Wall clock time and date at job start Tue Mar 31 2020 17:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 C 1.52991 * 109.47228 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47202 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.47171 * 55.00116 * 5 4 3 7 7 C 1.52998 * 109.47098 * 175.00226 * 5 4 3 8 8 N 1.46502 * 109.47312 * 175.00228 * 7 5 4 9 9 C 1.36935 * 120.00162 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00497 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00035 * 179.97438 * 9 8 7 12 12 N 1.31617 * 120.00205 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99880 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47166 * 89.99891 * 13 11 9 15 15 H 1.48502 * 109.47224 * 209.99691 * 13 11 9 16 16 H 1.48497 * 109.47229 * 329.99605 * 13 11 9 17 17 N 1.46501 * 109.47270 * 295.00109 * 5 4 3 18 18 C 1.34777 * 120.00180 * 84.99729 * 17 5 4 19 19 O 1.21531 * 119.99805 * 0.02562 * 18 17 5 20 20 C 1.47999 * 120.00075 * 179.97438 * 18 17 5 21 21 C 1.39872 * 120.46076 * 179.97438 * 20 18 17 22 22 C 1.38454 * 118.35544 * 180.02562 * 21 20 18 23 23 C 1.39295 * 119.19150 * 0.02562 * 22 21 20 24 24 C 1.48340 * 119.57362 * 180.02562 * 23 22 21 25 25 N 1.34775 * 120.00219 * 179.97438 * 24 23 22 26 26 O 1.21494 * 119.99687 * 359.97438 * 24 23 22 27 27 N 1.32714 * 120.85766 * 359.97438 * 23 22 21 28 28 C 1.31415 * 121.80348 * 0.02562 * 27 23 22 29 29 H 1.08995 * 109.47326 * 300.00211 * 1 2 3 30 30 H 1.09008 * 109.46850 * 60.00459 * 1 2 3 31 31 H 1.08993 * 109.47258 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47326 * 239.99789 * 2 1 3 33 33 H 1.08994 * 109.46757 * 119.99509 * 2 1 3 34 34 H 1.09006 * 109.46855 * 59.99369 * 3 2 1 35 35 H 1.09000 * 109.46839 * 299.99869 * 3 2 1 36 36 H 1.09012 * 109.47144 * 59.99731 * 4 3 2 37 37 H 1.09001 * 109.47151 * 300.00376 * 4 3 2 38 38 H 1.09004 * 109.47541 * 294.99916 * 7 5 4 39 39 H 1.09003 * 109.47434 * 54.99914 * 7 5 4 40 40 H 0.97003 * 119.99938 * 359.97438 * 8 7 5 41 41 H 0.96998 * 119.99963 * 180.02562 * 12 11 9 42 42 H 0.97003 * 120.00195 * 265.00296 * 17 5 4 43 43 H 1.07996 * 120.82109 * 0.02562 * 21 20 18 44 44 H 1.08003 * 120.39925 * 180.02562 * 22 21 20 45 45 H 0.97003 * 120.00046 * 359.97438 * 25 24 23 46 46 H 0.96995 * 120.00039 * 180.02562 * 25 24 23 47 47 H 1.08004 * 119.64552 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6450 3.4246 0.8413 7 6 5.6047 2.8869 0.1263 8 7 6.1030 4.2593 0.0060 9 6 7.4468 4.5096 0.0886 10 1 8.1394 3.6952 0.2420 11 6 7.9190 5.8099 -0.0260 12 7 9.2106 6.0504 0.0529 13 14 6.7212 7.2184 -0.2920 14 1 6.2887 7.7555 1.0231 15 1 7.3864 8.2935 -1.0712 16 1 5.5363 6.7261 -1.0396 17 7 3.6929 3.5393 -1.2523 18 6 2.4756 4.1061 -1.3684 19 8 1.6992 4.0749 -0.4339 20 6 2.0849 4.7676 -2.6333 21 6 0.8239 5.3584 -2.7645 22 6 0.5036 5.9648 -3.9673 23 6 1.4403 5.9656 -4.9983 24 6 1.1063 6.6133 -6.2903 25 7 2.0063 6.6196 -7.2935 26 8 0.0215 7.1381 -6.4442 27 7 2.6281 5.3952 -4.8393 28 6 2.9701 4.8096 -3.7136 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9337 0.9285 -0.8892 37 1 3.9329 0.9288 0.8908 38 1 5.8895 2.4809 1.0970 39 1 6.0356 2.2732 -0.6648 40 1 5.4811 4.9908 -0.1322 41 1 9.5404 6.9590 -0.0268 42 1 4.3127 3.5645 -1.9981 43 1 0.1175 5.3420 -1.9477 44 1 -0.4607 6.4315 -4.1044 45 1 2.8726 6.2008 -7.1706 46 1 1.7881 7.0434 -8.1382 47 1 3.9462 4.3567 -3.6222 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734101076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:55 Heat of formation + Delta-G solvation = -65.234996 kcal Electronic energy + Delta-G solvation = -28807.345965 eV Core-core repulsion = 24795.782091 eV Total energy + Delta-G solvation = -4011.563874 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.06836 -40.96676 -39.74414 -37.99959 -36.33179 -35.24363 -35.00775 -33.64574 -33.54214 -32.76978 -31.50958 -29.00436 -26.81515 -25.62931 -24.82261 -23.53996 -23.10990 -22.02799 -21.78380 -21.47815 -19.91769 -19.43865 -18.80719 -18.27796 -17.62940 -17.01030 -16.74010 -16.43485 -16.28760 -16.11789 -15.97639 -15.82619 -15.51109 -14.98659 -14.83704 -14.65078 -14.52819 -14.35725 -14.23651 -13.92189 -13.87976 -13.63411 -13.27500 -12.96266 -12.91951 -12.58934 -12.13007 -11.96089 -11.87402 -11.83223 -11.72238 -11.45436 -11.40009 -11.27085 -11.16878 -11.02428 -10.83337 -10.72440 -10.47138 -10.03262 -9.30677 -8.02771 -5.35584 -0.94850 -0.02130 1.22795 1.33566 1.37942 1.43809 1.93374 2.01138 2.20214 2.45695 2.69515 2.96589 3.30231 3.43006 3.52684 3.61431 3.74138 3.78415 3.89443 3.96891 4.09741 4.15056 4.31218 4.34656 4.47515 4.53546 4.61352 4.74994 4.82264 4.85228 4.94569 4.95535 5.01076 5.09293 5.15396 5.22158 5.22906 5.34786 5.39782 5.54927 5.61687 5.70817 5.77987 6.13961 6.20905 6.42072 6.48390 7.07183 7.08453 7.11858 7.83249 8.00636 9.18624 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.006711 B = 0.004563 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4171.421372 B = 6135.470679 C = 9553.217291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.106 4.106 4 C -0.119 4.119 5 C 0.145 3.855 6 H 0.073 0.927 7 C 0.147 3.853 8 N -0.757 5.757 9 C -0.227 4.227 10 H 0.065 0.935 11 C -0.055 4.055 12 N -0.981 5.981 13 Si 0.943 3.057 14 H -0.289 1.289 15 H -0.297 1.297 16 H -0.252 1.252 17 N -0.703 5.703 18 C 0.561 3.439 19 O -0.551 6.551 20 C -0.167 4.167 21 C -0.020 4.020 22 C -0.116 4.116 23 C 0.081 3.919 24 C 0.576 3.424 25 N -0.813 5.813 26 O -0.568 6.568 27 N -0.460 5.460 28 C 0.134 3.866 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.045 0.955 39 H 0.048 0.952 40 H 0.364 0.636 41 H 0.257 0.743 42 H 0.410 0.590 43 H 0.165 0.835 44 H 0.166 0.834 45 H 0.422 0.578 46 H 0.417 0.583 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.586 -8.252 -10.700 22.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.143 4.143 4 C -0.158 4.158 5 C 0.041 3.959 6 H 0.091 0.909 7 C 0.021 3.979 8 N -0.403 5.403 9 C -0.358 4.358 10 H 0.083 0.917 11 C -0.247 4.247 12 N -0.631 5.631 13 Si 0.772 3.228 14 H -0.216 1.216 15 H -0.224 1.224 16 H -0.177 1.177 17 N -0.354 5.354 18 C 0.347 3.653 19 O -0.430 6.430 20 C -0.173 4.173 21 C -0.046 4.046 22 C -0.137 4.137 23 C -0.057 4.057 24 C 0.359 3.641 25 N -0.377 5.377 26 O -0.446 6.446 27 N -0.171 5.171 28 C -0.027 4.027 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.197 0.803 41 H 0.066 0.934 42 H 0.247 0.753 43 H 0.182 0.818 44 H 0.184 0.816 45 H 0.254 0.746 46 H 0.250 0.750 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -19.033 -8.046 -10.675 23.258 hybrid contribution -0.001 1.265 0.192 1.279 sum -19.034 -6.782 -10.482 22.763 Atomic orbital electron populations 1.21741 0.95975 1.01705 1.01303 1.21545 0.95889 0.96312 1.02243 1.21566 0.94671 0.96499 1.01599 1.21928 0.95940 0.94040 1.03894 1.21256 0.93966 0.94517 0.86198 0.90891 1.21135 0.90734 0.85835 1.00225 1.42695 1.03553 1.04762 1.89247 1.19036 0.83732 0.93310 1.39762 0.91716 1.25335 0.96857 0.99544 1.02951 1.69852 1.13616 1.20313 1.59354 0.85596 0.79415 0.80028 0.77783 1.21609 1.22355 1.17651 1.45934 1.15667 1.56417 1.17415 1.18102 0.82101 0.78124 0.86961 1.90778 1.51921 1.59910 1.40425 1.21260 0.97342 1.02863 0.95800 1.21922 0.94841 0.90358 0.97519 1.22249 1.01577 0.98023 0.91832 1.21426 0.91248 0.97640 0.95347 1.17913 0.83926 0.78566 0.83693 1.43537 1.19247 1.59058 1.15864 1.90822 1.24205 1.47189 1.82417 1.67546 1.16749 1.07950 1.24904 1.23289 0.99466 0.93227 0.86669 0.93335 0.93526 0.91863 0.91699 0.91566 0.93328 0.93116 0.90201 0.89644 0.93690 0.93368 0.80301 0.93405 0.75274 0.81763 0.81613 0.74636 0.74995 0.79757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.91 71.98 0.71 -1.87 16 2 C -0.12 -2.17 5.93 30.60 0.18 -1.98 16 3 C -0.11 -2.30 3.82 30.59 0.12 -2.18 16 4 C -0.12 -2.46 4.89 30.59 0.15 -2.31 16 5 C 0.15 3.80 2.42 44.99 0.11 3.91 16 6 H 0.07 2.22 7.58 -2.39 -0.02 2.20 16 7 C 0.15 4.69 5.82 86.38 0.50 5.19 16 8 N -0.76 -31.90 5.24 -343.45 -1.80 -33.70 16 9 C -0.23 -12.11 10.47 84.03 0.88 -11.23 16 10 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 11 C -0.05 -3.11 5.50 84.86 0.47 -2.64 16 12 N -0.98 -60.88 13.97 21.65 0.30 -60.58 16 13 Si 0.94 44.40 27.74 68.60 1.90 46.30 16 14 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 15 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 16 H -0.25 -10.54 6.52 99.48 0.65 -9.89 16 17 N -0.70 -17.10 4.42 -445.28 -1.97 -19.07 16 18 C 0.56 14.42 6.35 86.83 0.55 14.97 16 19 O -0.55 -16.77 13.55 -3.81 -0.05 -16.83 16 20 C -0.17 -3.71 5.90 -19.93 -0.12 -3.83 16 21 C -0.02 -0.40 9.71 22.72 0.22 -0.18 16 22 C -0.12 -2.28 9.62 22.58 0.22 -2.06 16 23 C 0.08 1.70 6.75 41.96 0.28 1.99 16 24 C 0.58 11.99 8.09 86.93 0.70 12.70 16 25 N -0.81 -10.97 8.86 -175.26 -1.55 -12.53 16 26 O -0.57 -15.17 17.15 -3.70 -0.06 -15.23 16 27 N -0.46 -9.39 9.52 -183.90 -1.75 -11.14 16 28 C 0.13 2.71 10.71 85.12 0.91 3.63 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 1.24 7.85 -2.38 -0.02 1.22 16 35 H 0.05 1.23 5.64 -2.39 -0.01 1.21 16 36 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.36 15.16 5.20 -92.71 -0.48 14.68 16 41 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 42 H 0.41 8.87 6.66 -92.71 -0.62 8.25 16 43 H 0.16 3.01 7.73 -2.91 -0.02 2.99 16 44 H 0.17 2.86 7.63 -2.91 -0.02 2.83 16 45 H 0.42 4.64 8.15 -92.71 -0.76 3.88 16 46 H 0.42 3.97 8.93 -92.71 -0.83 3.14 16 47 H 0.19 3.02 6.41 -2.91 -0.02 3.00 16 Total: -1.00 -72.09 388.48 -0.80 -72.89 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: -1.70 Total: 35.77 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 5.89 Total: 14.10 kcal Atomic # 7 Polarization: -130.24 SS G_CDS: -6.77 Total: -137.01 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.12 Total: -32.05 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.90 Total: 46.30 kcal Total: -72.09 -0.80 -72.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734101076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.656 kcal (2) G-P(sol) polarization free energy of solvation -72.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds