Wall clock time and date at job start Tue Mar 31 2020 17:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 C 1.52991 * 109.47228 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47202 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.47171 * 55.00116 * 5 4 3 7 7 C 1.52998 * 109.47098 * 175.00226 * 5 4 3 8 8 N 1.46502 * 109.47312 * 175.00228 * 7 5 4 9 9 C 1.36935 * 120.00162 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00497 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00035 * 179.97438 * 9 8 7 12 12 N 1.31617 * 120.00205 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99880 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47166 * 89.99891 * 13 11 9 15 15 H 1.48502 * 109.47224 * 209.99691 * 13 11 9 16 16 H 1.48497 * 109.47229 * 329.99605 * 13 11 9 17 17 N 1.46501 * 109.47270 * 295.00109 * 5 4 3 18 18 C 1.34777 * 120.00180 * 84.99729 * 17 5 4 19 19 O 1.21531 * 119.99805 * 0.02562 * 18 17 5 20 20 C 1.47999 * 120.00075 * 179.97438 * 18 17 5 21 21 C 1.39872 * 120.46076 * 179.97438 * 20 18 17 22 22 C 1.38454 * 118.35544 * 180.02562 * 21 20 18 23 23 C 1.39295 * 119.19150 * 0.02562 * 22 21 20 24 24 C 1.48340 * 119.57362 * 180.02562 * 23 22 21 25 25 N 1.34775 * 120.00219 * 179.97438 * 24 23 22 26 26 O 1.21494 * 119.99687 * 359.97438 * 24 23 22 27 27 N 1.32714 * 120.85766 * 359.97438 * 23 22 21 28 28 C 1.31415 * 121.80348 * 0.02562 * 27 23 22 29 29 H 1.08995 * 109.47326 * 300.00211 * 1 2 3 30 30 H 1.09008 * 109.46850 * 60.00459 * 1 2 3 31 31 H 1.08993 * 109.47258 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47326 * 239.99789 * 2 1 3 33 33 H 1.08994 * 109.46757 * 119.99509 * 2 1 3 34 34 H 1.09006 * 109.46855 * 59.99369 * 3 2 1 35 35 H 1.09000 * 109.46839 * 299.99869 * 3 2 1 36 36 H 1.09012 * 109.47144 * 59.99731 * 4 3 2 37 37 H 1.09001 * 109.47151 * 300.00376 * 4 3 2 38 38 H 1.09004 * 109.47541 * 294.99916 * 7 5 4 39 39 H 1.09003 * 109.47434 * 54.99914 * 7 5 4 40 40 H 0.97003 * 119.99938 * 359.97438 * 8 7 5 41 41 H 0.96998 * 119.99963 * 180.02562 * 12 11 9 42 42 H 0.97003 * 120.00195 * 265.00296 * 17 5 4 43 43 H 1.07996 * 120.82109 * 0.02562 * 21 20 18 44 44 H 1.08003 * 120.39925 * 180.02562 * 22 21 20 45 45 H 0.97003 * 120.00046 * 359.97438 * 25 24 23 46 46 H 0.96995 * 120.00039 * 180.02562 * 25 24 23 47 47 H 1.08004 * 119.64552 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6450 3.4246 0.8413 7 6 5.6047 2.8869 0.1263 8 7 6.1030 4.2593 0.0060 9 6 7.4468 4.5096 0.0886 10 1 8.1394 3.6952 0.2420 11 6 7.9190 5.8099 -0.0260 12 7 9.2106 6.0504 0.0529 13 14 6.7212 7.2184 -0.2920 14 1 6.2887 7.7555 1.0231 15 1 7.3864 8.2935 -1.0712 16 1 5.5363 6.7261 -1.0396 17 7 3.6929 3.5393 -1.2523 18 6 2.4756 4.1061 -1.3684 19 8 1.6992 4.0749 -0.4339 20 6 2.0849 4.7676 -2.6333 21 6 0.8239 5.3584 -2.7645 22 6 0.5036 5.9648 -3.9673 23 6 1.4403 5.9656 -4.9983 24 6 1.1063 6.6133 -6.2903 25 7 2.0063 6.6196 -7.2935 26 8 0.0215 7.1381 -6.4442 27 7 2.6281 5.3952 -4.8393 28 6 2.9701 4.8096 -3.7136 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9337 0.9285 -0.8892 37 1 3.9329 0.9288 0.8908 38 1 5.8895 2.4809 1.0970 39 1 6.0356 2.2732 -0.6648 40 1 5.4811 4.9908 -0.1322 41 1 9.5404 6.9590 -0.0268 42 1 4.3127 3.5645 -1.9981 43 1 0.1175 5.3420 -1.9477 44 1 -0.4607 6.4315 -4.1044 45 1 2.8726 6.2008 -7.1706 46 1 1.7881 7.0434 -8.1382 47 1 3.9462 4.3567 -3.6222 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734101076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:56 Heat of formation + Delta-G solvation = -39.771359 kcal Electronic energy + Delta-G solvation = -28806.241779 eV Core-core repulsion = 24795.782091 eV Total energy + Delta-G solvation = -4010.459688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.16024 -39.96430 -38.82959 -36.78960 -35.11427 -34.20415 -33.83644 -32.72956 -32.34223 -31.19619 -30.49508 -27.70639 -25.82664 -24.23824 -23.96168 -22.26592 -21.92498 -21.01434 -20.83985 -20.42134 -18.72096 -18.14897 -17.70210 -17.21782 -16.68568 -16.08899 -15.57592 -15.42070 -15.24057 -14.96989 -14.85151 -14.60167 -14.21014 -13.96760 -13.79869 -13.50453 -13.46347 -13.10134 -13.04090 -12.83128 -12.81386 -12.26528 -12.16097 -11.52547 -11.43666 -11.09453 -10.99300 -10.94162 -10.82345 -10.48930 -10.42530 -10.32101 -10.29826 -10.19698 -10.06419 -9.77599 -9.69140 -9.59463 -9.03623 -8.93071 -7.35788 -5.86035 -3.22921 -0.05664 0.81680 2.13075 2.90881 2.95916 3.06875 3.28518 3.33923 3.39679 3.58648 3.76921 4.39834 4.42644 4.50270 4.56173 4.60857 4.68924 4.81829 4.95482 5.05742 5.21381 5.25094 5.30071 5.34389 5.43888 5.56995 5.62583 5.65784 5.68762 5.78452 5.80728 5.90589 5.98849 6.03925 6.05769 6.12958 6.23760 6.33623 6.37035 6.45696 6.50997 6.68001 6.88665 7.29173 7.47300 7.84448 7.88626 8.12056 8.32448 9.10608 9.82718 10.01319 11.32023 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.006711 B = 0.004563 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4171.421372 B = 6135.470679 C = 9553.217291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.127 4.127 5 C 0.134 3.866 6 H 0.091 0.909 7 C 0.148 3.852 8 N -0.755 5.755 9 C -0.249 4.249 10 H 0.092 0.908 11 C 0.010 3.990 12 N -0.931 5.931 13 Si 0.882 3.118 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.279 1.279 17 N -0.705 5.705 18 C 0.559 3.441 19 O -0.527 6.527 20 C -0.157 4.157 21 C -0.023 4.023 22 C -0.118 4.118 23 C 0.089 3.911 24 C 0.579 3.421 25 N -0.833 5.833 26 O -0.535 6.535 27 N -0.460 5.460 28 C 0.135 3.865 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.045 0.955 39 H 0.034 0.966 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.403 0.597 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.414 0.586 46 H 0.406 0.594 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.142 -7.439 -9.680 21.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.166 4.166 5 C 0.030 3.970 6 H 0.109 0.891 7 C 0.021 3.979 8 N -0.402 5.402 9 C -0.378 4.378 10 H 0.109 0.891 11 C -0.187 4.187 12 N -0.578 5.578 13 Si 0.713 3.287 14 H -0.210 1.210 15 H -0.216 1.216 16 H -0.206 1.206 17 N -0.356 5.356 18 C 0.344 3.656 19 O -0.405 6.405 20 C -0.162 4.162 21 C -0.050 4.050 22 C -0.138 4.138 23 C -0.049 4.049 24 C 0.362 3.638 25 N -0.396 5.396 26 O -0.411 6.411 27 N -0.171 5.171 28 C -0.025 4.025 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.195 0.805 41 H 0.071 0.929 42 H 0.239 0.761 43 H 0.175 0.825 44 H 0.173 0.827 45 H 0.245 0.755 46 H 0.237 0.763 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -17.574 -7.186 -9.615 21.283 hybrid contribution -0.470 1.121 -0.129 1.223 sum -18.044 -6.064 -9.745 21.385 Atomic orbital electron populations 1.21743 0.96229 1.00956 1.01805 1.21567 0.95648 0.97576 1.01498 1.21679 0.94710 0.95574 1.03091 1.21977 0.96122 0.95808 1.02668 1.21463 0.96333 0.92951 0.86283 0.89095 1.20965 0.88731 0.88370 0.99861 1.42700 1.05426 1.02549 1.89476 1.19030 0.81972 0.94272 1.42559 0.89054 1.24648 0.95449 0.96879 1.01700 1.69690 1.11418 1.20046 1.56643 0.86606 0.80675 0.83384 0.78077 1.21046 1.21646 1.20573 1.45981 1.15520 1.56507 1.17580 1.17920 0.82412 0.78543 0.86725 1.90785 1.51270 1.58973 1.39441 1.21343 0.96605 1.02034 0.96260 1.21798 0.95029 0.90923 0.97209 1.22125 1.01197 0.98324 0.92202 1.21256 0.91020 0.97665 0.94998 1.17874 0.83967 0.78739 0.83244 1.43642 1.19639 1.60199 1.16141 1.90836 1.22863 1.45544 1.81858 1.67517 1.16803 1.07808 1.24945 1.23043 0.98997 0.93488 0.87016 0.92777 0.93041 0.93235 0.92539 0.92287 0.91459 0.91967 0.91649 0.90687 0.93756 0.94797 0.80479 0.92941 0.76053 0.82531 0.82670 0.75526 0.76288 0.81292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.13 -1.25 5.93 -26.73 -0.16 -1.40 16 3 C -0.11 -1.32 3.82 -26.73 -0.10 -1.42 16 4 C -0.13 -1.45 4.89 -26.74 -0.13 -1.58 16 5 C 0.13 1.87 2.42 -67.93 -0.16 1.71 16 6 H 0.09 1.44 7.58 -51.93 -0.39 1.04 16 7 C 0.15 2.50 5.82 -4.04 -0.02 2.48 16 8 N -0.76 -16.50 5.24 -59.91 -0.31 -16.81 16 9 C -0.25 -6.66 10.47 -15.06 -0.16 -6.82 16 10 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 11 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 12 N -0.93 -28.39 13.97 55.49 0.78 -27.62 16 13 Si 0.88 21.66 27.74 -169.99 -4.71 16.94 16 14 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 17 N -0.70 -9.28 4.42 -54.71 -0.24 -9.52 16 18 C 0.56 7.63 6.35 -12.26 -0.08 7.55 16 19 O -0.53 -8.29 13.55 5.34 0.07 -8.21 16 20 C -0.16 -1.88 5.90 -104.73 -0.62 -2.50 16 21 C -0.02 -0.25 9.71 -38.89 -0.38 -0.63 16 22 C -0.12 -1.24 9.62 -39.11 -0.38 -1.62 16 23 C 0.09 1.01 6.75 -82.94 -0.56 0.45 16 24 C 0.58 6.46 8.09 -12.10 -0.10 6.36 16 25 N -0.83 -6.41 8.86 30.64 0.27 -6.14 16 26 O -0.54 -7.42 17.15 5.37 0.09 -7.33 16 27 N -0.46 -5.17 9.52 -9.48 -0.09 -5.26 16 28 C 0.14 1.52 10.71 -17.17 -0.18 1.33 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.89 7.85 -51.93 -0.41 0.48 16 35 H 0.06 0.80 5.64 -51.93 -0.29 0.50 16 36 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.36 7.93 5.20 -40.82 -0.21 7.72 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.40 4.86 6.66 -40.82 -0.27 4.59 16 43 H 0.16 1.54 7.73 -52.49 -0.41 1.13 16 44 H 0.16 1.44 7.63 -52.48 -0.40 1.04 16 45 H 0.41 2.73 8.15 -40.82 -0.33 2.40 16 46 H 0.41 2.32 8.93 -40.82 -0.36 1.96 16 47 H 0.17 1.60 6.41 -52.48 -0.34 1.27 16 LS Contribution 388.48 15.07 5.85 5.85 Total: -1.00 -33.60 388.48 -7.86 -41.47 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -6.81 Total: 13.60 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -2.75 Total: 3.02 kcal Atomic # 7 Polarization: -65.75 SS G_CDS: 0.40 Total: -65.35 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.16 Total: -15.54 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.60 -7.86 -41.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734101076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.695 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds