.93 Total: -1.00 -31.64 393.20 -7.80 -39.45 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -6.91 Total: 16.73 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -2.31 Total: 2.28 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: 0.34 Total: -62.66 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.18 Total: -17.42 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.64 -7.80 -39.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715596537.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.144 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds