Wall clock time and date at job start Tue Mar 31 2020 18:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 119.99828 * 2 1 4 4 O 1.21513 * 119.99898 * 0.28095 * 3 2 1 5 5 C 1.48232 * 120.00016 * 180.27596 * 3 2 1 6 6 C 1.39622 * 119.65160 * 179.72543 * 5 3 2 7 7 C 1.38547 * 119.24435 * 179.77278 * 6 5 3 8 8 C 1.38586 * 118.55365 * 0.49883 * 7 6 5 9 9 C 1.39588 * 119.24330 * 359.74702 * 8 7 6 10 10 C 1.48221 * 119.65310 * 180.02562 * 9 8 7 11 11 O 1.21516 * 120.00105 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00135 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99920 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.47124 * 179.97438 * 13 12 10 15 15 H 1.09006 * 109.46703 * 64.99932 * 14 13 12 16 16 N 1.46503 * 109.47023 * 305.00170 * 14 13 12 17 17 C 1.36938 * 119.99787 * 154.99703 * 16 14 13 18 18 H 1.08000 * 119.99856 * 0.02562 * 17 16 14 19 19 C 1.38813 * 119.99829 * 179.97438 * 17 16 14 20 20 N 1.31618 * 119.99884 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99787 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47538 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47076 * 120.00031 * 21 19 17 24 24 H 1.48494 * 109.47326 * 240.00336 * 21 19 17 25 25 C 1.53001 * 109.47128 * 184.99809 * 14 13 12 26 26 C 1.53006 * 109.46963 * 65.00363 * 25 14 13 27 27 C 1.52993 * 109.46823 * 184.99904 * 25 14 13 28 28 N 1.32336 * 119.65143 * 0.02562 * 5 3 2 29 29 H 1.09001 * 109.47007 * 179.72339 * 1 2 3 30 30 H 1.09004 * 109.46963 * 299.72135 * 1 2 3 31 31 H 1.08994 * 109.47567 * 59.72287 * 1 2 3 32 32 H 0.97001 * 120.00384 * 180.28447 * 2 1 3 33 33 H 1.07999 * 120.37985 * 0.02562 * 6 5 3 34 34 H 1.07999 * 120.72791 * 180.22525 * 7 6 5 35 35 H 1.07995 * 120.38051 * 179.72871 * 8 7 6 36 36 H 0.97001 * 120.00274 * 359.97438 * 12 10 9 37 37 H 1.08997 * 109.47246 * 299.99744 * 13 12 10 38 38 H 1.08998 * 109.47387 * 59.99922 * 13 12 10 39 39 H 0.96997 * 119.99693 * 334.99943 * 16 14 13 40 40 H 0.96997 * 119.99691 * 179.97438 * 20 19 17 41 41 H 1.08994 * 109.47028 * 305.00256 * 25 14 13 42 42 H 1.08998 * 109.47107 * 59.99633 * 26 25 14 43 43 H 1.08995 * 109.47215 * 179.97438 * 26 25 14 44 44 H 1.09007 * 109.46915 * 300.00023 * 26 25 14 45 45 H 1.08994 * 109.47606 * 299.99998 * 27 25 14 46 46 H 1.09000 * 109.47502 * 60.00478 * 27 25 14 47 47 H 1.09005 * 109.46809 * 180.02562 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5312 2.2195 0.0052 5 6 3.6211 1.1673 -0.0062 6 6 4.3118 2.3807 -0.0120 7 6 5.6973 2.3709 -0.0129 8 6 6.3511 1.1490 -0.0187 9 6 5.5989 -0.0269 -0.0179 10 6 6.2888 -1.3388 -0.0235 11 8 7.5030 -1.3867 -0.0291 12 7 5.5694 -2.4785 -0.0223 13 6 6.2513 -3.7751 -0.0283 14 6 5.2120 -4.8980 -0.0249 15 1 4.6415 -4.8678 -0.9532 16 7 4.3049 -4.7203 1.1118 17 6 3.0391 -5.2405 1.0653 18 1 2.7096 -5.7822 0.1910 19 6 2.1798 -5.0726 2.1425 20 7 2.5815 -4.4130 3.2082 21 14 0.4533 -5.7829 2.0795 22 1 0.2496 -6.4746 0.7812 23 1 0.2763 -6.7531 3.1897 24 1 -0.5385 -4.6864 2.2175 25 6 5.9208 -6.2486 0.0945 26 6 6.6195 -6.3396 1.4527 27 6 4.8938 -7.3760 -0.0272 28 7 4.2759 0.0172 -0.0122 29 1 -0.3633 -1.0277 -0.0050 30 1 -0.3633 0.5095 0.8925 31 1 -0.3634 0.5181 -0.8874 32 1 1.9500 -0.8400 -0.0042 33 1 3.7723 3.3163 -0.0115 34 1 6.2556 3.2954 -0.0137 35 1 7.4302 1.1069 -0.0240 36 1 4.6001 -2.4403 -0.0174 37 1 6.8708 -3.8557 -0.9216 38 1 6.8796 -3.8594 0.8583 39 1 4.6010 -4.2341 1.8971 40 1 1.9810 -4.2954 3.9608 41 1 6.6597 -6.3427 -0.7012 42 1 5.8806 -6.2455 2.2484 43 1 7.1241 -7.3020 1.5380 44 1 7.3512 -5.5363 1.5394 45 1 4.1549 -7.2819 0.7686 46 1 4.3960 -7.3113 -0.9947 47 1 5.3987 -8.3383 0.0583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715712438.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:37 Heat of formation + Delta-G solvation = -50.663056 kcal Electronic energy + Delta-G solvation = -29361.872658 eV Core-core repulsion = 25350.940671 eV Total energy + Delta-G solvation = -4010.931987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.96558 -40.73724 -39.72471 -38.70892 -35.79882 -35.38198 -34.69653 -33.72714 -32.84585 -31.87084 -29.54103 -28.24181 -27.77706 -26.18614 -25.33588 -24.96015 -23.44695 -21.94835 -21.53039 -20.36542 -19.61368 -19.13241 -18.67425 -17.27290 -17.10388 -17.00997 -16.84068 -16.57211 -16.28679 -16.17761 -15.81806 -15.60481 -15.16121 -15.03799 -14.83225 -14.59515 -14.42985 -14.20295 -13.82225 -13.72987 -13.35907 -13.16332 -13.14659 -12.88727 -12.78639 -12.66892 -12.37561 -12.14501 -11.96471 -11.89819 -11.83660 -11.37282 -11.21305 -11.12889 -11.11199 -10.82907 -10.67344 -10.49918 -10.17159 -9.96290 -8.88235 -7.80938 -5.06408 -0.62567 -0.18612 1.36627 1.50025 1.54549 1.60660 1.88738 2.02577 2.13318 2.63701 2.79523 2.81999 3.51823 3.57902 3.80327 3.81578 3.91949 3.94445 3.98076 4.29093 4.31904 4.38056 4.39247 4.44583 4.47953 4.56901 4.70857 4.77545 4.85862 4.92462 4.96107 4.98598 5.02508 5.14749 5.25807 5.28655 5.32107 5.36771 5.38824 5.52398 5.63689 5.68414 5.84838 6.16821 6.38192 6.41479 6.64329 6.99669 7.11865 7.47380 8.19312 8.44692 9.41598 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008855 B = 0.004619 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.119600 B = 6060.134555 C = 8675.453453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.709 5.709 3 C 0.569 3.431 4 O -0.564 6.564 5 C 0.057 3.943 6 C -0.088 4.088 7 C -0.066 4.066 8 C -0.087 4.087 9 C 0.062 3.938 10 C 0.565 3.435 11 O -0.567 6.567 12 N -0.690 5.690 13 C 0.116 3.884 14 C 0.169 3.831 15 H 0.057 0.943 16 N -0.719 5.719 17 C -0.207 4.207 18 H 0.079 0.921 19 C -0.067 4.067 20 N -0.963 5.963 21 Si 0.950 3.050 22 H -0.268 1.268 23 H -0.308 1.308 24 H -0.298 1.298 25 C -0.104 4.104 26 C -0.134 4.134 27 C -0.138 4.138 28 N -0.441 5.441 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.417 0.583 33 H 0.168 0.832 34 H 0.197 0.803 35 H 0.167 0.833 36 H 0.416 0.584 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.373 0.627 40 H 0.243 0.757 41 H 0.080 0.920 42 H 0.035 0.965 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.047 0.953 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.745 9.548 -9.596 14.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.359 5.359 3 C 0.354 3.646 4 O -0.443 6.443 5 C -0.084 4.084 6 C -0.108 4.108 7 C -0.092 4.092 8 C -0.108 4.108 9 C -0.079 4.079 10 C 0.350 3.650 11 O -0.446 6.446 12 N -0.340 5.340 13 C -0.008 4.008 14 C 0.060 3.940 15 H 0.075 0.925 16 N -0.359 5.359 17 C -0.339 4.339 18 H 0.096 0.904 19 C -0.259 4.259 20 N -0.615 5.615 21 Si 0.782 3.218 22 H -0.192 1.192 23 H -0.237 1.237 24 H -0.226 1.226 25 C -0.125 4.125 26 C -0.191 4.191 27 C -0.195 4.195 28 N -0.155 5.155 29 H 0.113 0.887 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.253 0.747 33 H 0.186 0.814 34 H 0.214 0.786 35 H 0.185 0.815 36 H 0.253 0.747 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.205 0.795 40 H 0.052 0.948 41 H 0.098 0.902 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.464 9.289 -9.692 14.493 hybrid contribution -0.978 -0.196 0.879 1.329 sum 4.486 9.093 -8.813 13.434 Atomic orbital electron populations 1.21750 0.78040 1.03973 1.02303 1.45787 1.08837 1.09002 1.72252 1.18081 0.86213 0.84032 0.76284 1.90740 1.69372 1.31923 1.52247 1.21131 0.93806 0.90245 1.03211 1.22583 0.95692 0.98946 0.93624 1.22107 0.93128 0.99478 0.94448 1.22593 1.03245 0.91439 0.93474 1.21130 0.89237 0.94726 1.02819 1.18088 0.86286 0.83904 0.76735 1.90734 1.13671 1.87538 1.52706 1.45874 1.11755 1.05158 1.71188 1.21774 0.95274 0.81564 1.02188 1.20698 0.89956 0.91881 0.91495 0.92497 1.42481 1.11255 1.65413 1.16746 1.19468 0.89369 1.25241 0.99781 0.90359 1.25221 1.00939 1.02796 0.96955 1.69807 1.36285 1.48448 1.06961 0.85410 0.82195 0.77214 0.76973 1.19235 1.23695 1.22559 1.21574 0.97292 0.96055 0.97572 1.21688 0.99268 1.00677 0.97492 1.21763 0.99174 0.97166 1.01413 1.67269 1.09671 1.29985 1.08625 0.88698 0.92454 0.91213 0.74705 0.81442 0.78602 0.81503 0.74712 0.89844 0.92082 0.79527 0.94771 0.90206 0.94575 0.92708 0.93090 0.93117 0.93353 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.98 10.70 127.77 1.37 3.35 16 2 N -0.71 -20.03 5.70 -487.09 -2.78 -22.80 16 3 C 0.57 17.01 7.81 86.90 0.68 17.69 16 4 O -0.56 -18.72 16.32 -3.76 -0.06 -18.79 16 5 C 0.06 1.54 6.75 42.06 0.28 1.82 16 6 C -0.09 -1.76 9.63 22.68 0.22 -1.55 16 7 C -0.07 -1.01 10.16 22.43 0.23 -0.78 16 8 C -0.09 -1.81 9.63 22.68 0.22 -1.59 16 9 C 0.06 1.73 6.75 42.04 0.28 2.02 16 10 C 0.56 18.28 7.81 86.90 0.68 18.96 16 11 O -0.57 -20.12 16.32 -3.77 -0.06 -20.19 16 12 N -0.69 -22.47 5.38 -465.59 -2.50 -24.97 16 13 C 0.12 3.62 5.10 86.38 0.44 4.06 16 14 C 0.17 5.66 2.28 44.99 0.10 5.76 16 15 H 0.06 1.91 8.08 -2.38 -0.02 1.89 16 16 N -0.72 -30.57 3.53 -322.91 -1.14 -31.71 16 17 C -0.21 -9.83 7.75 84.03 0.65 -9.18 16 18 H 0.08 3.61 7.32 -2.91 -0.02 3.59 16 19 C -0.07 -3.46 5.50 84.86 0.47 -3.00 16 20 N -0.96 -54.63 13.06 21.65 0.28 -54.35 16 21 Si 0.95 43.06 29.55 68.60 2.03 45.08 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 23 H -0.31 -14.64 7.11 99.48 0.71 -13.93 16 24 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 25 C -0.10 -3.14 2.74 -10.79 -0.03 -3.17 16 26 C -0.13 -4.26 8.74 71.98 0.63 -3.63 16 27 C -0.14 -4.41 8.46 71.98 0.61 -3.80 16 28 N -0.44 -12.80 8.71 -174.09 -1.52 -14.32 16 29 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.42 12.10 8.16 -92.71 -0.76 11.34 16 33 H 0.17 2.85 7.64 -2.91 -0.02 2.83 16 34 H 0.20 1.16 8.06 -2.91 -0.02 1.14 16 35 H 0.17 3.01 7.64 -2.91 -0.02 2.99 16 36 H 0.42 14.29 7.47 -92.71 -0.69 13.59 16 37 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.06 2.05 6.34 -2.39 -0.02 2.03 16 39 H 0.37 18.00 7.80 -92.71 -0.72 17.27 16 40 H 0.24 13.80 8.31 -92.71 -0.77 13.03 16 41 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.04 1.40 7.47 -2.39 -0.02 1.39 16 43 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.05 1.53 6.46 -2.38 -0.02 1.51 16 45 H 0.05 1.99 5.99 -2.39 -0.01 1.97 16 46 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -64.36 391.60 -0.07 -64.43 By element: Atomic # 1 Polarization: 51.80 SS G_CDS: -1.15 Total: 50.65 kcal Atomic # 6 Polarization: 20.13 SS G_CDS: 6.83 Total: 26.96 kcal Atomic # 7 Polarization: -140.50 SS G_CDS: -7.65 Total: -148.15 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -0.12 Total: -38.97 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -64.36 -0.07 -64.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715712438.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.766 kcal (2) G-P(sol) polarization free energy of solvation -64.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds