Wall clock time and date at job start Tue Mar 31 2020 17:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47223 * 2 1 4 4 C 1.52999 * 109.46945 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46989 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46662 * 55.00238 * 5 4 3 7 7 C 1.52996 * 109.47336 * 174.99994 * 5 4 3 8 8 N 1.46498 * 109.47059 * 175.00083 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47213 * 60.00246 * 13 11 9 15 15 H 1.48502 * 109.47317 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47081 * 299.99875 * 13 11 9 17 17 N 1.46494 * 109.47171 * 295.00630 * 5 4 3 18 18 C 1.34779 * 120.00531 * 84.99693 * 17 5 4 19 19 O 1.21512 * 119.99668 * 0.02562 * 18 17 5 20 20 C 1.48169 * 120.00200 * 179.97438 * 18 17 5 21 21 C 1.39248 * 119.65719 * 179.72725 * 20 18 17 22 22 C 1.39750 * 118.90630 * 179.75336 * 21 20 18 23 23 C 1.48137 * 120.89409 * 180.28272 * 22 21 20 24 24 N 1.34774 * 120.00178 * 180.22897 * 23 22 21 25 25 O 1.21509 * 119.99866 * 0.23241 * 23 22 21 26 26 C 1.39821 * 118.21590 * 0.50766 * 22 21 20 27 27 C 1.38498 * 119.19088 * 359.75181 * 26 22 21 28 28 N 1.31466 * 121.03506 * 359.97438 * 27 26 22 29 29 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47267 * 299.99850 * 1 2 3 31 31 H 1.08995 * 109.47660 * 59.99809 * 1 2 3 32 32 H 1.09001 * 109.47387 * 239.99934 * 2 1 3 33 33 H 1.09002 * 109.47480 * 119.99855 * 2 1 3 34 34 H 1.08997 * 109.46805 * 60.00149 * 3 2 1 35 35 H 1.08995 * 109.46632 * 299.99912 * 3 2 1 36 36 H 1.08997 * 109.47199 * 60.00449 * 4 3 2 37 37 H 1.08995 * 109.47432 * 299.99480 * 4 3 2 38 38 H 1.09004 * 109.47066 * 55.00351 * 7 5 4 39 39 H 1.08994 * 109.46974 * 295.00498 * 7 5 4 40 40 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 41 41 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 42 42 H 0.97009 * 119.99912 * 264.99313 * 17 5 4 43 43 H 1.08001 * 120.54995 * 359.97438 * 21 20 18 44 44 H 0.97003 * 120.00185 * 0.02562 * 24 23 22 45 45 H 0.97005 * 119.99934 * 179.97438 * 24 23 22 46 46 H 1.07996 * 120.39902 * 179.77610 * 26 22 21 47 47 H 1.07990 * 119.47948 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 0.8414 7 6 5.6048 2.8869 0.1264 8 7 6.1030 4.2593 0.0060 9 6 7.4464 4.5101 0.0937 10 1 8.1389 3.6957 0.2472 11 6 7.9180 5.8112 -0.0145 12 7 7.0739 6.8038 -0.2010 13 14 9.7505 6.1533 0.1044 14 1 10.4616 5.4229 -0.9755 15 1 9.9924 7.6112 -0.0410 16 1 10.2544 5.6978 1.4250 17 7 3.6929 3.5393 -1.2522 18 6 2.4756 4.1061 -1.3682 19 8 1.6994 4.0749 -0.4339 20 6 2.0844 4.7684 -2.6346 21 6 0.8228 5.3467 -2.7486 22 6 0.4721 5.9718 -3.9483 23 6 -0.8559 6.6066 -4.1153 24 7 -1.1771 7.2004 -5.2818 25 8 -1.6556 6.5920 -3.2006 26 6 1.4065 5.9777 -4.9884 27 6 2.6377 5.3741 -4.7938 28 7 2.9377 4.7995 -3.6500 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9337 0.9286 -0.8891 37 1 3.9329 0.9289 0.8908 38 1 6.0357 2.2733 -0.6648 39 1 5.8894 2.4808 1.0970 40 1 5.4810 4.9908 -0.1315 41 1 7.4035 7.7129 -0.2771 42 1 4.3127 3.5646 -1.9981 43 1 0.1282 5.3160 -1.9222 44 1 -0.5388 7.2118 -6.0122 45 1 -2.0468 7.6157 -5.3913 46 1 1.1710 6.4475 -5.9319 47 1 3.3631 5.3763 -5.5938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725234318.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:10 Heat of formation + Delta-G solvation = -40.396583 kcal Electronic energy + Delta-G solvation = -28749.272140 eV Core-core repulsion = 24738.785341 eV Total energy + Delta-G solvation = -4010.486799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.00066 -39.71764 -38.80272 -36.49963 -34.87624 -34.39404 -33.55031 -32.66517 -31.78536 -30.93484 -30.20768 -27.24530 -25.48042 -24.45656 -24.00228 -22.28361 -22.09473 -20.72600 -20.66339 -20.00001 -18.77694 -17.56717 -17.33709 -16.90522 -16.22365 -16.03357 -15.66465 -15.32660 -15.06854 -14.91946 -14.73521 -14.53205 -14.13839 -13.88789 -13.80880 -13.64614 -13.22017 -13.07152 -12.69351 -12.57732 -12.25527 -12.01954 -11.87872 -11.28165 -11.04779 -10.88902 -10.80755 -10.77672 -10.72183 -10.35831 -10.30903 -10.22819 -10.14278 -10.10194 -10.01065 -9.70097 -9.55953 -9.42571 -8.88652 -8.58894 -6.92995 -5.74842 -3.04642 0.26256 0.66822 2.41321 2.91919 2.98970 3.35696 3.44589 3.48900 3.49925 3.82366 4.08605 4.24341 4.46646 4.57599 4.62329 4.75592 4.89864 5.09407 5.12286 5.24014 5.40543 5.44583 5.50669 5.51150 5.58043 5.58776 5.69953 5.86984 5.92579 5.99642 6.02070 6.07740 6.19891 6.23151 6.26859 6.33392 6.34959 6.49503 6.52068 6.67127 6.72975 6.82936 6.96502 7.49259 7.69844 7.78437 7.92567 8.42507 8.48521 9.54346 10.10734 10.46031 11.47302 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007872 B = 0.003756 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3556.181233 B = 7452.377457 C =10323.471253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.126 4.126 5 C 0.136 3.864 6 H 0.089 0.911 7 C 0.145 3.855 8 N -0.731 5.731 9 C -0.242 4.242 10 H 0.070 0.930 11 C -0.011 4.011 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.286 1.286 17 N -0.685 5.685 18 C 0.569 3.431 19 O -0.531 6.531 20 C 0.089 3.911 21 C -0.058 4.058 22 C -0.103 4.103 23 C 0.567 3.433 24 N -0.848 5.848 25 O -0.525 6.525 26 C -0.126 4.126 27 C 0.100 3.900 28 N -0.431 5.431 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.034 0.966 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.414 0.586 43 H 0.161 0.839 44 H 0.402 0.598 45 H 0.408 0.592 46 H 0.142 0.858 47 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.223 -6.074 -13.213 21.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.165 4.165 5 C 0.031 3.969 6 H 0.107 0.893 7 C 0.017 3.983 8 N -0.376 5.376 9 C -0.373 4.373 10 H 0.088 0.912 11 C -0.208 4.208 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.213 1.213 15 H -0.218 1.218 16 H -0.213 1.213 17 N -0.335 5.335 18 C 0.352 3.648 19 O -0.407 6.407 20 C -0.049 4.049 21 C -0.079 4.079 22 C -0.114 4.114 23 C 0.351 3.649 24 N -0.412 5.412 25 O -0.401 6.401 26 C -0.147 4.147 27 C -0.059 4.059 28 N -0.143 5.143 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.043 0.957 39 H 0.052 0.948 40 H 0.220 0.780 41 H 0.065 0.935 42 H 0.251 0.749 43 H 0.179 0.821 44 H 0.232 0.768 45 H 0.240 0.760 46 H 0.160 0.840 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -15.159 -6.623 -11.664 20.241 hybrid contribution 0.407 1.265 -1.054 1.696 sum -14.753 -5.358 -12.717 20.201 Atomic orbital electron populations 1.21746 0.96265 1.00815 1.01906 1.21567 0.95610 0.97702 1.01353 1.21681 0.94793 0.95412 1.03197 1.21982 0.96062 0.96168 1.02323 1.21402 0.96288 0.92559 0.86651 0.89254 1.20962 0.89075 0.89459 0.98833 1.42340 1.05452 1.02005 1.87759 1.19165 0.83684 0.92412 1.42076 0.91203 1.24742 0.97603 0.95670 1.02739 1.69669 1.32923 0.98956 1.56300 0.86270 0.85217 0.76841 0.77832 1.21279 1.21758 1.21302 1.45808 1.15353 1.54953 1.17369 1.17657 0.82767 0.78646 0.85699 1.90795 1.51765 1.59503 1.38671 1.21345 0.90912 0.98487 0.94192 1.22246 0.96427 0.91855 0.97402 1.20223 0.94891 1.00918 0.95379 1.18107 0.86337 0.77857 0.82573 1.43684 1.21465 1.60368 1.15717 1.90863 1.50663 1.58333 1.40217 1.22509 0.94617 0.98643 0.98906 1.22835 0.94894 0.93439 0.94768 1.67523 1.33309 1.13735 0.99752 0.93345 0.92736 0.93001 0.92633 0.92378 0.91390 0.91936 0.91859 0.90957 0.95715 0.94792 0.77969 0.93515 0.74890 0.82137 0.76844 0.76037 0.83984 0.81242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 37.15 0.37 -1.28 16 2 C -0.12 -1.45 5.93 -26.73 -0.16 -1.61 16 3 C -0.11 -1.58 3.82 -26.73 -0.10 -1.68 16 4 C -0.13 -1.75 4.89 -26.73 -0.13 -1.88 16 5 C 0.14 2.30 2.41 -67.93 -0.16 2.14 16 6 H 0.09 1.70 7.58 -51.93 -0.39 1.30 16 7 C 0.14 2.84 5.82 -4.04 -0.02 2.81 16 8 N -0.73 -18.31 5.43 -59.91 -0.33 -18.64 16 9 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 10 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 11 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 12 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 13 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 N -0.68 -11.60 4.46 -54.65 -0.24 -11.84 16 18 C 0.57 9.81 6.38 -12.18 -0.08 9.73 16 19 O -0.53 -10.05 13.46 5.35 0.07 -9.98 16 20 C 0.09 1.36 6.75 -83.05 -0.56 0.80 16 21 C -0.06 -0.81 9.20 -38.64 -0.36 -1.16 16 22 C -0.10 -1.13 5.91 -104.68 -0.62 -1.75 16 23 C 0.57 6.08 8.07 -12.20 -0.10 5.98 16 24 N -0.85 -4.78 8.83 30.59 0.27 -4.51 16 25 O -0.53 -7.89 17.28 5.36 0.09 -7.80 16 26 C -0.13 -1.01 9.62 -38.89 -0.37 -1.38 16 27 C 0.10 0.99 11.17 -17.61 -0.20 0.80 16 28 N -0.43 -5.99 9.51 -9.85 -0.09 -6.08 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.04 7.85 -51.93 -0.41 0.64 16 35 H 0.06 0.96 5.64 -51.93 -0.29 0.67 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.39 10.42 7.33 -40.82 -0.30 10.12 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.41 7.10 7.93 -40.82 -0.32 6.78 16 43 H 0.16 2.43 7.33 -52.49 -0.38 2.04 16 44 H 0.40 1.00 6.97 -40.82 -0.28 0.71 16 45 H 0.41 1.77 8.93 -40.82 -0.36 1.41 16 46 H 0.14 0.48 6.53 -52.49 -0.34 0.13 16 47 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 391.82 15.07 5.90 5.90 Total: -1.00 -35.43 391.82 -8.23 -43.65 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -6.87 Total: 15.25 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -2.74 Total: 4.21 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: 0.33 Total: -68.56 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: 0.16 Total: -17.78 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.43 -8.23 -43.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725234318.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.255 kcal (2) G-P(sol) polarization free energy of solvation -35.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds