Wall clock time and date at job start Tue Mar 31 2020 18:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 119.99828 * 2 1 4 4 O 1.21513 * 119.99898 * 0.28095 * 3 2 1 5 5 C 1.48232 * 120.00016 * 180.27596 * 3 2 1 6 6 C 1.39622 * 119.65160 * 179.72543 * 5 3 2 7 7 C 1.38547 * 119.24435 * 179.77278 * 6 5 3 8 8 C 1.38586 * 118.55365 * 0.49883 * 7 6 5 9 9 C 1.39588 * 119.24330 * 359.74702 * 8 7 6 10 10 C 1.48221 * 119.65310 * 180.02562 * 9 8 7 11 11 O 1.21516 * 120.00105 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00135 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99920 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.47124 * 179.97438 * 13 12 10 15 15 H 1.09006 * 109.46703 * 64.99932 * 14 13 12 16 16 N 1.46503 * 109.47023 * 305.00170 * 14 13 12 17 17 C 1.36938 * 119.99787 * 154.99703 * 16 14 13 18 18 H 1.08000 * 119.99856 * 0.02562 * 17 16 14 19 19 C 1.38813 * 119.99829 * 179.97438 * 17 16 14 20 20 N 1.31618 * 119.99884 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99787 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47538 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47076 * 120.00031 * 21 19 17 24 24 H 1.48494 * 109.47326 * 240.00336 * 21 19 17 25 25 C 1.53001 * 109.47128 * 184.99809 * 14 13 12 26 26 C 1.53006 * 109.46963 * 65.00363 * 25 14 13 27 27 C 1.52993 * 109.46823 * 184.99904 * 25 14 13 28 28 N 1.32336 * 119.65143 * 0.02562 * 5 3 2 29 29 H 1.09001 * 109.47007 * 179.72339 * 1 2 3 30 30 H 1.09004 * 109.46963 * 299.72135 * 1 2 3 31 31 H 1.08994 * 109.47567 * 59.72287 * 1 2 3 32 32 H 0.97001 * 120.00384 * 180.28447 * 2 1 3 33 33 H 1.07999 * 120.37985 * 0.02562 * 6 5 3 34 34 H 1.07999 * 120.72791 * 180.22525 * 7 6 5 35 35 H 1.07995 * 120.38051 * 179.72871 * 8 7 6 36 36 H 0.97001 * 120.00274 * 359.97438 * 12 10 9 37 37 H 1.08997 * 109.47246 * 299.99744 * 13 12 10 38 38 H 1.08998 * 109.47387 * 59.99922 * 13 12 10 39 39 H 0.96997 * 119.99693 * 334.99943 * 16 14 13 40 40 H 0.96997 * 119.99691 * 179.97438 * 20 19 17 41 41 H 1.08994 * 109.47028 * 305.00256 * 25 14 13 42 42 H 1.08998 * 109.47107 * 59.99633 * 26 25 14 43 43 H 1.08995 * 109.47215 * 179.97438 * 26 25 14 44 44 H 1.09007 * 109.46915 * 300.00023 * 26 25 14 45 45 H 1.08994 * 109.47606 * 299.99998 * 27 25 14 46 46 H 1.09000 * 109.47502 * 60.00478 * 27 25 14 47 47 H 1.09005 * 109.46809 * 180.02562 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5312 2.2195 0.0052 5 6 3.6211 1.1673 -0.0062 6 6 4.3118 2.3807 -0.0120 7 6 5.6973 2.3709 -0.0129 8 6 6.3511 1.1490 -0.0187 9 6 5.5989 -0.0269 -0.0179 10 6 6.2888 -1.3388 -0.0235 11 8 7.5030 -1.3867 -0.0291 12 7 5.5694 -2.4785 -0.0223 13 6 6.2513 -3.7751 -0.0283 14 6 5.2120 -4.8980 -0.0249 15 1 4.6415 -4.8678 -0.9532 16 7 4.3049 -4.7203 1.1118 17 6 3.0391 -5.2405 1.0653 18 1 2.7096 -5.7822 0.1910 19 6 2.1798 -5.0726 2.1425 20 7 2.5815 -4.4130 3.2082 21 14 0.4533 -5.7829 2.0795 22 1 0.2496 -6.4746 0.7812 23 1 0.2763 -6.7531 3.1897 24 1 -0.5385 -4.6864 2.2175 25 6 5.9208 -6.2486 0.0945 26 6 6.6195 -6.3396 1.4527 27 6 4.8938 -7.3760 -0.0272 28 7 4.2759 0.0172 -0.0122 29 1 -0.3633 -1.0277 -0.0050 30 1 -0.3633 0.5095 0.8925 31 1 -0.3634 0.5181 -0.8874 32 1 1.9500 -0.8400 -0.0042 33 1 3.7723 3.3163 -0.0115 34 1 6.2556 3.2954 -0.0137 35 1 7.4302 1.1069 -0.0240 36 1 4.6001 -2.4403 -0.0174 37 1 6.8708 -3.8557 -0.9216 38 1 6.8796 -3.8594 0.8583 39 1 4.6010 -4.2341 1.8971 40 1 1.9810 -4.2954 3.9608 41 1 6.6597 -6.3427 -0.7012 42 1 5.8806 -6.2455 2.2484 43 1 7.1241 -7.3020 1.5380 44 1 7.3512 -5.5363 1.5394 45 1 4.1549 -7.2819 0.7686 46 1 4.3960 -7.3113 -0.9947 47 1 5.3987 -8.3383 0.0583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715712438.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:39 Heat of formation + Delta-G solvation = -29.917581 kcal Electronic energy + Delta-G solvation = -29360.973066 eV Core-core repulsion = 25350.940671 eV Total energy + Delta-G solvation = -4010.032396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.92000 -39.51268 -38.55418 -37.27502 -34.68582 -34.05564 -32.94174 -32.76389 -31.81193 -30.19254 -28.07532 -27.22797 -26.40369 -24.92006 -24.17217 -23.49612 -22.11617 -20.84977 -20.31095 -19.04154 -18.39473 -17.66627 -17.19384 -16.24165 -16.09523 -15.77261 -15.60089 -15.25738 -15.11953 -14.74138 -14.40925 -14.27739 -13.91831 -13.72700 -13.46700 -13.38028 -13.09265 -12.98622 -12.69702 -12.31065 -12.22084 -12.18568 -11.94037 -11.33684 -11.04342 -11.00453 -10.85189 -10.79711 -10.57083 -10.31276 -10.22799 -10.14476 -10.00780 -9.93134 -9.62371 -9.49874 -9.44502 -9.07533 -8.97182 -8.67133 -7.05394 -5.84539 -3.13393 0.35519 0.76214 2.42462 3.06985 3.08741 3.29485 3.34811 3.42245 3.44369 3.84990 3.89549 4.50203 4.59140 4.68339 4.76409 4.78601 5.24524 5.30129 5.33554 5.37637 5.40463 5.49475 5.53336 5.70321 5.71535 5.80569 5.81829 5.84215 5.85970 6.05969 6.19606 6.25659 6.31604 6.37260 6.39331 6.51168 6.61179 6.66252 6.79300 6.86014 7.04973 7.24098 7.27290 7.55579 7.64109 7.88444 8.12254 8.31921 8.40771 9.44578 9.99327 10.35668 11.36876 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008855 B = 0.004619 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.119600 B = 6060.134555 C = 8675.453453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.707 5.707 3 C 0.573 3.427 4 O -0.540 6.540 5 C 0.079 3.921 6 C -0.095 4.095 7 C -0.088 4.088 8 C -0.093 4.093 9 C 0.087 3.913 10 C 0.566 3.434 11 O -0.545 6.545 12 N -0.687 5.687 13 C 0.109 3.891 14 C 0.167 3.833 15 H 0.054 0.946 16 N -0.717 5.717 17 C -0.235 4.235 18 H 0.073 0.927 19 C -0.009 4.009 20 N -0.926 5.926 21 Si 0.899 3.101 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.293 1.293 25 C -0.107 4.107 26 C -0.141 4.141 27 C -0.142 4.142 28 N -0.425 5.425 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.419 0.581 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.419 0.581 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.386 0.614 40 H 0.254 0.746 41 H 0.049 0.951 42 H 0.071 0.929 43 H 0.037 0.963 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.039 0.961 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.457 8.867 -7.887 12.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.358 5.358 3 C 0.357 3.643 4 O -0.417 6.417 5 C -0.062 4.062 6 C -0.116 4.116 7 C -0.114 4.114 8 C -0.114 4.114 9 C -0.054 4.054 10 C 0.349 3.651 11 O -0.423 6.423 12 N -0.338 5.338 13 C -0.015 4.015 14 C 0.057 3.943 15 H 0.072 0.928 16 N -0.359 5.359 17 C -0.366 4.366 18 H 0.091 0.909 19 C -0.205 4.205 20 N -0.574 5.574 21 Si 0.730 3.270 22 H -0.206 1.206 23 H -0.221 1.221 24 H -0.220 1.220 25 C -0.129 4.129 26 C -0.198 4.198 27 C -0.199 4.199 28 N -0.140 5.140 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.256 0.744 33 H 0.170 0.830 34 H 0.167 0.833 35 H 0.171 0.829 36 H 0.258 0.742 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.220 0.780 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.058 0.942 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.168 8.645 -7.925 12.446 hybrid contribution -0.666 0.022 0.425 0.790 sum 3.502 8.666 -7.500 11.984 Atomic orbital electron populations 1.21624 0.78957 1.03076 1.02087 1.45666 1.08052 1.09251 1.72827 1.17829 0.85522 0.84214 0.76740 1.90767 1.68760 1.31355 1.50841 1.21112 0.94339 0.89323 1.01421 1.22297 0.94738 0.99423 0.95143 1.21642 0.93938 0.98613 0.97196 1.22346 1.02626 0.91670 0.94736 1.21255 0.89009 0.94774 1.00359 1.17784 0.86453 0.83263 0.77572 1.90761 1.12912 1.87088 1.51574 1.45851 1.11992 1.04839 1.71069 1.21851 0.95793 0.82021 1.01853 1.20553 0.90118 0.90566 0.93071 0.92791 1.42421 1.11365 1.65926 1.16142 1.19220 0.88849 1.27911 1.00611 0.90916 1.24691 0.98121 1.01092 0.96627 1.69666 1.35660 1.45769 1.06297 0.86256 0.85173 0.78345 0.77213 1.20627 1.22056 1.22011 1.21609 0.96975 0.97464 0.96802 1.21774 1.00028 0.99396 0.98597 1.21837 0.99692 0.95907 1.02449 1.67432 1.09342 1.29177 1.08037 0.89899 0.92000 0.92145 0.74407 0.83009 0.83284 0.82857 0.74241 0.91635 0.91099 0.78015 0.93610 0.93248 0.90957 0.94422 0.93802 0.89564 0.94157 0.94864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.03 10.70 59.85 0.64 1.67 16 2 N -0.71 -9.84 5.70 -67.92 -0.39 -10.23 16 3 C 0.57 8.55 7.81 -12.15 -0.09 8.45 16 4 O -0.54 -9.02 16.32 5.35 0.09 -8.93 16 5 C 0.08 1.09 6.75 -83.03 -0.56 0.53 16 6 C -0.10 -1.06 9.63 -38.95 -0.38 -1.44 16 7 C -0.09 -0.83 10.16 -39.34 -0.40 -1.23 16 8 C -0.09 -1.07 9.63 -38.95 -0.38 -1.45 16 9 C 0.09 1.26 6.75 -83.03 -0.56 0.70 16 10 C 0.57 9.27 7.81 -12.16 -0.09 9.17 16 11 O -0.55 -9.90 16.32 5.35 0.09 -9.81 16 12 N -0.69 -11.24 5.38 -61.13 -0.33 -11.56 16 13 C 0.11 1.76 5.10 -4.04 -0.02 1.74 16 14 C 0.17 2.90 2.28 -67.92 -0.16 2.74 16 15 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 16 N -0.72 -15.13 3.53 -53.42 -0.19 -15.32 16 17 C -0.23 -5.57 7.75 -15.06 -0.12 -5.69 16 18 H 0.07 1.71 7.32 -52.49 -0.38 1.32 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 20 N -0.93 -25.43 13.06 55.49 0.72 -24.71 16 21 Si 0.90 20.58 29.55 -169.99 -5.02 15.56 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 C -0.11 -1.73 2.74 -90.62 -0.25 -1.98 16 26 C -0.14 -2.32 8.74 37.16 0.32 -1.99 16 27 C -0.14 -2.40 8.46 37.15 0.31 -2.08 16 28 N -0.43 -6.20 8.71 -6.38 -0.06 -6.26 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.42 5.92 8.16 -40.82 -0.33 5.58 16 33 H 0.15 1.49 7.64 -52.49 -0.40 1.09 16 34 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 35 H 0.15 1.59 7.64 -52.49 -0.40 1.19 16 36 H 0.42 7.13 7.47 -40.82 -0.30 6.82 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.21 6.34 -51.93 -0.33 0.88 16 39 H 0.39 9.08 7.80 -40.82 -0.32 8.77 16 40 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.41 7.47 -51.93 -0.39 1.02 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.04 0.68 6.46 -51.93 -0.34 0.35 16 45 H 0.09 1.73 5.99 -51.93 -0.31 1.42 16 46 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 391.60 15.07 5.90 5.90 Total: -1.00 -29.15 391.60 -7.87 -37.02 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: -6.87 Total: 19.51 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: -1.82 Total: 8.83 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: -0.24 Total: -68.09 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.17 Total: -18.74 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.15 -7.87 -37.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715712438.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.101 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds