Wall clock time and date at job start Tue Mar 31 2020 17:49:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53006 * 109.47155 * 2 1
4 4 C 1.52991 * 109.47228 * 179.97438 * 3 2 1
5 5 C 1.52997 * 109.47202 * 179.97438 * 4 3 2
6 6 H 1.08995 * 109.47171 * 55.00116 * 5 4 3
7 7 C 1.52998 * 109.47098 * 175.00226 * 5 4 3
8 8 N 1.46502 * 109.47312 * 175.00228 * 7 5 4
9 9 C 1.36935 * 120.00162 * 179.97438 * 8 7 5
10 10 H 1.07997 * 120.00497 * 0.02562 * 9 8 7
11 11 C 1.38810 * 120.00035 * 179.97438 * 9 8 7
12 12 N 1.31617 * 120.00205 * 180.02562 * 11 9 8
13 13 Si 1.86803 * 119.99880 * 0.02562 * 11 9 8
14 14 H 1.48496 * 109.47166 * 89.99891 * 13 11 9
15 15 H 1.48502 * 109.47224 * 209.99691 * 13 11 9
16 16 H 1.48497 * 109.47229 * 329.99605 * 13 11 9
17 17 N 1.46501 * 109.47270 * 295.00109 * 5 4 3
18 18 C 1.34777 * 120.00180 * 84.99729 * 17 5 4
19 19 O 1.21531 * 119.99805 * 0.02562 * 18 17 5
20 20 C 1.47999 * 120.00075 * 179.97438 * 18 17 5
21 21 C 1.39872 * 120.46076 * 179.97438 * 20 18 17
22 22 C 1.38454 * 118.35544 * 180.02562 * 21 20 18
23 23 C 1.39295 * 119.19150 * 0.02562 * 22 21 20
24 24 C 1.48340 * 119.57362 * 180.02562 * 23 22 21
25 25 N 1.34775 * 120.00219 * 179.97438 * 24 23 22
26 26 O 1.21494 * 119.99687 * 359.97438 * 24 23 22
27 27 N 1.32714 * 120.85766 * 359.97438 * 23 22 21
28 28 C 1.31415 * 121.80348 * 0.02562 * 27 23 22
29 29 H 1.08995 * 109.47326 * 300.00211 * 1 2 3
30 30 H 1.09008 * 109.46850 * 60.00459 * 1 2 3
31 31 H 1.08993 * 109.47258 * 179.97438 * 1 2 3
32 32 H 1.08995 * 109.47326 * 239.99789 * 2 1 3
33 33 H 1.08994 * 109.46757 * 119.99509 * 2 1 3
34 34 H 1.09006 * 109.46855 * 59.99369 * 3 2 1
35 35 H 1.09000 * 109.46839 * 299.99869 * 3 2 1
36 36 H 1.09012 * 109.47144 * 59.99731 * 4 3 2
37 37 H 1.09001 * 109.47151 * 300.00376 * 4 3 2
38 38 H 1.09004 * 109.47541 * 294.99916 * 7 5 4
39 39 H 1.09003 * 109.47434 * 54.99914 * 7 5 4
40 40 H 0.97003 * 119.99938 * 359.97438 * 8 7 5
41 41 H 0.96998 * 119.99963 * 180.02562 * 12 11 9
42 42 H 0.97003 * 120.00195 * 265.00296 * 17 5 4
43 43 H 1.07996 * 120.82109 * 0.02562 * 21 20 18
44 44 H 1.08003 * 120.39925 * 180.02562 * 22 21 20
45 45 H 0.97003 * 120.00046 * 359.97438 * 25 24 23
46 46 H 0.96995 * 120.00039 * 180.02562 * 25 24 23
47 47 H 1.08004 * 119.64552 * 180.02562 * 28 27 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 3.5700 1.4426 0.0006
5 6 4.0799 2.8850 0.0000
6 1 3.6450 3.4246 0.8413
7 6 5.6047 2.8869 0.1263
8 7 6.1030 4.2593 0.0060
9 6 7.4468 4.5096 0.0886
10 1 8.1394 3.6952 0.2420
11 6 7.9190 5.8099 -0.0260
12 7 9.2106 6.0504 0.0529
13 14 6.7212 7.2184 -0.2920
14 1 6.2887 7.7555 1.0231
15 1 7.3864 8.2935 -1.0712
16 1 5.5363 6.7261 -1.0396
17 7 3.6929 3.5393 -1.2523
18 6 2.4756 4.1061 -1.3684
19 8 1.6992 4.0749 -0.4339
20 6 2.0849 4.7676 -2.6333
21 6 0.8239 5.3584 -2.7645
22 6 0.5036 5.9648 -3.9673
23 6 1.4403 5.9656 -4.9983
24 6 1.1063 6.6133 -6.2903
25 7 2.0063 6.6196 -7.2935
26 8 0.0215 7.1381 -6.4442
27 7 2.6281 5.3952 -4.8393
28 6 2.9701 4.8096 -3.7136
29 1 -0.3634 0.5138 0.8899
30 1 -0.3633 0.5138 -0.8901
31 1 -0.3633 -1.0276 -0.0005
32 1 1.8934 -0.5138 -0.8899
33 1 1.8933 -0.5137 0.8900
34 1 1.6766 1.9564 0.8900
35 1 1.6767 1.9563 -0.8900
36 1 3.9337 0.9285 -0.8892
37 1 3.9329 0.9288 0.8908
38 1 5.8895 2.4809 1.0970
39 1 6.0356 2.2732 -0.6648
40 1 5.4811 4.9908 -0.1322
41 1 9.5404 6.9590 -0.0268
42 1 4.3127 3.5645 -1.9981
43 1 0.1175 5.3420 -1.9477
44 1 -0.4607 6.4315 -4.1044
45 1 2.8726 6.2008 -7.1706
46 1 1.7881 7.0434 -8.1382
47 1 3.9462 4.3567 -3.6222
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001734101076.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:49:55
Heat of formation + Delta-G solvation = -65.234996 kcal
Electronic energy + Delta-G solvation = -28807.345965 eV
Core-core repulsion = 24795.782091 eV
Total energy + Delta-G solvation = -4011.563874 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 334.179 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-42.06836 -40.96676 -39.74414 -37.99959 -36.33179 -35.24363 -35.00775 -33.64574
-33.54214 -32.76978 -31.50958 -29.00436 -26.81515 -25.62931 -24.82261 -23.53996
-23.10990 -22.02799 -21.78380 -21.47815 -19.91769 -19.43865 -18.80719 -18.27796
-17.62940 -17.01030 -16.74010 -16.43485 -16.28760 -16.11789 -15.97639 -15.82619
-15.51109 -14.98659 -14.83704 -14.65078 -14.52819 -14.35725 -14.23651 -13.92189
-13.87976 -13.63411 -13.27500 -12.96266 -12.91951 -12.58934 -12.13007 -11.96089
-11.87402 -11.83223 -11.72238 -11.45436 -11.40009 -11.27085 -11.16878 -11.02428
-10.83337 -10.72440 -10.47138 -10.03262 -9.30677 -8.02771 -5.35584 -0.94850
-0.02130 1.22795 1.33566 1.37942 1.43809 1.93374 2.01138 2.20214
2.45695 2.69515 2.96589 3.30231 3.43006 3.52684 3.61431 3.74138
3.78415 3.89443 3.96891 4.09741 4.15056 4.31218 4.34656 4.47515
4.53546 4.61352 4.74994 4.82264 4.85228 4.94569 4.95535 5.01076
5.09293 5.15396 5.22158 5.22906 5.34786 5.39782 5.54927 5.61687
5.70817 5.77987 6.13961 6.20905 6.42072 6.48390 7.07183 7.08453
7.11858 7.83249 8.00636 9.18624
Molecular weight = 334.18amu
Principal moments of inertia in cm(-1)
A = 0.006711 B = 0.004563 C = 0.002930
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4171.421372 B = 6135.470679 C = 9553.217291
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.122 4.122
3 C -0.106 4.106
4 C -0.119 4.119
5 C 0.145 3.855
6 H 0.073 0.927
7 C 0.147 3.853
8 N -0.757 5.757
9 C -0.227 4.227
10 H 0.065 0.935
11 C -0.055 4.055
12 N -0.981 5.981
13 Si 0.943 3.057
14 H -0.289 1.289
15 H -0.297 1.297
16 H -0.252 1.252
17 N -0.703 5.703
18 C 0.561 3.439
19 O -0.551 6.551
20 C -0.167 4.167
21 C -0.020 4.020
22 C -0.116 4.116
23 C 0.081 3.919
24 C 0.576 3.424
25 N -0.813 5.813
26 O -0.568 6.568
27 N -0.460 5.460
28 C 0.134 3.866
29 H 0.047 0.953
30 H 0.046 0.954
31 H 0.062 0.938
32 H 0.064 0.936
33 H 0.066 0.934
34 H 0.048 0.952
35 H 0.050 0.950
36 H 0.079 0.921
37 H 0.085 0.915
38 H 0.045 0.955
39 H 0.048 0.952
40 H 0.364 0.636
41 H 0.257 0.743
42 H 0.410 0.590
43 H 0.165 0.835
44 H 0.166 0.834
45 H 0.422 0.578
46 H 0.417 0.583
47 H 0.186 0.814
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.586 -8.252 -10.700 22.979
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.160 4.160
3 C -0.143 4.143
4 C -0.158 4.158
5 C 0.041 3.959
6 H 0.091 0.909
7 C 0.021 3.979
8 N -0.403 5.403
9 C -0.358 4.358
10 H 0.083 0.917
11 C -0.247 4.247
12 N -0.631 5.631
13 Si 0.772 3.228
14 H -0.216 1.216
15 H -0.224 1.224
16 H -0.177 1.177
17 N -0.354 5.354
18 C 0.347 3.653
19 O -0.430 6.430
20 C -0.173 4.173
21 C -0.046 4.046
22 C -0.137 4.137
23 C -0.057 4.057
24 C 0.359 3.641
25 N -0.377 5.377
26 O -0.446 6.446
27 N -0.171 5.171
28 C -0.027 4.027
29 H 0.067 0.933
30 H 0.065 0.935
31 H 0.081 0.919
32 H 0.083 0.917
33 H 0.084 0.916
34 H 0.067 0.933
35 H 0.069 0.931
36 H 0.098 0.902
37 H 0.104 0.896
38 H 0.063 0.937
39 H 0.066 0.934
40 H 0.197 0.803
41 H 0.066 0.934
42 H 0.247 0.753
43 H 0.182 0.818
44 H 0.184 0.816
45 H 0.254 0.746
46 H 0.250 0.750
47 H 0.202 0.798
Dipole moment (debyes) X Y Z Total
from point charges -19.033 -8.046 -10.675 23.258
hybrid contribution -0.001 1.265 0.192 1.279
sum -19.034 -6.782 -10.482 22.763
Atomic orbital electron populations
1.21741 0.95975 1.01705 1.01303 1.21545 0.95889 0.96312 1.02243
1.21566 0.94671 0.96499 1.01599 1.21928 0.95940 0.94040 1.03894
1.21256 0.93966 0.94517 0.86198 0.90891 1.21135 0.90734 0.85835
1.00225 1.42695 1.03553 1.04762 1.89247 1.19036 0.83732 0.93310
1.39762 0.91716 1.25335 0.96857 0.99544 1.02951 1.69852 1.13616
1.20313 1.59354 0.85596 0.79415 0.80028 0.77783 1.21609 1.22355
1.17651 1.45934 1.15667 1.56417 1.17415 1.18102 0.82101 0.78124
0.86961 1.90778 1.51921 1.59910 1.40425 1.21260 0.97342 1.02863
0.95800 1.21922 0.94841 0.90358 0.97519 1.22249 1.01577 0.98023
0.91832 1.21426 0.91248 0.97640 0.95347 1.17913 0.83926 0.78566
0.83693 1.43537 1.19247 1.59058 1.15864 1.90822 1.24205 1.47189
1.82417 1.67546 1.16749 1.07950 1.24904 1.23289 0.99466 0.93227
0.86669 0.93335 0.93526 0.91863 0.91699 0.91566 0.93328 0.93116
0.90201 0.89644 0.93690 0.93368 0.80301 0.93405 0.75274 0.81763
0.81613 0.74636 0.74995 0.79757
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.58 9.91 71.98 0.71 -1.87 16
2 C -0.12 -2.17 5.93 30.60 0.18 -1.98 16
3 C -0.11 -2.30 3.82 30.59 0.12 -2.18 16
4 C -0.12 -2.46 4.89 30.59 0.15 -2.31 16
5 C 0.15 3.80 2.42 44.99 0.11 3.91 16
6 H 0.07 2.22 7.58 -2.39 -0.02 2.20 16
7 C 0.15 4.69 5.82 86.38 0.50 5.19 16
8 N -0.76 -31.90 5.24 -343.45 -1.80 -33.70 16
9 C -0.23 -12.11 10.47 84.03 0.88 -11.23 16
10 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16
11 C -0.05 -3.11 5.50 84.86 0.47 -2.64 16
12 N -0.98 -60.88 13.97 21.65 0.30 -60.58 16
13 Si 0.94 44.40 27.74 68.60 1.90 46.30 16
14 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16
15 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16
16 H -0.25 -10.54 6.52 99.48 0.65 -9.89 16
17 N -0.70 -17.10 4.42 -445.28 -1.97 -19.07 16
18 C 0.56 14.42 6.35 86.83 0.55 14.97 16
19 O -0.55 -16.77 13.55 -3.81 -0.05 -16.83 16
20 C -0.17 -3.71 5.90 -19.93 -0.12 -3.83 16
21 C -0.02 -0.40 9.71 22.72 0.22 -0.18 16
22 C -0.12 -2.28 9.62 22.58 0.22 -2.06 16
23 C 0.08 1.70 6.75 41.96 0.28 1.99 16
24 C 0.58 11.99 8.09 86.93 0.70 12.70 16
25 N -0.81 -10.97 8.86 -175.26 -1.55 -12.53 16
26 O -0.57 -15.17 17.15 -3.70 -0.06 -15.23 16
27 N -0.46 -9.39 9.52 -183.90 -1.75 -11.14 16
28 C 0.13 2.71 10.71 85.12 0.91 3.63 16
29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16
30 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16
31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16
33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16
34 H 0.05 1.24 7.85 -2.38 -0.02 1.22 16
35 H 0.05 1.23 5.64 -2.39 -0.01 1.21 16
36 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16
37 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16
38 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16
39 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16
40 H 0.36 15.16 5.20 -92.71 -0.48 14.68 16
41 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16
42 H 0.41 8.87 6.66 -92.71 -0.62 8.25 16
43 H 0.16 3.01 7.73 -2.91 -0.02 2.99 16
44 H 0.17 2.86 7.63 -2.91 -0.02 2.83 16
45 H 0.42 4.64 8.15 -92.71 -0.76 3.88 16
46 H 0.42 3.97 8.93 -92.71 -0.83 3.14 16
47 H 0.19 3.02 6.41 -2.91 -0.02 3.00 16
Total: -1.00 -72.09 388.48 -0.80 -72.89
By element:
Atomic # 1 Polarization: 37.48 SS G_CDS: -1.70 Total: 35.77 kcal
Atomic # 6 Polarization: 8.21 SS G_CDS: 5.89 Total: 14.10 kcal
Atomic # 7 Polarization: -130.24 SS G_CDS: -6.77 Total: -137.01 kcal
Atomic # 8 Polarization: -31.94 SS G_CDS: -0.12 Total: -32.05 kcal
Atomic # 14 Polarization: 44.40 SS G_CDS: 1.90 Total: 46.30 kcal
Total: -72.09 -0.80 -72.89 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001734101076.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.656 kcal
(2) G-P(sol) polarization free energy of solvation -72.093 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.438 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.797 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.891 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.235 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds