Wall clock time and date at job start Tue Mar 31 2020 17:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46967 * 2 1 4 4 C 1.52997 * 109.47223 * 240.00045 * 2 1 3 5 5 C 1.53000 * 109.46624 * 119.99787 * 2 1 3 6 6 H 1.08997 * 109.47488 * 300.00102 * 5 2 1 7 7 C 1.53004 * 109.46624 * 179.97438 * 5 2 1 8 8 N 1.46504 * 109.46936 * 185.00174 * 7 5 2 9 9 C 1.36929 * 119.99912 * 180.02562 * 8 7 5 10 10 H 1.08002 * 120.00475 * 359.97438 * 9 8 7 11 11 C 1.38818 * 120.00005 * 180.02562 * 9 8 7 12 12 N 1.31615 * 120.00078 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00083 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47500 * 59.99801 * 13 11 9 15 15 H 1.48502 * 109.47440 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46983 * 299.99922 * 13 11 9 17 17 N 1.46501 * 109.47059 * 60.00297 * 5 2 1 18 18 C 1.34777 * 120.00180 * 274.99438 * 17 5 2 19 19 O 1.21531 * 119.99805 * 0.02562 * 18 17 5 20 20 C 1.47999 * 120.00075 * 179.97438 * 18 17 5 21 21 C 1.39872 * 120.46076 * 179.97438 * 20 18 17 22 22 C 1.38454 * 118.35544 * 180.02562 * 21 20 18 23 23 C 1.39295 * 119.19150 * 0.02562 * 22 21 20 24 24 C 1.48332 * 119.57167 * 180.02562 * 23 22 21 25 25 N 1.34784 * 120.00234 * 179.97438 * 24 23 22 26 26 O 1.21494 * 120.00354 * 359.97438 * 24 23 22 27 27 N 1.32714 * 120.85766 * 359.97438 * 23 22 21 28 28 C 1.31415 * 121.80348 * 0.02562 * 27 23 22 29 29 H 1.08997 * 109.47271 * 299.99978 * 1 2 3 30 30 H 1.09007 * 109.46867 * 60.00234 * 1 2 3 31 31 H 1.08996 * 109.47102 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47062 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47314 * 299.99655 * 3 2 1 34 34 H 1.09004 * 109.47447 * 59.99744 * 3 2 1 35 35 H 1.09001 * 109.46760 * 300.00042 * 4 2 1 36 36 H 1.08998 * 109.47294 * 60.00200 * 4 2 1 37 37 H 1.09004 * 109.47132 * 180.02562 * 4 2 1 38 38 H 1.08995 * 109.47388 * 305.00036 * 7 5 2 39 39 H 1.09002 * 109.47168 * 65.00245 * 7 5 2 40 40 H 0.97002 * 119.99791 * 0.02562 * 8 7 5 41 41 H 0.96997 * 120.00558 * 179.97438 * 12 11 9 42 42 H 0.97003 * 120.00195 * 95.00006 * 17 5 2 43 43 H 1.07996 * 120.82109 * 0.02562 * 21 20 18 44 44 H 1.08003 * 120.39925 * 180.02562 * 22 21 20 45 45 H 0.97003 * 119.99836 * 359.97438 * 25 24 23 46 46 H 0.96995 * 120.00249 * 180.02562 * 25 24 23 47 47 H 1.08003 * 119.64572 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0399 -0.7212 1.2493 6 1 1.6766 -0.2074 2.1392 7 6 3.5699 -0.7218 1.2490 8 7 4.0582 -1.5140 2.3805 9 6 5.4044 -1.6576 2.5855 10 1 6.1064 -1.1872 1.9129 11 6 5.8671 -2.4087 3.6573 12 7 5.0118 -2.9825 4.4767 13 14 7.7036 -2.6052 3.9366 14 1 8.3187 -1.2694 4.1426 15 1 7.9344 -3.4465 5.1383 16 1 8.3178 -3.2554 2.7512 17 7 1.5516 -2.1024 1.2493 18 6 0.3296 -2.3852 1.7425 19 8 -0.3674 -1.4943 2.1869 20 6 -0.1640 -3.7805 1.7420 21 6 -1.4303 -4.0849 2.2519 22 6 -1.8481 -5.4047 2.2304 23 6 -0.9998 -6.3773 1.7062 24 6 -1.4390 -7.7939 1.6785 25 7 -0.6253 -8.7420 1.1728 26 8 -2.5322 -8.0996 2.1115 27 7 0.1960 -6.0530 1.2305 28 6 0.6290 -4.8122 1.2330 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6768 -0.2074 -2.1392 37 1 3.1301 -0.7216 -1.2490 38 1 3.9330 -1.1564 0.3177 39 1 3.9337 0.3019 1.3383 40 1 3.4278 -1.9369 2.9844 41 1 5.3350 -3.5077 5.2255 42 1 2.1077 -2.8135 0.8943 43 1 -2.0665 -3.3096 2.6526 44 1 -2.8198 -5.6768 2.6153 45 1 0.2473 -8.4979 0.8267 46 1 -0.9127 -9.6682 1.1543 47 1 1.6085 -4.5875 0.8373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725759352.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:48 Heat of formation + Delta-G solvation = -56.877100 kcal Electronic energy + Delta-G solvation = -29292.191893 eV Core-core repulsion = 25280.990445 eV Total energy + Delta-G solvation = -4011.201448 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.07629 -41.11727 -39.83475 -38.57317 -36.17091 -34.99220 -34.81321 -33.53509 -33.14658 -32.37589 -29.36326 -28.12153 -27.96588 -26.65168 -25.46752 -24.77851 -23.24182 -22.59594 -21.61400 -19.91730 -19.57328 -19.17142 -18.66068 -18.14524 -17.45091 -16.97125 -16.72829 -16.46238 -16.21751 -16.14977 -15.79490 -15.42611 -15.33775 -14.90608 -14.83540 -14.75134 -14.34265 -14.30322 -14.13880 -13.91767 -13.57684 -13.03955 -13.00040 -12.90762 -12.69505 -12.51355 -12.34903 -12.21112 -12.01653 -11.74175 -11.69215 -11.62616 -11.30042 -11.26691 -11.13597 -10.89377 -10.80931 -10.68286 -10.43202 -9.92150 -8.95805 -7.91222 -5.19858 -0.90468 0.01609 1.26539 1.50696 1.52367 1.58305 1.97001 2.07546 2.23280 2.58567 2.73631 2.99950 3.43410 3.53387 3.65033 3.66879 3.75154 3.81491 3.89657 4.00846 4.06944 4.27712 4.35951 4.46889 4.51566 4.66241 4.78000 4.85195 4.86169 4.88282 4.93457 4.99775 5.09715 5.12016 5.18769 5.25633 5.27238 5.34378 5.43891 5.54098 5.58006 5.64001 5.73260 6.16383 6.29202 6.47046 6.52027 7.13383 7.14557 7.37359 8.11329 8.34552 9.31317 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008300 B = 0.003892 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3372.521616 B = 7191.720438 C = 9723.244313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.139 4.139 5 C 0.159 3.841 6 H 0.060 0.940 7 C 0.143 3.857 8 N -0.742 5.742 9 C -0.241 4.241 10 H 0.079 0.921 11 C -0.069 4.069 12 N -0.967 5.967 13 Si 0.968 3.032 14 H -0.282 1.282 15 H -0.301 1.301 16 H -0.275 1.275 17 N -0.694 5.694 18 C 0.562 3.438 19 O -0.557 6.557 20 C -0.164 4.164 21 C -0.022 4.022 22 C -0.116 4.116 23 C 0.080 3.920 24 C 0.577 3.423 25 N -0.813 5.813 26 O -0.567 6.567 27 N -0.459 5.459 28 C 0.138 3.862 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.038 0.962 40 H 0.373 0.627 41 H 0.249 0.751 42 H 0.408 0.592 43 H 0.163 0.837 44 H 0.167 0.833 45 H 0.421 0.579 46 H 0.417 0.583 47 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.980 -3.153 -13.415 17.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.071 4.071 3 C -0.198 4.198 4 C -0.196 4.196 5 C 0.054 3.946 6 H 0.078 0.922 7 C 0.017 3.983 8 N -0.385 5.385 9 C -0.373 4.373 10 H 0.097 0.903 11 C -0.262 4.262 12 N -0.618 5.618 13 Si 0.797 3.203 14 H -0.208 1.208 15 H -0.228 1.228 16 H -0.201 1.201 17 N -0.344 5.344 18 C 0.348 3.652 19 O -0.437 6.437 20 C -0.170 4.170 21 C -0.048 4.048 22 C -0.137 4.137 23 C -0.058 4.058 24 C 0.360 3.640 25 N -0.377 5.377 26 O -0.446 6.446 27 N -0.170 5.170 28 C -0.023 4.023 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.205 0.795 41 H 0.057 0.943 42 H 0.245 0.755 43 H 0.181 0.819 44 H 0.184 0.816 45 H 0.253 0.747 46 H 0.250 0.750 47 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -11.448 -3.209 -13.186 17.755 hybrid contribution 0.887 -0.187 1.022 1.366 sum -10.561 -3.396 -12.164 16.463 Atomic orbital electron populations 1.21797 0.94039 1.01087 1.01042 1.20856 0.95919 0.96034 0.94331 1.21889 1.01462 0.94196 1.02235 1.21894 1.01402 1.00122 0.96172 1.21165 0.93436 0.81598 0.98418 0.92179 1.21249 0.90681 0.95352 0.91030 1.42519 1.03883 1.60828 1.31277 1.19565 0.84744 1.24782 1.08174 0.90319 1.25460 1.01293 1.01203 0.98254 1.69806 1.34309 1.39298 1.18353 0.85303 0.80832 0.77316 0.76832 1.20823 1.22786 1.20064 1.45790 1.16472 1.10615 1.61543 1.18100 0.81835 0.87685 0.77569 1.90758 1.57259 1.48094 1.47614 1.21238 0.97381 0.94702 1.03638 1.21908 0.93902 0.96963 0.92030 1.22238 1.01926 0.91769 0.97750 1.21425 0.91467 0.95019 0.97846 1.17889 0.83935 0.84887 0.77272 1.43525 1.21224 1.10667 1.62271 1.90816 1.22528 1.82337 1.48922 1.67534 1.13577 1.20969 1.14957 1.23201 0.99328 0.86504 0.93276 0.93878 0.91947 0.93946 0.92010 0.90744 0.93367 0.92722 0.91303 0.91957 0.93480 0.94409 0.79456 0.94270 0.75507 0.81910 0.81555 0.74660 0.74985 0.80134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.02 6.99 71.98 0.50 -2.51 16 2 C -0.07 -1.66 0.62 -52.18 -0.03 -1.69 16 3 C -0.14 -3.06 8.12 71.98 0.58 -2.48 16 4 C -0.14 -2.78 7.97 71.98 0.57 -2.21 16 5 C 0.16 4.82 1.69 44.99 0.08 4.89 16 6 H 0.06 2.20 7.58 -2.39 -0.02 2.18 16 7 C 0.14 5.00 5.10 86.38 0.44 5.44 16 8 N -0.74 -34.47 5.43 -343.44 -1.87 -36.33 16 9 C -0.24 -12.53 9.99 84.04 0.84 -11.69 16 10 H 0.08 3.89 7.83 -2.91 -0.02 3.86 16 11 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 12 N -0.97 -57.18 13.06 21.65 0.28 -56.90 16 13 Si 0.97 44.37 29.55 68.60 2.03 46.40 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 15 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 17 N -0.69 -19.79 3.59 -445.26 -1.60 -21.39 16 18 C 0.56 16.78 6.14 86.83 0.53 17.32 16 19 O -0.56 -19.42 13.53 -3.81 -0.05 -19.48 16 20 C -0.16 -4.23 5.90 -19.93 -0.12 -4.35 16 21 C -0.02 -0.51 9.71 22.72 0.22 -0.29 16 22 C -0.12 -2.58 9.62 22.58 0.22 -2.36 16 23 C 0.08 1.88 6.75 41.95 0.28 2.16 16 24 C 0.58 13.08 8.09 86.93 0.70 13.79 16 25 N -0.81 -12.28 8.86 -175.26 -1.55 -13.83 16 26 O -0.57 -16.07 17.15 -3.70 -0.06 -16.14 16 27 N -0.46 -10.60 9.52 -183.91 -1.75 -12.35 16 28 C 0.14 3.24 10.71 85.12 0.91 4.16 16 29 H 0.04 1.23 7.53 -2.39 -0.02 1.21 16 30 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.04 1.11 5.78 -2.39 -0.01 1.10 16 32 H 0.06 1.37 6.54 -2.39 -0.02 1.35 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.05 1.07 7.60 -2.39 -0.02 1.06 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 1.28 6.32 -2.38 -0.02 1.26 16 38 H 0.05 1.52 6.17 -2.39 -0.01 1.51 16 39 H 0.04 1.34 6.71 -2.39 -0.02 1.33 16 40 H 0.37 19.00 7.33 -92.71 -0.68 18.32 16 41 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 42 H 0.41 10.73 6.66 -92.71 -0.62 10.11 16 43 H 0.16 3.52 7.73 -2.91 -0.02 3.50 16 44 H 0.17 3.24 7.63 -2.91 -0.02 3.22 16 45 H 0.42 5.36 8.15 -92.71 -0.76 4.61 16 46 H 0.42 4.52 8.93 -92.71 -0.83 3.70 16 47 H 0.18 3.68 6.41 -2.91 -0.02 3.66 16 Total: -1.00 -69.12 380.70 -0.20 -69.32 By element: Atomic # 1 Polarization: 45.69 SS G_CDS: -1.82 Total: 43.86 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 6.20 Total: 16.83 kcal Atomic # 7 Polarization: -134.31 SS G_CDS: -6.49 Total: -140.80 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.11 Total: -35.61 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -69.12 -0.20 -69.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725759352.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.444 kcal (2) G-P(sol) polarization free energy of solvation -69.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds