Wall clock time and date at job start Tue Mar 31 2020 17:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47223 * 2 1 4 4 C 1.52999 * 109.46945 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46989 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46662 * 55.00238 * 5 4 3 7 7 C 1.52996 * 109.47336 * 174.99994 * 5 4 3 8 8 N 1.46498 * 109.47059 * 175.00083 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47213 * 60.00246 * 13 11 9 15 15 H 1.48502 * 109.47317 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47081 * 299.99875 * 13 11 9 17 17 N 1.46494 * 109.47171 * 295.00630 * 5 4 3 18 18 C 1.34779 * 120.00531 * 84.99693 * 17 5 4 19 19 O 1.21512 * 119.99668 * 0.02562 * 18 17 5 20 20 C 1.48169 * 120.00200 * 179.97438 * 18 17 5 21 21 C 1.39248 * 119.65719 * 179.72725 * 20 18 17 22 22 C 1.39750 * 118.90630 * 179.75336 * 21 20 18 23 23 C 1.48137 * 120.89409 * 180.28272 * 22 21 20 24 24 N 1.34774 * 120.00178 * 180.22897 * 23 22 21 25 25 O 1.21509 * 119.99866 * 0.23241 * 23 22 21 26 26 C 1.39821 * 118.21590 * 0.50766 * 22 21 20 27 27 C 1.38498 * 119.19088 * 359.75181 * 26 22 21 28 28 N 1.31466 * 121.03506 * 359.97438 * 27 26 22 29 29 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47267 * 299.99850 * 1 2 3 31 31 H 1.08995 * 109.47660 * 59.99809 * 1 2 3 32 32 H 1.09001 * 109.47387 * 239.99934 * 2 1 3 33 33 H 1.09002 * 109.47480 * 119.99855 * 2 1 3 34 34 H 1.08997 * 109.46805 * 60.00149 * 3 2 1 35 35 H 1.08995 * 109.46632 * 299.99912 * 3 2 1 36 36 H 1.08997 * 109.47199 * 60.00449 * 4 3 2 37 37 H 1.08995 * 109.47432 * 299.99480 * 4 3 2 38 38 H 1.09004 * 109.47066 * 55.00351 * 7 5 4 39 39 H 1.08994 * 109.46974 * 295.00498 * 7 5 4 40 40 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 41 41 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 42 42 H 0.97009 * 119.99912 * 264.99313 * 17 5 4 43 43 H 1.08001 * 120.54995 * 359.97438 * 21 20 18 44 44 H 0.97003 * 120.00185 * 0.02562 * 24 23 22 45 45 H 0.97005 * 119.99934 * 179.97438 * 24 23 22 46 46 H 1.07996 * 120.39902 * 179.77610 * 26 22 21 47 47 H 1.07990 * 119.47948 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 0.8414 7 6 5.6048 2.8869 0.1264 8 7 6.1030 4.2593 0.0060 9 6 7.4464 4.5101 0.0937 10 1 8.1389 3.6957 0.2472 11 6 7.9180 5.8112 -0.0145 12 7 7.0739 6.8038 -0.2010 13 14 9.7505 6.1533 0.1044 14 1 10.4616 5.4229 -0.9755 15 1 9.9924 7.6112 -0.0410 16 1 10.2544 5.6978 1.4250 17 7 3.6929 3.5393 -1.2522 18 6 2.4756 4.1061 -1.3682 19 8 1.6994 4.0749 -0.4339 20 6 2.0844 4.7684 -2.6346 21 6 0.8228 5.3467 -2.7486 22 6 0.4721 5.9718 -3.9483 23 6 -0.8559 6.6066 -4.1153 24 7 -1.1771 7.2004 -5.2818 25 8 -1.6556 6.5920 -3.2006 26 6 1.4065 5.9777 -4.9884 27 6 2.6377 5.3741 -4.7938 28 7 2.9377 4.7995 -3.6500 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9337 0.9286 -0.8891 37 1 3.9329 0.9289 0.8908 38 1 6.0357 2.2733 -0.6648 39 1 5.8894 2.4808 1.0970 40 1 5.4810 4.9908 -0.1315 41 1 7.4035 7.7129 -0.2771 42 1 4.3127 3.5646 -1.9981 43 1 0.1282 5.3160 -1.9222 44 1 -0.5388 7.2118 -6.0122 45 1 -2.0468 7.6157 -5.3913 46 1 1.1710 6.4475 -5.9319 47 1 3.3631 5.3763 -5.5938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725234318.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:09 Heat of formation + Delta-G solvation = -68.656818 kcal Electronic energy + Delta-G solvation = -28750.497596 eV Core-core repulsion = 24738.785341 eV Total energy + Delta-G solvation = -4011.712255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.99515 -40.85688 -39.81669 -37.91539 -36.26615 -35.27915 -35.07726 -33.64144 -33.02683 -32.45182 -31.48299 -28.75344 -26.46177 -25.93460 -25.21263 -23.76150 -23.14417 -21.91556 -21.79096 -21.24767 -19.73185 -19.13217 -18.43891 -18.08255 -17.50029 -16.88174 -16.82692 -16.54837 -16.34312 -16.09185 -15.86031 -15.79433 -15.27056 -15.24459 -14.99268 -14.91546 -14.67833 -14.40058 -14.12638 -13.78543 -13.52145 -13.17881 -13.08967 -12.86761 -12.75252 -12.52342 -12.16702 -12.03311 -11.89153 -11.84525 -11.67404 -11.42737 -11.41506 -11.26908 -11.18181 -10.93926 -10.80683 -10.63878 -10.38090 -9.94403 -8.99858 -7.91943 -5.22121 -0.63664 -0.28924 1.45617 1.48846 1.52168 1.58038 1.92011 2.00741 2.32720 2.57650 2.79296 3.08154 3.41920 3.52993 3.61115 3.71524 3.76201 3.83732 4.00561 4.06587 4.19465 4.26750 4.30462 4.34438 4.54707 4.57491 4.59499 4.64362 4.79423 4.84056 4.91305 4.93454 4.98618 5.07385 5.13186 5.21395 5.31894 5.38372 5.40150 5.51391 5.55039 5.61081 5.75092 6.26522 6.27637 6.41340 6.72101 7.14054 7.15788 7.34797 8.08273 8.32275 9.30962 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007872 B = 0.003756 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3556.181233 B = 7452.377457 C =10323.471253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.106 4.106 4 C -0.116 4.116 5 C 0.143 3.857 6 H 0.061 0.939 7 C 0.146 3.854 8 N -0.743 5.743 9 C -0.245 4.245 10 H 0.080 0.920 11 C -0.074 4.074 12 N -0.969 5.969 13 Si 0.975 3.025 14 H -0.274 1.274 15 H -0.298 1.298 16 H -0.280 1.280 17 N -0.683 5.683 18 C 0.563 3.437 19 O -0.560 6.560 20 C 0.061 3.939 21 C -0.075 4.075 22 C -0.110 4.110 23 C 0.566 3.434 24 N -0.815 5.815 25 O -0.580 6.580 26 C -0.088 4.088 27 C 0.097 3.903 28 N -0.456 5.456 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.372 0.628 41 H 0.249 0.751 42 H 0.413 0.587 43 H 0.134 0.866 44 H 0.422 0.578 45 H 0.419 0.581 46 H 0.203 0.797 47 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.454 -6.836 -16.183 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.144 4.144 4 C -0.155 4.155 5 C 0.039 3.961 6 H 0.080 0.920 7 C 0.020 3.980 8 N -0.386 5.386 9 C -0.377 4.377 10 H 0.098 0.902 11 C -0.266 4.266 12 N -0.620 5.620 13 Si 0.804 3.196 14 H -0.200 1.200 15 H -0.225 1.225 16 H -0.206 1.206 17 N -0.333 5.333 18 C 0.348 3.652 19 O -0.439 6.439 20 C -0.075 4.075 21 C -0.097 4.097 22 C -0.121 4.121 23 C 0.350 3.650 24 N -0.381 5.381 25 O -0.459 6.459 26 C -0.108 4.108 27 C -0.063 4.063 28 N -0.168 5.168 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.204 0.796 41 H 0.058 0.942 42 H 0.250 0.750 43 H 0.152 0.848 44 H 0.255 0.745 45 H 0.252 0.748 46 H 0.219 0.781 47 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -14.379 -7.431 -14.675 21.848 hybrid contribution 0.121 1.520 -0.267 1.548 sum -14.257 -5.910 -14.942 21.482 Atomic orbital electron populations 1.21743 0.95947 1.01862 1.01155 1.21534 0.95908 0.95828 1.02448 1.21561 0.94809 0.96826 1.01218 1.21916 0.95866 0.93929 1.03759 1.21262 0.94515 0.94320 0.86029 0.92030 1.21111 0.90591 0.86934 0.99398 1.42530 1.04616 1.03739 1.87756 1.19616 0.84973 0.92727 1.40341 0.90201 1.25576 1.01941 0.95628 1.03477 1.69851 1.34816 0.98990 1.58314 0.85190 0.80114 0.76122 0.78157 1.19988 1.22483 1.20646 1.45760 1.15349 1.55139 1.17069 1.18079 0.82386 0.78211 0.86478 1.90760 1.52499 1.60635 1.40054 1.20925 0.91849 1.00642 0.94106 1.22089 0.95813 0.93431 0.98400 1.20356 0.95936 1.00692 0.95101 1.18122 0.85679 0.77927 0.83235 1.43435 1.22287 1.58027 1.14369 1.90847 1.52037 1.60676 1.42383 1.23080 0.92418 0.95596 0.99714 1.23645 0.96426 0.92065 0.94152 1.67472 1.33490 1.15078 1.00746 0.91315 0.93459 0.93888 0.91541 0.91121 0.93610 0.93848 0.90404 0.89295 0.94178 0.94106 0.79572 0.94215 0.74991 0.84824 0.74497 0.74807 0.78050 0.77321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.91 71.98 0.71 -2.55 16 2 C -0.12 -2.69 5.93 30.59 0.18 -2.51 16 3 C -0.11 -3.06 3.82 30.60 0.12 -2.95 16 4 C -0.12 -3.20 4.89 30.60 0.15 -3.05 16 5 C 0.14 5.05 2.41 44.99 0.11 5.16 16 6 H 0.06 2.51 7.58 -2.39 -0.02 2.49 16 7 C 0.15 5.75 5.82 86.38 0.50 6.25 16 8 N -0.74 -37.93 5.43 -343.46 -1.87 -39.80 16 9 C -0.24 -13.59 9.99 84.03 0.84 -12.75 16 10 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 11 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 12 N -0.97 -60.06 13.06 21.65 0.28 -59.78 16 13 Si 0.98 46.03 29.55 68.60 2.03 48.05 16 14 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 15 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 16 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 17 N -0.68 -24.39 4.46 -445.11 -1.98 -26.37 16 18 C 0.56 21.01 6.38 86.88 0.55 21.56 16 19 O -0.56 -23.40 13.46 -3.75 -0.05 -23.45 16 20 C 0.06 1.98 6.75 41.90 0.28 2.26 16 21 C -0.08 -2.26 9.20 22.88 0.21 -2.05 16 22 C -0.11 -2.32 5.91 -19.90 -0.12 -2.43 16 23 C 0.57 11.59 8.07 86.87 0.70 12.29 16 24 N -0.82 -6.64 8.83 -175.41 -1.55 -8.19 16 25 O -0.58 -18.05 17.28 -3.74 -0.06 -18.11 16 26 C -0.09 -1.08 9.62 22.72 0.22 -0.86 16 27 C 0.10 1.65 11.17 84.81 0.95 2.60 16 28 N -0.46 -12.56 9.51 -185.08 -1.76 -14.32 16 29 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.05 1.50 7.85 -2.39 -0.02 1.48 16 35 H 0.04 1.42 5.64 -2.39 -0.01 1.40 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.09 2.16 8.14 -2.39 -0.02 2.15 16 38 H 0.04 1.48 8.14 -2.38 -0.02 1.47 16 39 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.37 20.89 7.33 -92.71 -0.68 20.21 16 41 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 42 H 0.41 14.71 7.93 -92.70 -0.73 13.98 16 43 H 0.13 4.63 7.33 -2.91 -0.02 4.60 16 44 H 0.42 -0.01 6.97 -92.71 -0.65 -0.65 16 45 H 0.42 2.44 8.93 -92.70 -0.83 1.62 16 46 H 0.20 -0.02 6.53 -2.91 -0.02 -0.04 16 47 H 0.21 1.82 8.06 -2.92 -0.02 1.80 16 Total: -1.00 -82.71 391.82 -0.94 -83.65 By element: Atomic # 1 Polarization: 42.98 SS G_CDS: -1.85 Total: 41.13 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 5.88 Total: 17.19 kcal Atomic # 7 Polarization: -141.59 SS G_CDS: -6.88 Total: -148.47 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -0.12 Total: -41.56 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -82.71 -0.94 -83.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725234318.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.993 kcal (2) G-P(sol) polarization free energy of solvation -82.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds