Wall clock time and date at job start Tue Mar 31 2020 18:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47121 * 2 1 4 4 C 1.53006 * 109.46846 * 119.99642 * 2 1 3 5 5 H 1.08991 * 109.47210 * 300.00501 * 4 2 1 6 6 C 1.53000 * 109.46846 * 179.97438 * 4 2 1 7 7 N 1.46499 * 109.46840 * 185.00008 * 6 4 2 8 8 C 1.34779 * 119.99872 * 180.02562 * 7 6 4 9 9 O 1.21278 * 120.00071 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99944 * 180.02562 * 8 7 6 11 11 C 1.50701 * 109.47064 * 180.02562 * 10 8 7 12 12 C 1.38624 * 120.32231 * 89.99918 * 11 10 8 13 13 C 1.38599 * 118.48605 * 180.02562 * 12 11 10 14 14 C 1.39306 * 119.05431 * 359.97438 * 13 12 11 15 15 C 1.48169 * 119.71995 * 179.97438 * 14 13 12 16 16 N 1.34780 * 120.00464 * 180.02562 * 15 14 13 17 17 O 1.21522 * 119.99889 * 359.97438 * 15 14 13 18 18 N 1.32715 * 120.56081 * 0.02562 * 14 13 12 19 19 C 1.31524 * 121.63816 * 359.69393 * 18 14 13 20 20 N 1.46504 * 109.46878 * 60.00402 * 4 2 1 21 21 C 1.36929 * 119.99940 * 274.99762 * 20 4 2 22 22 H 1.08007 * 120.00260 * 359.97438 * 21 20 4 23 23 C 1.38808 * 120.00410 * 180.02562 * 21 20 4 24 24 N 1.31625 * 119.99828 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00548 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46871 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47349 * 119.99885 * 25 23 21 28 28 H 1.48505 * 109.47162 * 240.00080 * 25 23 21 29 29 H 1.09001 * 109.47624 * 300.00074 * 1 2 3 30 30 H 1.09002 * 109.46642 * 60.00262 * 1 2 3 31 31 H 1.09002 * 109.47069 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47624 * 239.99926 * 2 1 3 33 33 H 1.09001 * 109.47336 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47375 * 299.99881 * 3 2 1 35 35 H 1.09001 * 109.47456 * 59.99524 * 3 2 1 36 36 H 1.09002 * 109.47398 * 305.00335 * 6 4 2 37 37 H 1.09001 * 109.47194 * 65.00515 * 6 4 2 38 38 H 0.97000 * 120.00420 * 0.02562 * 7 6 4 39 39 H 1.09002 * 109.47152 * 300.00160 * 10 8 7 40 40 H 1.09001 * 109.46980 * 60.00059 * 10 8 7 41 41 H 1.07992 * 120.75792 * 359.97438 * 12 11 10 42 42 H 1.07994 * 120.47189 * 179.97438 * 13 12 11 43 43 H 0.97002 * 119.99249 * 0.02562 * 16 15 14 44 44 H 0.96996 * 120.00044 * 179.97438 * 16 15 14 45 45 H 1.08003 * 119.54471 * 180.31086 * 19 18 14 46 46 H 0.96996 * 120.00090 * 94.99890 * 20 4 2 47 47 H 0.96994 * 120.00251 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6766 -0.2074 2.1392 6 6 3.5700 -0.7218 1.2490 7 7 4.0582 -1.5140 2.3805 8 6 5.3833 -1.6552 2.5824 9 8 6.1714 -1.1270 1.8270 10 6 5.8855 -2.4706 3.7460 11 6 7.3925 -2.4701 3.7465 12 6 8.0918 -1.4900 4.4336 13 6 9.4771 -1.5255 4.4081 14 6 10.1148 -2.5397 3.6973 15 6 11.5952 -2.5914 3.6597 16 7 12.2182 -3.5698 2.9733 17 8 12.2476 -1.7511 4.2471 18 7 9.4078 -3.4593 3.0526 19 6 8.0926 -3.4523 3.0647 20 7 1.5516 -2.1025 1.2493 21 6 0.3101 -2.3897 1.7504 22 1 -0.3090 -1.5981 2.1461 23 6 -0.1524 -3.6985 1.7509 24 7 0.6022 -4.6633 1.2692 25 14 -1.8464 -4.0903 2.4339 26 1 -2.4894 -2.8394 2.9104 27 1 -2.6806 -4.7013 1.3681 28 1 -1.7155 -5.0416 3.5666 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.9330 -1.1564 0.3176 37 1 3.9337 0.3019 1.3384 38 1 3.4278 -1.9368 2.9845 39 1 5.5220 -2.0367 4.6775 40 1 5.5222 -3.4944 3.6560 41 1 7.5691 -0.7159 4.9756 42 1 10.0538 -0.7776 4.9319 43 1 11.6973 -4.2399 2.5036 44 1 13.1872 -3.6034 2.9484 45 1 7.5510 -4.2202 2.5324 46 1 2.1078 -2.8135 0.8944 47 1 0.2789 -5.5778 1.2692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715596544.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:57 Heat of formation + Delta-G solvation = -68.570586 kcal Electronic energy + Delta-G solvation = -28051.256931 eV Core-core repulsion = 24039.548415 eV Total energy + Delta-G solvation = -4011.708516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.77185 -40.69742 -39.77016 -38.68908 -35.24595 -35.11858 -34.88415 -34.21245 -33.01153 -32.15142 -30.25498 -28.73228 -27.42583 -25.71845 -24.96925 -24.41959 -23.20122 -22.00242 -21.37607 -20.63939 -19.28603 -19.15781 -18.31371 -17.92243 -17.36719 -17.07942 -16.88573 -16.21935 -16.16290 -15.96957 -15.93052 -15.60259 -15.22882 -14.94236 -14.91449 -14.67714 -14.43117 -14.14578 -14.09459 -13.80389 -13.42007 -13.16355 -12.90203 -12.85998 -12.76729 -12.64207 -12.39602 -12.23887 -11.94914 -11.73285 -11.60130 -11.42492 -11.26075 -11.09049 -10.85469 -10.78779 -10.74072 -10.65379 -10.04893 -9.93619 -8.91868 -7.84558 -5.10799 -0.45270 0.21417 1.51059 1.54907 1.59630 1.61194 1.71740 2.32232 2.39175 2.62463 2.85445 3.19046 3.49136 3.59856 3.80778 3.89791 3.92318 3.96875 3.98007 4.03044 4.21312 4.32743 4.35517 4.49062 4.53438 4.67364 4.71605 4.73877 4.82580 4.94460 4.96376 5.01198 5.10495 5.15177 5.17685 5.28954 5.35985 5.53733 5.58479 5.65277 5.68081 5.76758 5.78913 6.22948 6.36155 6.67191 6.70256 7.18558 7.32794 7.44668 8.15853 8.41081 9.38271 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015622 B = 0.002315 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.930840 B =12090.433861 C =13262.399273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 C -0.141 4.141 4 C 0.173 3.827 5 H 0.059 0.941 6 C 0.124 3.876 7 N -0.710 5.710 8 C 0.512 3.488 9 O -0.586 6.586 10 C -0.097 4.097 11 C -0.086 4.086 12 C -0.069 4.069 13 C -0.115 4.115 14 C 0.045 3.955 15 C 0.577 3.423 16 N -0.817 5.817 17 O -0.575 6.575 18 N -0.463 5.463 19 C 0.100 3.900 20 N -0.726 5.726 21 C -0.210 4.210 22 H 0.079 0.921 23 C -0.070 4.070 24 N -0.965 5.965 25 Si 0.954 3.046 26 H -0.268 1.268 27 H -0.306 1.306 28 H -0.298 1.298 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.078 0.922 38 H 0.413 0.587 39 H 0.139 0.861 40 H 0.129 0.871 41 H 0.166 0.834 42 H 0.153 0.847 43 H 0.420 0.580 44 H 0.415 0.585 45 H 0.176 0.824 46 H 0.373 0.627 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.758 5.501 5.787 15.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 C -0.198 4.198 4 C 0.064 3.936 5 H 0.077 0.923 6 C -0.001 4.001 7 N -0.361 5.361 8 C 0.300 3.700 9 O -0.467 6.467 10 C -0.137 4.137 11 C -0.089 4.089 12 C -0.095 4.095 13 C -0.136 4.136 14 C -0.092 4.092 15 C 0.361 3.639 16 N -0.380 5.380 17 O -0.455 6.455 18 N -0.174 5.174 19 C -0.060 4.060 20 N -0.365 5.365 21 C -0.342 4.342 22 H 0.096 0.904 23 C -0.263 4.263 24 N -0.617 5.617 25 Si 0.786 3.214 26 H -0.192 1.192 27 H -0.234 1.234 28 H -0.226 1.226 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.250 0.750 39 H 0.157 0.843 40 H 0.147 0.853 41 H 0.184 0.816 42 H 0.170 0.830 43 H 0.252 0.748 44 H 0.248 0.752 45 H 0.193 0.807 46 H 0.205 0.795 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.877 5.857 5.304 16.845 hybrid contribution -1.495 -0.780 0.214 1.700 sum 13.382 5.078 5.518 15.340 Atomic orbital electron populations 1.21734 0.95501 1.01750 1.00228 1.21644 0.96335 0.96273 0.98688 1.21847 1.00851 0.95037 1.02102 1.20674 0.90294 0.86042 0.96597 0.92341 1.21555 0.94306 0.95548 0.88707 1.45975 1.06947 1.52613 1.30542 1.20896 0.81981 0.80681 0.86474 1.90698 1.56194 1.50625 1.49164 1.20712 0.90623 1.03618 0.98717 1.20740 0.96349 0.95460 0.96319 1.21802 0.93308 0.97467 0.96882 1.22227 0.95471 0.98103 0.97775 1.21128 0.94064 0.94932 0.99112 1.17992 0.86447 0.81238 0.78263 1.43514 1.11886 1.29997 1.52588 1.90798 1.66837 1.40908 1.46944 1.67479 1.09122 1.24060 1.16781 1.22991 0.89099 0.98144 0.95766 1.42565 1.17207 1.03350 1.73418 1.19475 0.93258 0.91957 1.29498 0.90358 1.25295 1.00960 0.96316 1.03693 1.69791 1.38156 0.99689 1.54041 0.85350 0.81354 0.77768 0.76965 1.19213 1.23380 1.22564 0.93394 0.93287 0.93164 0.93336 0.92394 0.92337 0.92144 0.93653 0.90343 0.75011 0.84307 0.85263 0.81603 0.82960 0.74818 0.75242 0.80662 0.79472 0.94479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 8.26 71.98 0.59 -3.82 16 2 C -0.11 -3.32 2.69 -10.79 -0.03 -3.35 16 3 C -0.14 -3.37 8.84 71.98 0.64 -2.73 16 4 C 0.17 5.65 2.18 44.99 0.10 5.75 16 5 H 0.06 1.90 8.08 -2.39 -0.02 1.88 16 6 C 0.12 3.69 4.73 86.38 0.41 4.10 16 7 N -0.71 -19.46 5.39 -463.05 -2.49 -21.95 16 8 C 0.51 13.55 7.82 87.66 0.69 14.24 16 9 O -0.59 -20.01 16.03 -3.02 -0.05 -20.06 16 10 C -0.10 -1.70 5.85 29.10 0.17 -1.53 16 11 C -0.09 -1.73 4.40 -19.70 -0.09 -1.82 16 12 C -0.07 -1.31 9.85 22.45 0.22 -1.09 16 13 C -0.11 -2.48 9.63 22.61 0.22 -2.27 16 14 C 0.05 1.07 6.75 41.91 0.28 1.35 16 15 C 0.58 13.50 8.08 86.88 0.70 14.20 16 16 N -0.82 -12.63 8.86 -175.37 -1.55 -14.18 16 17 O -0.58 -16.83 17.16 -3.79 -0.06 -16.89 16 18 N -0.46 -10.60 9.54 -184.91 -1.76 -12.37 16 19 C 0.10 2.16 10.86 84.81 0.92 3.08 16 20 N -0.73 -30.41 4.44 -322.94 -1.43 -31.84 16 21 C -0.21 -9.90 7.57 84.03 0.64 -9.26 16 22 H 0.08 3.59 7.40 -2.91 -0.02 3.56 16 23 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16 24 N -0.97 -53.79 13.06 21.65 0.28 -53.51 16 25 Si 0.95 42.60 29.55 68.60 2.03 44.63 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.31 -14.19 7.11 99.48 0.71 -13.49 16 28 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 2.01 6.01 -2.39 -0.01 2.00 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.32 6.54 -2.39 -0.02 1.30 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.08 2.17 6.71 -2.39 -0.02 2.15 16 38 H 0.41 11.18 8.14 -92.71 -0.75 10.43 16 39 H 0.14 1.61 8.09 -2.39 -0.02 1.59 16 40 H 0.13 1.93 8.09 -2.39 -0.02 1.91 16 41 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 42 H 0.15 3.03 7.64 -2.91 -0.02 3.01 16 43 H 0.42 5.42 8.16 -92.71 -0.76 4.66 16 44 H 0.41 4.63 8.93 -92.71 -0.83 3.80 16 45 H 0.18 3.18 8.06 -2.91 -0.02 3.15 16 46 H 0.37 17.53 7.80 -92.71 -0.72 16.81 16 47 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 Total: -1.00 -68.21 393.24 -1.15 -69.36 By element: Atomic # 1 Polarization: 45.15 SS G_CDS: -2.02 Total: 43.13 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 5.93 Total: 13.70 kcal Atomic # 7 Polarization: -126.89 SS G_CDS: -6.96 Total: -133.86 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.11 Total: -36.95 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -68.21 -1.15 -69.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715596544.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.785 kcal (2) G-P(sol) polarization free energy of solvation -68.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds