Wall clock time and date at job start Tue Mar 31 2020 18:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47172 * 2 1 4 4 C 1.52996 * 109.47309 * 120.00086 * 2 1 3 5 5 H 1.09000 * 109.47521 * 60.00160 * 4 2 1 6 6 C 1.53003 * 109.47332 * 180.02562 * 4 2 1 7 7 C 1.53002 * 109.47269 * 185.00423 * 6 4 2 8 8 N 1.46498 * 109.47272 * 180.02562 * 7 6 4 9 9 C 1.34773 * 120.00043 * 179.97438 * 8 7 6 10 10 O 1.21523 * 120.00157 * 359.97438 * 9 8 7 11 11 C 1.48008 * 119.99899 * 179.97438 * 9 8 7 12 12 C 1.39874 * 120.46515 * 179.97438 * 11 9 8 13 13 C 1.38447 * 118.35646 * 179.97438 * 12 11 9 14 14 C 1.39299 * 119.19398 * 0.02562 * 13 12 11 15 15 C 1.48341 * 119.56936 * 179.97438 * 14 13 12 16 16 N 1.34779 * 119.99401 * 179.97438 * 15 14 13 17 17 O 1.21492 * 119.99903 * 359.97438 * 15 14 13 18 18 N 1.32713 * 120.85416 * 359.97438 * 14 13 12 19 19 C 1.31414 * 121.80365 * 359.72886 * 18 14 13 20 20 N 1.46505 * 109.47130 * 300.00074 * 4 2 1 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 4 2 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 4 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 4 24 24 N 1.31617 * 119.99873 * 180.27450 * 23 21 20 25 25 Si 1.86800 * 120.00209 * 0.27770 * 23 21 20 26 26 H 1.48498 * 109.47118 * 89.99559 * 25 23 21 27 27 H 1.48499 * 109.47134 * 210.00079 * 25 23 21 28 28 H 1.48507 * 109.46904 * 329.99901 * 25 23 21 29 29 H 1.08994 * 109.46999 * 59.99901 * 1 2 3 30 30 H 1.09000 * 109.46698 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47086 * 299.99896 * 1 2 3 32 32 H 1.08998 * 109.47497 * 240.00304 * 2 1 3 33 33 H 1.08998 * 109.47308 * 180.02562 * 3 2 1 34 34 H 1.08992 * 109.47225 * 300.00492 * 3 2 1 35 35 H 1.09003 * 109.47030 * 60.00070 * 3 2 1 36 36 H 1.09000 * 109.46805 * 304.99883 * 6 4 2 37 37 H 1.08992 * 109.47408 * 64.99820 * 6 4 2 38 38 H 1.09000 * 109.46766 * 299.99484 * 7 6 4 39 39 H 1.08992 * 109.47398 * 59.99391 * 7 6 4 40 40 H 0.97004 * 119.99849 * 359.97438 * 8 7 6 41 41 H 1.08002 * 120.81755 * 359.95532 * 12 11 9 42 42 H 1.08007 * 120.39760 * 179.97438 * 13 12 11 43 43 H 0.96991 * 120.00046 * 359.97438 * 16 15 14 44 44 H 0.97003 * 119.99388 * 179.97438 * 16 15 14 45 45 H 1.08005 * 119.64115 * 180.26695 * 19 18 14 46 46 H 0.97000 * 119.99792 * 264.99726 * 20 4 2 47 47 H 0.97000 * 120.00553 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6768 -1.7489 1.2492 6 6 3.5700 -0.7207 1.2495 7 6 4.0801 -1.5482 2.4311 8 7 5.5451 -1.5471 2.4317 9 6 6.2190 -2.2160 3.3881 10 8 5.6115 -2.8197 4.2503 11 6 7.6991 -2.2154 3.3885 12 6 8.4083 -2.9060 4.3767 13 6 9.7919 -2.8767 4.3349 14 6 10.4261 -2.1658 3.3186 15 6 11.9081 -2.1283 3.2663 16 7 12.5306 -1.4436 2.2864 17 8 12.5606 -2.7149 4.1066 18 7 9.7215 -1.5216 2.3967 19 6 8.4074 -1.5298 2.3982 20 7 1.5517 -0.0306 2.4454 21 6 0.3102 -0.3211 2.9447 22 1 -0.3089 -1.0596 2.4570 23 6 -0.1502 0.3291 4.0815 24 7 -1.3413 0.0460 4.5646 25 14 0.9207 1.6059 4.9256 26 1 0.6418 2.9454 4.3486 27 1 0.6202 1.6209 6.3797 28 1 2.3516 1.2662 4.7193 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 3.9337 -1.1547 0.3181 37 1 3.9330 0.3031 1.3393 38 1 3.7165 -1.1141 3.3624 39 1 3.7172 -2.5719 2.3413 40 1 6.0301 -1.0650 1.7438 41 1 7.8895 -3.4483 5.1533 42 1 10.3724 -3.3980 5.0818 43 1 12.0095 -0.9756 1.6154 44 1 13.4997 -1.4188 2.2524 45 1 7.8690 -0.9970 1.6284 46 1 2.1078 0.6323 2.8837 47 1 -1.6633 0.5006 5.3588 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725447130.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:56 Heat of formation + Delta-G solvation = -62.820491 kcal Electronic energy + Delta-G solvation = -28020.891584 eV Core-core repulsion = 24009.432411 eV Total energy + Delta-G solvation = -4011.459173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.01078 -40.76173 -39.65366 -39.06610 -36.20939 -34.99972 -34.72632 -33.58172 -33.25073 -32.52771 -31.30617 -27.93579 -27.48233 -26.11522 -24.82141 -24.53440 -22.84928 -22.52197 -21.66570 -20.42006 -19.62288 -19.37898 -18.80539 -18.32271 -17.41023 -16.98392 -16.61086 -16.47594 -16.20547 -16.16945 -15.88556 -15.73926 -15.44027 -15.16151 -14.89977 -14.66490 -14.43041 -14.37654 -14.26260 -14.05665 -13.82579 -13.31792 -12.96281 -12.75010 -12.57808 -12.44318 -12.07942 -12.02424 -11.94380 -11.73764 -11.69068 -11.49271 -11.20846 -11.18877 -11.16790 -10.83487 -10.80808 -10.73889 -10.50389 -10.13149 -9.16937 -7.92694 -5.21450 -0.95202 -0.01037 1.23270 1.37478 1.41000 1.47413 1.92805 1.95653 2.21310 2.53945 2.70383 2.99167 3.39448 3.47665 3.62473 3.70820 3.74977 3.79130 3.94089 3.98154 4.15581 4.30518 4.41970 4.45632 4.49740 4.68179 4.77141 4.82283 4.84010 4.94078 5.01853 5.06976 5.17417 5.21139 5.23217 5.33489 5.37526 5.43199 5.47765 5.68088 5.74017 5.85479 5.93490 6.16907 6.31436 6.41771 6.50130 7.09042 7.15524 7.19685 7.97183 8.13725 9.29482 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016205 B = 0.002333 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.430816 B =11998.294817 C =12831.392808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 C -0.137 4.137 4 C 0.178 3.822 5 H 0.041 0.959 6 C -0.123 4.123 7 C 0.126 3.874 8 N -0.700 5.700 9 C 0.554 3.446 10 O -0.576 6.576 11 C -0.165 4.165 12 C -0.026 4.026 13 C -0.118 4.118 14 C 0.086 3.914 15 C 0.575 3.425 16 N -0.812 5.812 17 O -0.570 6.570 18 N -0.456 5.456 19 C 0.145 3.855 20 N -0.743 5.743 21 C -0.194 4.194 22 H 0.062 0.938 23 C -0.072 4.072 24 N -0.990 5.990 25 Si 0.942 3.058 26 H -0.281 1.281 27 H -0.310 1.310 28 H -0.253 1.253 29 H 0.049 0.951 30 H 0.031 0.969 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.031 0.969 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.043 0.957 39 H 0.055 0.945 40 H 0.419 0.581 41 H 0.154 0.846 42 H 0.161 0.839 43 H 0.423 0.577 44 H 0.417 0.583 45 H 0.205 0.795 46 H 0.363 0.637 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.880 -0.243 -13.081 30.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C -0.194 4.194 4 C 0.070 3.930 5 H 0.059 0.941 6 C -0.161 4.161 7 C 0.003 3.997 8 N -0.353 5.353 9 C 0.341 3.659 10 O -0.456 6.456 11 C -0.170 4.170 12 C -0.052 4.052 13 C -0.139 4.139 14 C -0.052 4.052 15 C 0.358 3.642 16 N -0.375 5.375 17 O -0.449 6.449 18 N -0.167 5.167 19 C -0.016 4.016 20 N -0.386 5.386 21 C -0.325 4.325 22 H 0.080 0.920 23 C -0.262 4.262 24 N -0.642 5.642 25 Si 0.771 3.229 26 H -0.208 1.208 27 H -0.238 1.238 28 H -0.178 1.178 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.130 0.870 37 H 0.106 0.894 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.258 0.742 41 H 0.171 0.829 42 H 0.179 0.821 43 H 0.255 0.745 44 H 0.250 0.750 45 H 0.222 0.778 46 H 0.196 0.804 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 28.012 -0.721 -12.549 30.703 hybrid contribution -0.588 0.576 1.401 1.625 sum 27.423 -0.145 -11.148 29.603 Atomic orbital electron populations 1.21788 0.97113 1.00104 1.00792 1.21594 0.94909 0.97384 0.98379 1.21748 1.01360 0.95693 1.00632 1.20454 0.92102 0.94615 0.85837 0.94123 1.22039 0.94881 1.01127 0.98049 1.21265 0.78198 1.00484 0.99791 1.45755 1.07524 1.52115 1.29860 1.18401 0.87179 0.78909 0.81454 1.90826 1.70567 1.45346 1.38869 1.21154 0.93375 1.02854 0.99643 1.21901 0.93446 0.93492 0.96410 1.22200 0.94304 0.98354 0.99007 1.21362 0.94466 0.96146 0.93194 1.17933 0.86086 0.78644 0.81570 1.43511 1.12091 1.52345 1.29595 1.90839 1.66588 1.46554 1.40899 1.67588 1.08545 1.17140 1.23384 1.23435 0.89050 0.93376 0.95709 1.42791 1.16448 1.48200 1.31159 1.18966 0.92120 1.16058 1.05363 0.92024 1.25346 0.97903 1.03072 0.99874 1.69866 1.20427 1.47993 1.25947 0.85591 0.79968 0.80164 0.77139 1.20767 1.23752 1.17824 0.93215 0.95000 0.93677 0.89547 0.90665 0.92879 0.94934 0.87047 0.89434 0.93827 0.92617 0.74217 0.82870 0.82123 0.74475 0.75026 0.77836 0.80402 0.93990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 8.26 71.98 0.59 -4.25 16 2 C -0.10 -2.79 2.80 -10.79 -0.03 -2.82 16 3 C -0.14 -3.38 8.68 71.98 0.63 -2.75 16 4 C 0.18 5.51 2.19 44.99 0.10 5.60 16 5 H 0.04 1.41 8.08 -2.39 -0.02 1.39 16 6 C -0.12 -2.53 4.36 30.60 0.13 -2.39 16 7 C 0.13 3.26 5.56 86.38 0.48 3.74 16 8 N -0.70 -12.98 5.51 -465.84 -2.57 -15.55 16 9 C 0.55 13.24 7.79 86.84 0.68 13.91 16 10 O -0.58 -19.96 16.41 -3.79 -0.06 -20.03 16 11 C -0.16 -2.89 5.90 -19.93 -0.12 -3.00 16 12 C -0.03 -0.47 9.71 22.72 0.22 -0.25 16 13 C -0.12 -1.95 9.62 22.57 0.22 -1.73 16 14 C 0.09 1.37 6.75 41.96 0.28 1.65 16 15 C 0.57 9.37 8.09 86.93 0.70 10.08 16 16 N -0.81 -6.66 8.86 -175.26 -1.55 -8.21 16 17 O -0.57 -13.36 17.15 -3.69 -0.06 -13.43 16 18 N -0.46 -5.85 9.52 -183.90 -1.75 -7.60 16 19 C 0.15 1.67 10.71 85.12 0.91 2.58 16 20 N -0.74 -30.62 3.49 -322.93 -1.13 -31.75 16 21 C -0.19 -10.30 8.05 84.04 0.68 -9.62 16 22 H 0.06 3.63 7.63 -2.91 -0.02 3.61 16 23 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 24 N -0.99 -63.56 13.97 21.65 0.30 -63.26 16 25 Si 0.94 45.56 27.74 68.60 1.90 47.46 16 26 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 27 H -0.31 -15.77 7.11 99.48 0.71 -15.07 16 28 H -0.25 -11.02 6.51 99.48 0.65 -10.37 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.04 1.96 6.01 -2.39 -0.01 1.94 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.07 1.38 6.55 -2.39 -0.02 1.36 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.03 1.00 7.60 -2.39 -0.02 0.98 16 36 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.09 1.56 6.71 -2.39 -0.02 1.54 16 38 H 0.04 1.50 7.75 -2.39 -0.02 1.48 16 39 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 40 H 0.42 3.78 6.53 -92.71 -0.61 3.17 16 41 H 0.15 2.85 7.73 -2.91 -0.02 2.83 16 42 H 0.16 2.47 7.63 -2.91 -0.02 2.44 16 43 H 0.42 1.93 8.15 -92.72 -0.76 1.18 16 44 H 0.42 2.02 8.93 -92.71 -0.83 1.19 16 45 H 0.21 0.67 6.41 -2.91 -0.02 0.65 16 46 H 0.36 14.69 5.66 -92.71 -0.52 14.16 16 47 H 0.25 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -81.15 385.86 -0.71 -81.85 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -1.73 Total: 23.44 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 5.94 Total: 7.05 kcal Atomic # 7 Polarization: -119.67 SS G_CDS: -6.70 Total: -126.37 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.13 Total: -33.45 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.90 Total: 47.46 kcal Total: -81.15 -0.71 -81.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725447130.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.034 kcal (2) G-P(sol) polarization free energy of solvation -81.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds