Wall clock time and date at job start Tue Mar 31 2020 18:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47121 * 2 1 4 4 C 1.53006 * 109.46846 * 119.99642 * 2 1 3 5 5 H 1.08991 * 109.47210 * 300.00501 * 4 2 1 6 6 C 1.53000 * 109.46846 * 179.97438 * 4 2 1 7 7 N 1.46499 * 109.46840 * 185.00008 * 6 4 2 8 8 C 1.34779 * 119.99872 * 180.02562 * 7 6 4 9 9 O 1.21278 * 120.00071 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99944 * 180.02562 * 8 7 6 11 11 C 1.50701 * 109.47064 * 180.02562 * 10 8 7 12 12 C 1.38624 * 120.32231 * 89.99918 * 11 10 8 13 13 C 1.38599 * 118.48605 * 180.02562 * 12 11 10 14 14 C 1.39306 * 119.05431 * 359.97438 * 13 12 11 15 15 C 1.48169 * 119.71995 * 179.97438 * 14 13 12 16 16 N 1.34780 * 120.00464 * 180.02562 * 15 14 13 17 17 O 1.21522 * 119.99889 * 359.97438 * 15 14 13 18 18 N 1.32715 * 120.56081 * 0.02562 * 14 13 12 19 19 C 1.31524 * 121.63816 * 359.69393 * 18 14 13 20 20 N 1.46504 * 109.46878 * 60.00402 * 4 2 1 21 21 C 1.36929 * 119.99940 * 274.99762 * 20 4 2 22 22 H 1.08007 * 120.00260 * 359.97438 * 21 20 4 23 23 C 1.38808 * 120.00410 * 180.02562 * 21 20 4 24 24 N 1.31625 * 119.99828 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00548 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46871 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47349 * 119.99885 * 25 23 21 28 28 H 1.48505 * 109.47162 * 240.00080 * 25 23 21 29 29 H 1.09001 * 109.47624 * 300.00074 * 1 2 3 30 30 H 1.09002 * 109.46642 * 60.00262 * 1 2 3 31 31 H 1.09002 * 109.47069 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47624 * 239.99926 * 2 1 3 33 33 H 1.09001 * 109.47336 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47375 * 299.99881 * 3 2 1 35 35 H 1.09001 * 109.47456 * 59.99524 * 3 2 1 36 36 H 1.09002 * 109.47398 * 305.00335 * 6 4 2 37 37 H 1.09001 * 109.47194 * 65.00515 * 6 4 2 38 38 H 0.97000 * 120.00420 * 0.02562 * 7 6 4 39 39 H 1.09002 * 109.47152 * 300.00160 * 10 8 7 40 40 H 1.09001 * 109.46980 * 60.00059 * 10 8 7 41 41 H 1.07992 * 120.75792 * 359.97438 * 12 11 10 42 42 H 1.07994 * 120.47189 * 179.97438 * 13 12 11 43 43 H 0.97002 * 119.99249 * 0.02562 * 16 15 14 44 44 H 0.96996 * 120.00044 * 179.97438 * 16 15 14 45 45 H 1.08003 * 119.54471 * 180.31086 * 19 18 14 46 46 H 0.96996 * 120.00090 * 94.99890 * 20 4 2 47 47 H 0.96994 * 120.00251 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6766 -0.2074 2.1392 6 6 3.5700 -0.7218 1.2490 7 7 4.0582 -1.5140 2.3805 8 6 5.3833 -1.6552 2.5824 9 8 6.1714 -1.1270 1.8270 10 6 5.8855 -2.4706 3.7460 11 6 7.3925 -2.4701 3.7465 12 6 8.0918 -1.4900 4.4336 13 6 9.4771 -1.5255 4.4081 14 6 10.1148 -2.5397 3.6973 15 6 11.5952 -2.5914 3.6597 16 7 12.2182 -3.5698 2.9733 17 8 12.2476 -1.7511 4.2471 18 7 9.4078 -3.4593 3.0526 19 6 8.0926 -3.4523 3.0647 20 7 1.5516 -2.1025 1.2493 21 6 0.3101 -2.3897 1.7504 22 1 -0.3090 -1.5981 2.1461 23 6 -0.1524 -3.6985 1.7509 24 7 0.6022 -4.6633 1.2692 25 14 -1.8464 -4.0903 2.4339 26 1 -2.4894 -2.8394 2.9104 27 1 -2.6806 -4.7013 1.3681 28 1 -1.7155 -5.0416 3.5666 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.9330 -1.1564 0.3176 37 1 3.9337 0.3019 1.3384 38 1 3.4278 -1.9368 2.9845 39 1 5.5220 -2.0367 4.6775 40 1 5.5222 -3.4944 3.6560 41 1 7.5691 -0.7159 4.9756 42 1 10.0538 -0.7776 4.9319 43 1 11.6973 -4.2399 2.5036 44 1 13.1872 -3.6034 2.9484 45 1 7.5510 -4.2202 2.5324 46 1 2.1078 -2.8135 0.8944 47 1 0.2789 -5.5778 1.2692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715596544.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:58 Heat of formation + Delta-G solvation = -44.596932 kcal Electronic energy + Delta-G solvation = -28050.217355 eV Core-core repulsion = 24039.548415 eV Total energy + Delta-G solvation = -4010.668940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.89810 -39.59513 -38.79760 -37.29764 -34.30177 -33.91403 -33.37490 -33.18553 -32.16735 -30.51130 -29.08688 -27.54965 -26.13629 -24.40241 -23.86246 -23.33711 -21.87679 -21.09696 -20.21982 -19.30335 -18.46014 -17.50270 -17.44716 -16.69912 -16.42605 -16.07474 -15.43868 -15.25024 -15.16204 -14.97758 -14.74853 -14.08751 -13.94650 -13.86703 -13.52387 -13.43263 -13.36232 -13.34500 -12.88379 -12.47570 -12.18213 -12.06687 -11.84309 -11.67558 -11.10928 -11.02058 -10.88769 -10.69753 -10.66205 -10.34956 -10.14440 -10.12209 -10.01706 -9.97337 -9.82040 -9.73083 -9.60630 -9.17399 -8.98776 -8.70406 -7.10285 -5.89320 -3.18564 0.41683 1.04055 2.48776 2.81284 3.14183 3.33565 3.40636 3.42621 3.42778 3.76428 3.99577 4.42786 4.47443 4.58497 4.70885 4.75153 4.96478 5.09205 5.25828 5.28611 5.33261 5.45831 5.48613 5.53706 5.58096 5.69887 5.75918 5.84222 5.94475 5.96667 6.12973 6.18868 6.32575 6.34306 6.39604 6.47584 6.48258 6.57261 6.61787 6.85069 7.00753 7.01483 7.24088 7.53244 7.60527 7.82504 7.96938 8.28022 8.45582 9.40357 9.94547 10.30580 11.32436 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015622 B = 0.002315 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.930840 B =12090.433861 C =13262.399273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.170 3.830 5 H 0.054 0.946 6 C 0.114 3.886 7 N -0.710 5.710 8 C 0.512 3.488 9 O -0.549 6.549 10 C -0.107 4.107 11 C -0.080 4.080 12 C -0.070 4.070 13 C -0.107 4.107 14 C 0.062 3.938 15 C 0.581 3.419 16 N -0.836 5.836 17 O -0.541 6.541 18 N -0.457 5.457 19 C 0.113 3.887 20 N -0.721 5.721 21 C -0.236 4.236 22 H 0.073 0.927 23 C -0.011 4.011 24 N -0.929 5.929 25 Si 0.902 3.098 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.040 0.960 30 H 0.031 0.969 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.411 0.589 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.142 0.858 42 H 0.147 0.853 43 H 0.413 0.587 44 H 0.404 0.596 45 H 0.164 0.836 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.019 4.163 4.946 15.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.059 3.941 5 H 0.071 0.929 6 C -0.010 4.010 7 N -0.361 5.361 8 C 0.297 3.703 9 O -0.427 6.427 10 C -0.147 4.147 11 C -0.082 4.082 12 C -0.096 4.096 13 C -0.127 4.127 14 C -0.076 4.076 15 C 0.365 3.635 16 N -0.399 5.399 17 O -0.417 6.417 18 N -0.168 5.168 19 C -0.047 4.047 20 N -0.363 5.363 21 C -0.367 4.367 22 H 0.091 0.909 23 C -0.207 4.207 24 N -0.577 5.577 25 Si 0.733 3.267 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.248 0.752 39 H 0.126 0.874 40 H 0.132 0.868 41 H 0.160 0.840 42 H 0.165 0.835 43 H 0.243 0.757 44 H 0.234 0.766 45 H 0.181 0.819 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.138 4.498 4.465 16.412 hybrid contribution -1.599 -0.440 0.536 1.743 sum 13.539 4.058 5.001 14.993 Atomic orbital electron populations 1.21819 0.94912 1.03895 0.99021 1.21732 0.96938 0.94414 1.00057 1.21942 1.00462 0.97344 1.00956 1.20550 0.89301 0.88197 0.96015 0.92854 1.21741 0.95666 0.94800 0.88832 1.45979 1.06490 1.52713 1.30959 1.20273 0.82729 0.81224 0.86056 1.90710 1.55493 1.48962 1.47541 1.20697 0.91335 1.03335 0.99336 1.20600 0.95861 0.95436 0.96344 1.21490 0.93587 0.97266 0.97262 1.22050 0.94834 0.98100 0.97760 1.20961 0.93802 0.94336 0.98481 1.17897 0.86379 0.81028 0.78216 1.43638 1.11130 1.31089 1.54068 1.90822 1.66277 1.39438 1.45189 1.67490 1.08805 1.23948 1.16569 1.22653 0.89027 0.97447 0.95540 1.42467 1.18113 1.01844 1.73842 1.19234 0.92816 0.92355 1.32317 0.90869 1.24728 0.98288 0.95906 1.01793 1.69664 1.36786 0.99871 1.51360 0.86205 0.84297 0.77943 0.78255 1.20559 1.21930 1.21929 0.94056 0.94988 0.89506 0.91904 0.93073 0.93547 0.93197 0.91903 0.91629 0.75230 0.87390 0.86815 0.84038 0.83502 0.75706 0.76550 0.81870 0.78108 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.26 37.16 0.31 -2.09 16 2 C -0.11 -1.78 2.69 -90.62 -0.24 -2.02 16 3 C -0.15 -2.00 8.84 37.16 0.33 -1.68 16 4 C 0.17 2.91 2.18 -67.92 -0.15 2.76 16 5 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 6 C 0.11 1.78 4.73 -4.04 -0.02 1.76 16 7 N -0.71 -10.29 5.39 -60.29 -0.32 -10.62 16 8 C 0.51 7.21 7.82 -10.98 -0.09 7.12 16 9 O -0.55 -9.68 16.03 5.56 0.09 -9.59 16 10 C -0.11 -1.07 5.85 -29.03 -0.17 -1.24 16 11 C -0.08 -0.87 4.40 -104.36 -0.46 -1.33 16 12 C -0.07 -0.73 9.85 -39.31 -0.39 -1.12 16 13 C -0.11 -1.19 9.63 -39.05 -0.38 -1.57 16 14 C 0.06 0.75 6.75 -83.01 -0.56 0.19 16 15 C 0.58 6.86 8.08 -12.18 -0.10 6.76 16 16 N -0.84 -6.76 8.86 30.61 0.27 -6.49 16 17 O -0.54 -7.87 17.16 5.35 0.09 -7.78 16 18 N -0.46 -5.38 9.54 -9.80 -0.09 -5.48 16 19 C 0.11 1.28 10.86 -17.57 -0.19 1.09 16 20 N -0.72 -15.31 4.44 -53.42 -0.24 -15.54 16 21 C -0.24 -5.66 7.57 -15.06 -0.11 -5.77 16 22 H 0.07 1.73 7.40 -52.48 -0.39 1.35 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 24 N -0.93 -25.51 13.06 55.49 0.72 -24.79 16 25 Si 0.90 20.67 29.55 -169.99 -5.02 15.65 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 1.78 6.01 -51.93 -0.31 1.47 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.05 0.65 6.54 -51.93 -0.34 0.31 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 0.98 6.71 -51.93 -0.35 0.63 16 38 H 0.41 5.93 8.14 -40.82 -0.33 5.59 16 39 H 0.11 0.83 8.09 -51.93 -0.42 0.41 16 40 H 0.11 1.00 8.09 -51.93 -0.42 0.58 16 41 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.15 1.49 7.64 -52.49 -0.40 1.09 16 43 H 0.41 2.84 8.16 -40.82 -0.33 2.51 16 44 H 0.40 2.43 8.93 -40.82 -0.36 2.06 16 45 H 0.16 1.56 8.06 -52.48 -0.42 1.14 16 46 H 0.38 9.00 7.80 -40.82 -0.32 8.68 16 47 H 0.25 6.89 8.31 -40.82 -0.34 6.56 16 LS Contribution 393.24 15.07 5.93 5.93 Total: -1.00 -31.51 393.24 -7.80 -39.31 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -6.91 Total: 16.89 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -2.31 Total: 2.49 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: 0.34 Total: -62.91 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: 0.18 Total: -17.37 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.51 -7.80 -39.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715596544.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.283 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds