Wall clock time and date at job start Tue Mar 31 2020 17:49:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53006 * 109.47155 * 2 1
4 4 C 1.52991 * 109.47228 * 179.97438 * 3 2 1
5 5 C 1.52997 * 109.47202 * 179.97438 * 4 3 2
6 6 H 1.08995 * 109.47171 * 55.00116 * 5 4 3
7 7 C 1.52998 * 109.47098 * 175.00226 * 5 4 3
8 8 N 1.46502 * 109.47312 * 175.00228 * 7 5 4
9 9 C 1.36935 * 120.00162 * 179.97438 * 8 7 5
10 10 H 1.07997 * 120.00497 * 0.02562 * 9 8 7
11 11 C 1.38810 * 120.00035 * 179.97438 * 9 8 7
12 12 N 1.31617 * 120.00205 * 180.02562 * 11 9 8
13 13 Si 1.86803 * 119.99880 * 0.02562 * 11 9 8
14 14 H 1.48496 * 109.47166 * 89.99891 * 13 11 9
15 15 H 1.48502 * 109.47224 * 209.99691 * 13 11 9
16 16 H 1.48497 * 109.47229 * 329.99605 * 13 11 9
17 17 N 1.46501 * 109.47270 * 295.00109 * 5 4 3
18 18 C 1.34777 * 120.00180 * 84.99729 * 17 5 4
19 19 O 1.21531 * 119.99805 * 0.02562 * 18 17 5
20 20 C 1.47999 * 120.00075 * 179.97438 * 18 17 5
21 21 C 1.39872 * 120.46076 * 179.97438 * 20 18 17
22 22 C 1.38454 * 118.35544 * 180.02562 * 21 20 18
23 23 C 1.39295 * 119.19150 * 0.02562 * 22 21 20
24 24 C 1.48340 * 119.57362 * 180.02562 * 23 22 21
25 25 N 1.34775 * 120.00219 * 179.97438 * 24 23 22
26 26 O 1.21494 * 119.99687 * 359.97438 * 24 23 22
27 27 N 1.32714 * 120.85766 * 359.97438 * 23 22 21
28 28 C 1.31415 * 121.80348 * 0.02562 * 27 23 22
29 29 H 1.08995 * 109.47326 * 300.00211 * 1 2 3
30 30 H 1.09008 * 109.46850 * 60.00459 * 1 2 3
31 31 H 1.08993 * 109.47258 * 179.97438 * 1 2 3
32 32 H 1.08995 * 109.47326 * 239.99789 * 2 1 3
33 33 H 1.08994 * 109.46757 * 119.99509 * 2 1 3
34 34 H 1.09006 * 109.46855 * 59.99369 * 3 2 1
35 35 H 1.09000 * 109.46839 * 299.99869 * 3 2 1
36 36 H 1.09012 * 109.47144 * 59.99731 * 4 3 2
37 37 H 1.09001 * 109.47151 * 300.00376 * 4 3 2
38 38 H 1.09004 * 109.47541 * 294.99916 * 7 5 4
39 39 H 1.09003 * 109.47434 * 54.99914 * 7 5 4
40 40 H 0.97003 * 119.99938 * 359.97438 * 8 7 5
41 41 H 0.96998 * 119.99963 * 180.02562 * 12 11 9
42 42 H 0.97003 * 120.00195 * 265.00296 * 17 5 4
43 43 H 1.07996 * 120.82109 * 0.02562 * 21 20 18
44 44 H 1.08003 * 120.39925 * 180.02562 * 22 21 20
45 45 H 0.97003 * 120.00046 * 359.97438 * 25 24 23
46 46 H 0.96995 * 120.00039 * 180.02562 * 25 24 23
47 47 H 1.08004 * 119.64552 * 180.02562 * 28 27 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 3.5700 1.4426 0.0006
5 6 4.0799 2.8850 0.0000
6 1 3.6450 3.4246 0.8413
7 6 5.6047 2.8869 0.1263
8 7 6.1030 4.2593 0.0060
9 6 7.4468 4.5096 0.0886
10 1 8.1394 3.6952 0.2420
11 6 7.9190 5.8099 -0.0260
12 7 9.2106 6.0504 0.0529
13 14 6.7212 7.2184 -0.2920
14 1 6.2887 7.7555 1.0231
15 1 7.3864 8.2935 -1.0712
16 1 5.5363 6.7261 -1.0396
17 7 3.6929 3.5393 -1.2523
18 6 2.4756 4.1061 -1.3684
19 8 1.6992 4.0749 -0.4339
20 6 2.0849 4.7676 -2.6333
21 6 0.8239 5.3584 -2.7645
22 6 0.5036 5.9648 -3.9673
23 6 1.4403 5.9656 -4.9983
24 6 1.1063 6.6133 -6.2903
25 7 2.0063 6.6196 -7.2935
26 8 0.0215 7.1381 -6.4442
27 7 2.6281 5.3952 -4.8393
28 6 2.9701 4.8096 -3.7136
29 1 -0.3634 0.5138 0.8899
30 1 -0.3633 0.5138 -0.8901
31 1 -0.3633 -1.0276 -0.0005
32 1 1.8934 -0.5138 -0.8899
33 1 1.8933 -0.5137 0.8900
34 1 1.6766 1.9564 0.8900
35 1 1.6767 1.9563 -0.8900
36 1 3.9337 0.9285 -0.8892
37 1 3.9329 0.9288 0.8908
38 1 5.8895 2.4809 1.0970
39 1 6.0356 2.2732 -0.6648
40 1 5.4811 4.9908 -0.1322
41 1 9.5404 6.9590 -0.0268
42 1 4.3127 3.5645 -1.9981
43 1 0.1175 5.3420 -1.9477
44 1 -0.4607 6.4315 -4.1044
45 1 2.8726 6.2008 -7.1706
46 1 1.7881 7.0434 -8.1382
47 1 3.9462 4.3567 -3.6222
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001734101076.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:49:56
Heat of formation + Delta-G solvation = -39.771359 kcal
Electronic energy + Delta-G solvation = -28806.241779 eV
Core-core repulsion = 24795.782091 eV
Total energy + Delta-G solvation = -4010.459688 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 334.179 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-41.16024 -39.96430 -38.82959 -36.78960 -35.11427 -34.20415 -33.83644 -32.72956
-32.34223 -31.19619 -30.49508 -27.70639 -25.82664 -24.23824 -23.96168 -22.26592
-21.92498 -21.01434 -20.83985 -20.42134 -18.72096 -18.14897 -17.70210 -17.21782
-16.68568 -16.08899 -15.57592 -15.42070 -15.24057 -14.96989 -14.85151 -14.60167
-14.21014 -13.96760 -13.79869 -13.50453 -13.46347 -13.10134 -13.04090 -12.83128
-12.81386 -12.26528 -12.16097 -11.52547 -11.43666 -11.09453 -10.99300 -10.94162
-10.82345 -10.48930 -10.42530 -10.32101 -10.29826 -10.19698 -10.06419 -9.77599
-9.69140 -9.59463 -9.03623 -8.93071 -7.35788 -5.86035 -3.22921 -0.05664
0.81680 2.13075 2.90881 2.95916 3.06875 3.28518 3.33923 3.39679
3.58648 3.76921 4.39834 4.42644 4.50270 4.56173 4.60857 4.68924
4.81829 4.95482 5.05742 5.21381 5.25094 5.30071 5.34389 5.43888
5.56995 5.62583 5.65784 5.68762 5.78452 5.80728 5.90589 5.98849
6.03925 6.05769 6.12958 6.23760 6.33623 6.37035 6.45696 6.50997
6.68001 6.88665 7.29173 7.47300 7.84448 7.88626 8.12056 8.32448
9.10608 9.82718 10.01319 11.32023
Molecular weight = 334.18amu
Principal moments of inertia in cm(-1)
A = 0.006711 B = 0.004563 C = 0.002930
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4171.421372 B = 6135.470679 C = 9553.217291
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.125 4.125
3 C -0.113 4.113
4 C -0.127 4.127
5 C 0.134 3.866
6 H 0.091 0.909
7 C 0.148 3.852
8 N -0.755 5.755
9 C -0.249 4.249
10 H 0.092 0.908
11 C 0.010 3.990
12 N -0.931 5.931
13 Si 0.882 3.118
14 H -0.284 1.284
15 H -0.290 1.290
16 H -0.279 1.279
17 N -0.705 5.705
18 C 0.559 3.441
19 O -0.527 6.527
20 C -0.157 4.157
21 C -0.023 4.023
22 C -0.118 4.118
23 C 0.089 3.911
24 C 0.579 3.421
25 N -0.833 5.833
26 O -0.535 6.535
27 N -0.460 5.460
28 C 0.135 3.865
29 H 0.053 0.947
30 H 0.050 0.950
31 H 0.049 0.951
32 H 0.056 0.944
33 H 0.058 0.942
34 H 0.067 0.933
35 H 0.062 0.938
36 H 0.065 0.935
37 H 0.075 0.925
38 H 0.045 0.955
39 H 0.034 0.966
40 H 0.362 0.638
41 H 0.260 0.740
42 H 0.403 0.597
43 H 0.157 0.843
44 H 0.156 0.844
45 H 0.414 0.586
46 H 0.406 0.594
47 H 0.170 0.830
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.142 -7.439 -9.680 21.045
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.163 4.163
3 C -0.151 4.151
4 C -0.166 4.166
5 C 0.030 3.970
6 H 0.109 0.891
7 C 0.021 3.979
8 N -0.402 5.402
9 C -0.378 4.378
10 H 0.109 0.891
11 C -0.187 4.187
12 N -0.578 5.578
13 Si 0.713 3.287
14 H -0.210 1.210
15 H -0.216 1.216
16 H -0.206 1.206
17 N -0.356 5.356
18 C 0.344 3.656
19 O -0.405 6.405
20 C -0.162 4.162
21 C -0.050 4.050
22 C -0.138 4.138
23 C -0.049 4.049
24 C 0.362 3.638
25 N -0.396 5.396
26 O -0.411 6.411
27 N -0.171 5.171
28 C -0.025 4.025
29 H 0.072 0.928
30 H 0.070 0.930
31 H 0.068 0.932
32 H 0.075 0.925
33 H 0.077 0.923
34 H 0.085 0.915
35 H 0.080 0.920
36 H 0.084 0.916
37 H 0.093 0.907
38 H 0.062 0.938
39 H 0.052 0.948
40 H 0.195 0.805
41 H 0.071 0.929
42 H 0.239 0.761
43 H 0.175 0.825
44 H 0.173 0.827
45 H 0.245 0.755
46 H 0.237 0.763
47 H 0.187 0.813
Dipole moment (debyes) X Y Z Total
from point charges -17.574 -7.186 -9.615 21.283
hybrid contribution -0.470 1.121 -0.129 1.223
sum -18.044 -6.064 -9.745 21.385
Atomic orbital electron populations
1.21743 0.96229 1.00956 1.01805 1.21567 0.95648 0.97576 1.01498
1.21679 0.94710 0.95574 1.03091 1.21977 0.96122 0.95808 1.02668
1.21463 0.96333 0.92951 0.86283 0.89095 1.20965 0.88731 0.88370
0.99861 1.42700 1.05426 1.02549 1.89476 1.19030 0.81972 0.94272
1.42559 0.89054 1.24648 0.95449 0.96879 1.01700 1.69690 1.11418
1.20046 1.56643 0.86606 0.80675 0.83384 0.78077 1.21046 1.21646
1.20573 1.45981 1.15520 1.56507 1.17580 1.17920 0.82412 0.78543
0.86725 1.90785 1.51270 1.58973 1.39441 1.21343 0.96605 1.02034
0.96260 1.21798 0.95029 0.90923 0.97209 1.22125 1.01197 0.98324
0.92202 1.21256 0.91020 0.97665 0.94998 1.17874 0.83967 0.78739
0.83244 1.43642 1.19639 1.60199 1.16141 1.90836 1.22863 1.45544
1.81858 1.67517 1.16803 1.07808 1.24945 1.23043 0.98997 0.93488
0.87016 0.92777 0.93041 0.93235 0.92539 0.92287 0.91459 0.91967
0.91649 0.90687 0.93756 0.94797 0.80479 0.92941 0.76053 0.82531
0.82670 0.75526 0.76288 0.81292
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16
2 C -0.13 -1.25 5.93 -26.73 -0.16 -1.40 16
3 C -0.11 -1.32 3.82 -26.73 -0.10 -1.42 16
4 C -0.13 -1.45 4.89 -26.74 -0.13 -1.58 16
5 C 0.13 1.87 2.42 -67.93 -0.16 1.71 16
6 H 0.09 1.44 7.58 -51.93 -0.39 1.04 16
7 C 0.15 2.50 5.82 -4.04 -0.02 2.48 16
8 N -0.76 -16.50 5.24 -59.91 -0.31 -16.81 16
9 C -0.25 -6.66 10.47 -15.06 -0.16 -6.82 16
10 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16
11 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16
12 N -0.93 -28.39 13.97 55.49 0.78 -27.62 16
13 Si 0.88 21.66 27.74 -169.99 -4.71 16.94 16
14 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16
15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16
16 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16
17 N -0.70 -9.28 4.42 -54.71 -0.24 -9.52 16
18 C 0.56 7.63 6.35 -12.26 -0.08 7.55 16
19 O -0.53 -8.29 13.55 5.34 0.07 -8.21 16
20 C -0.16 -1.88 5.90 -104.73 -0.62 -2.50 16
21 C -0.02 -0.25 9.71 -38.89 -0.38 -0.63 16
22 C -0.12 -1.24 9.62 -39.11 -0.38 -1.62 16
23 C 0.09 1.01 6.75 -82.94 -0.56 0.45 16
24 C 0.58 6.46 8.09 -12.10 -0.10 6.36 16
25 N -0.83 -6.41 8.86 30.64 0.27 -6.14 16
26 O -0.54 -7.42 17.15 5.37 0.09 -7.33 16
27 N -0.46 -5.17 9.52 -9.48 -0.09 -5.26 16
28 C 0.14 1.52 10.71 -17.17 -0.18 1.33 16
29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
30 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16
31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16
32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16
33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16
34 H 0.07 0.89 7.85 -51.93 -0.41 0.48 16
35 H 0.06 0.80 5.64 -51.93 -0.29 0.50 16
36 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16
37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16
39 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16
40 H 0.36 7.93 5.20 -40.82 -0.21 7.72 16
41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16
42 H 0.40 4.86 6.66 -40.82 -0.27 4.59 16
43 H 0.16 1.54 7.73 -52.49 -0.41 1.13 16
44 H 0.16 1.44 7.63 -52.48 -0.40 1.04 16
45 H 0.41 2.73 8.15 -40.82 -0.33 2.40 16
46 H 0.41 2.32 8.93 -40.82 -0.36 1.96 16
47 H 0.17 1.60 6.41 -52.48 -0.34 1.27 16
LS Contribution 388.48 15.07 5.85 5.85
Total: -1.00 -33.60 388.48 -7.86 -41.47
By element:
Atomic # 1 Polarization: 20.41 SS G_CDS: -6.81 Total: 13.60 kcal
Atomic # 6 Polarization: 5.78 SS G_CDS: -2.75 Total: 3.02 kcal
Atomic # 7 Polarization: -65.75 SS G_CDS: 0.40 Total: -65.35 kcal
Atomic # 8 Polarization: -15.70 SS G_CDS: 0.16 Total: -15.54 kcal
Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -33.60 -7.86 -41.47 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001734101076.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.695 kcal
(2) G-P(sol) polarization free energy of solvation -33.602 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.907 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.771 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds