Wall clock time and date at job start Tue Mar 31 2020 17:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46967 * 2 1 4 4 C 1.52997 * 109.47223 * 240.00045 * 2 1 3 5 5 C 1.53000 * 109.46624 * 119.99787 * 2 1 3 6 6 H 1.08997 * 109.47488 * 300.00102 * 5 2 1 7 7 C 1.53004 * 109.46624 * 179.97438 * 5 2 1 8 8 N 1.46504 * 109.46936 * 185.00174 * 7 5 2 9 9 C 1.36929 * 119.99912 * 180.02562 * 8 7 5 10 10 H 1.08002 * 120.00475 * 359.97438 * 9 8 7 11 11 C 1.38818 * 120.00005 * 180.02562 * 9 8 7 12 12 N 1.31615 * 120.00078 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00083 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47500 * 59.99801 * 13 11 9 15 15 H 1.48502 * 109.47440 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46983 * 299.99922 * 13 11 9 17 17 N 1.46501 * 109.47059 * 60.00297 * 5 2 1 18 18 C 1.34777 * 120.00180 * 274.99438 * 17 5 2 19 19 O 1.21531 * 119.99805 * 0.02562 * 18 17 5 20 20 C 1.47999 * 120.00075 * 179.97438 * 18 17 5 21 21 C 1.39872 * 120.46076 * 179.97438 * 20 18 17 22 22 C 1.38454 * 118.35544 * 180.02562 * 21 20 18 23 23 C 1.39295 * 119.19150 * 0.02562 * 22 21 20 24 24 C 1.48332 * 119.57167 * 180.02562 * 23 22 21 25 25 N 1.34784 * 120.00234 * 179.97438 * 24 23 22 26 26 O 1.21494 * 120.00354 * 359.97438 * 24 23 22 27 27 N 1.32714 * 120.85766 * 359.97438 * 23 22 21 28 28 C 1.31415 * 121.80348 * 0.02562 * 27 23 22 29 29 H 1.08997 * 109.47271 * 299.99978 * 1 2 3 30 30 H 1.09007 * 109.46867 * 60.00234 * 1 2 3 31 31 H 1.08996 * 109.47102 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47062 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47314 * 299.99655 * 3 2 1 34 34 H 1.09004 * 109.47447 * 59.99744 * 3 2 1 35 35 H 1.09001 * 109.46760 * 300.00042 * 4 2 1 36 36 H 1.08998 * 109.47294 * 60.00200 * 4 2 1 37 37 H 1.09004 * 109.47132 * 180.02562 * 4 2 1 38 38 H 1.08995 * 109.47388 * 305.00036 * 7 5 2 39 39 H 1.09002 * 109.47168 * 65.00245 * 7 5 2 40 40 H 0.97002 * 119.99791 * 0.02562 * 8 7 5 41 41 H 0.96997 * 120.00558 * 179.97438 * 12 11 9 42 42 H 0.97003 * 120.00195 * 95.00006 * 17 5 2 43 43 H 1.07996 * 120.82109 * 0.02562 * 21 20 18 44 44 H 1.08003 * 120.39925 * 180.02562 * 22 21 20 45 45 H 0.97003 * 119.99836 * 359.97438 * 25 24 23 46 46 H 0.96995 * 120.00249 * 180.02562 * 25 24 23 47 47 H 1.08003 * 119.64572 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0399 -0.7212 1.2493 6 1 1.6766 -0.2074 2.1392 7 6 3.5699 -0.7218 1.2490 8 7 4.0582 -1.5140 2.3805 9 6 5.4044 -1.6576 2.5855 10 1 6.1064 -1.1872 1.9129 11 6 5.8671 -2.4087 3.6573 12 7 5.0118 -2.9825 4.4767 13 14 7.7036 -2.6052 3.9366 14 1 8.3187 -1.2694 4.1426 15 1 7.9344 -3.4465 5.1383 16 1 8.3178 -3.2554 2.7512 17 7 1.5516 -2.1024 1.2493 18 6 0.3296 -2.3852 1.7425 19 8 -0.3674 -1.4943 2.1869 20 6 -0.1640 -3.7805 1.7420 21 6 -1.4303 -4.0849 2.2519 22 6 -1.8481 -5.4047 2.2304 23 6 -0.9998 -6.3773 1.7062 24 6 -1.4390 -7.7939 1.6785 25 7 -0.6253 -8.7420 1.1728 26 8 -2.5322 -8.0996 2.1115 27 7 0.1960 -6.0530 1.2305 28 6 0.6290 -4.8122 1.2330 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6768 -0.2074 -2.1392 37 1 3.1301 -0.7216 -1.2490 38 1 3.9330 -1.1564 0.3177 39 1 3.9337 0.3019 1.3383 40 1 3.4278 -1.9369 2.9844 41 1 5.3350 -3.5077 5.2255 42 1 2.1077 -2.8135 0.8943 43 1 -2.0665 -3.3096 2.6526 44 1 -2.8198 -5.6768 2.6153 45 1 0.2473 -8.4979 0.8267 46 1 -0.9127 -9.6682 1.1543 47 1 1.6085 -4.5875 0.8373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725759352.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:49 Heat of formation + Delta-G solvation = -32.491885 kcal Electronic energy + Delta-G solvation = -29291.134471 eV Core-core repulsion = 25280.990445 eV Total energy + Delta-G solvation = -4010.144026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.05015 -40.01812 -38.84416 -37.38021 -34.51167 -34.10028 -33.53582 -32.58593 -31.72872 -30.93984 -27.87014 -27.18736 -26.93805 -25.48724 -23.89194 -23.69484 -21.89932 -21.42678 -20.54436 -18.80938 -18.49546 -17.88537 -17.41368 -16.87676 -16.45124 -15.68681 -15.58228 -15.28515 -15.21219 -14.87122 -14.60340 -14.09963 -13.96863 -13.86684 -13.64101 -13.34875 -13.28097 -13.19238 -12.86688 -12.72784 -12.22712 -11.99520 -11.85862 -11.43672 -11.28095 -11.16431 -10.84285 -10.80032 -10.71234 -10.60177 -10.30160 -10.18440 -10.16842 -10.00531 -9.97338 -9.79363 -9.62175 -9.45013 -8.94721 -8.71745 -7.01035 -5.83034 -3.13125 0.08891 0.96106 2.26075 3.06047 3.07537 3.23795 3.39357 3.44424 3.45379 3.73526 3.90091 4.51063 4.55803 4.56301 4.69707 4.77744 4.88089 4.94946 5.00444 5.10728 5.38922 5.48776 5.50488 5.62706 5.71510 5.73273 5.81284 5.84266 5.87179 5.97777 6.02292 6.07100 6.11012 6.19696 6.24850 6.38702 6.40397 6.42442 6.46124 6.56694 6.65935 6.84943 6.98638 7.42551 7.62760 7.66076 7.94215 8.30815 8.34640 9.46491 10.01675 10.36754 11.38978 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008300 B = 0.003892 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3372.521616 B = 7191.720438 C = 9723.244313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.076 4.076 3 C -0.141 4.141 4 C -0.142 4.142 5 C 0.149 3.851 6 H 0.090 0.910 7 C 0.141 3.859 8 N -0.731 5.731 9 C -0.245 4.245 10 H 0.070 0.930 11 C -0.009 4.009 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.698 5.698 18 C 0.561 3.439 19 O -0.531 6.531 20 C -0.153 4.153 21 C -0.024 4.024 22 C -0.118 4.118 23 C 0.087 3.913 24 C 0.579 3.421 25 N -0.834 5.834 26 O -0.536 6.536 27 N -0.460 5.460 28 C 0.138 3.862 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.030 0.970 39 H 0.037 0.963 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.403 0.597 43 H 0.156 0.844 44 H 0.154 0.846 45 H 0.414 0.586 46 H 0.405 0.595 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.488 -3.037 -11.494 16.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.078 4.078 3 C -0.199 4.199 4 C -0.200 4.200 5 C 0.045 3.955 6 H 0.108 0.892 7 C 0.013 3.987 8 N -0.376 5.376 9 C -0.376 4.376 10 H 0.088 0.912 11 C -0.206 4.206 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.212 1.212 17 N -0.348 5.348 18 C 0.346 3.654 19 O -0.408 6.408 20 C -0.158 4.158 21 C -0.050 4.050 22 C -0.139 4.139 23 C -0.051 4.051 24 C 0.363 3.637 25 N -0.397 5.397 26 O -0.412 6.412 27 N -0.171 5.171 28 C -0.023 4.023 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.239 0.761 43 H 0.174 0.826 44 H 0.172 0.828 45 H 0.245 0.755 46 H 0.236 0.764 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.996 -3.094 -11.196 16.697 hybrid contribution 1.071 -0.253 0.478 1.200 sum -10.924 -3.346 -10.718 15.665 Atomic orbital electron populations 1.21895 0.94060 1.01687 1.01113 1.20901 0.96072 0.95641 0.95161 1.21887 1.01619 0.94784 1.01581 1.21923 1.01594 0.99953 0.96481 1.21356 0.95214 0.80979 0.97989 0.89243 1.21113 0.89029 0.96190 0.92353 1.42350 1.04891 1.60332 1.30067 1.19146 0.83266 1.26338 1.08818 0.91198 1.24733 0.97556 1.00427 0.97852 1.69645 1.32718 1.37790 1.17669 0.86288 0.85205 0.77558 0.77213 1.21263 1.21716 1.21237 1.45860 1.16471 1.10807 1.61678 1.17868 0.82074 0.87153 0.78275 1.90772 1.56549 1.47131 1.46397 1.21335 0.96616 0.95606 1.02238 1.21785 0.94207 0.96503 0.92547 1.22101 1.01464 0.92190 0.98151 1.21213 0.91357 0.94512 0.98019 1.17890 0.84036 0.84635 0.77187 1.43642 1.21538 1.10508 1.63994 1.90829 1.21228 1.81979 1.47202 1.67505 1.13589 1.21203 1.14811 1.23015 0.98983 0.86678 0.93588 0.91912 0.93887 0.93062 0.91830 0.92831 0.92511 0.92949 0.93104 0.91791 0.95265 0.94539 0.78093 0.93405 0.76113 0.82620 0.82799 0.75540 0.76382 0.81353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 6.99 37.16 0.26 -1.42 16 2 C -0.08 -0.96 0.62 -154.51 -0.10 -1.05 16 3 C -0.14 -1.66 8.12 37.16 0.30 -1.36 16 4 C -0.14 -1.61 7.97 37.16 0.30 -1.31 16 5 C 0.15 2.28 1.69 -67.93 -0.11 2.17 16 6 H 0.09 1.59 7.58 -51.93 -0.39 1.20 16 7 C 0.14 2.52 5.10 -4.04 -0.02 2.50 16 8 N -0.73 -17.05 5.43 -59.91 -0.33 -17.37 16 9 C -0.24 -6.45 9.99 -15.06 -0.15 -6.60 16 10 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 11 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 12 N -0.93 -27.15 13.06 55.49 0.72 -26.42 16 13 Si 0.91 21.66 29.55 -169.99 -5.02 16.63 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 N -0.70 -10.03 3.59 -54.70 -0.20 -10.22 16 18 C 0.56 8.33 6.14 -12.26 -0.08 8.26 16 19 O -0.53 -9.06 13.53 5.34 0.07 -8.99 16 20 C -0.15 -1.99 5.90 -104.73 -0.62 -2.60 16 21 C -0.02 -0.28 9.71 -38.89 -0.38 -0.66 16 22 C -0.12 -1.35 9.62 -39.11 -0.38 -1.73 16 23 C 0.09 1.06 6.75 -82.94 -0.56 0.50 16 24 C 0.58 6.87 8.09 -12.10 -0.10 6.77 16 25 N -0.83 -6.93 8.86 30.64 0.27 -6.66 16 26 O -0.54 -7.78 17.15 5.37 0.09 -7.69 16 27 N -0.46 -5.56 9.52 -9.48 -0.09 -5.65 16 28 C 0.14 1.68 10.71 -17.17 -0.18 1.50 16 29 H 0.06 0.90 7.53 -51.93 -0.39 0.51 16 30 H 0.04 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.05 0.70 5.78 -51.93 -0.30 0.40 16 32 H 0.06 0.76 6.54 -51.93 -0.34 0.42 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.58 7.60 -51.93 -0.39 0.18 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.74 6.32 -51.93 -0.33 0.42 16 38 H 0.03 0.51 6.17 -51.93 -0.32 0.19 16 39 H 0.04 0.67 6.71 -51.93 -0.35 0.32 16 40 H 0.39 9.66 7.33 -40.82 -0.30 9.36 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.40 5.43 6.66 -40.82 -0.27 5.15 16 43 H 0.16 1.69 7.73 -52.49 -0.41 1.29 16 44 H 0.15 1.56 7.63 -52.48 -0.40 1.16 16 45 H 0.41 3.00 8.15 -40.82 -0.33 2.67 16 46 H 0.41 2.54 8.93 -40.82 -0.36 2.17 16 47 H 0.17 1.80 6.41 -52.48 -0.34 1.46 16 LS Contribution 380.70 15.07 5.74 5.74 Total: -1.00 -32.46 380.70 -7.11 -39.57 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -6.46 Total: 16.47 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -1.91 Total: 4.61 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: 0.38 Total: -66.33 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.16 Total: -16.68 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.46 -7.11 -39.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725759352.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.074 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds