Wall clock time and date at job start Tue Mar 31 2020 19:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47108 * 2 1 4 4 H 1.08997 * 109.47037 * 306.29248 * 3 2 1 5 5 C 1.52998 * 109.47048 * 186.29688 * 3 2 1 6 6 N 1.46496 * 109.47013 * 184.99759 * 5 3 2 7 7 C 1.34780 * 120.00213 * 179.97438 * 6 5 3 8 8 O 1.21516 * 119.99971 * 0.02562 * 7 6 5 9 9 C 1.48167 * 120.00313 * 180.02562 * 7 6 5 10 10 N 1.32750 * 119.72104 * 354.03646 * 9 7 6 11 11 C 1.31494 * 121.63893 * 179.97438 * 10 9 7 12 12 C 1.38603 * 120.90371 * 0.02562 * 11 10 9 13 13 C 1.38573 * 119.35136 * 359.95539 * 12 11 10 14 14 C 1.38636 * 118.49328 * 0.04309 * 13 12 11 15 15 C 1.50696 * 120.47482 * 180.25272 * 14 13 12 16 16 N 1.46892 * 109.47287 * 66.29491 * 3 2 1 17 17 C 1.46903 * 111.00141 * 62.94678 * 16 3 2 18 18 C 1.50703 * 109.47460 * 182.14465 * 17 16 3 19 19 O 1.21289 * 119.99718 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99791 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99363 * 180.02562 * 20 18 17 22 22 H 1.07993 * 120.00089 * 0.02562 * 21 20 18 23 23 C 1.38951 * 119.99629 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99873 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47028 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47270 * 119.99483 * 25 23 21 28 28 H 1.48492 * 109.47357 * 239.99823 * 25 23 21 29 29 H 1.09001 * 109.47784 * 62.10055 * 1 2 3 30 30 H 1.08997 * 109.47038 * 182.10670 * 1 2 3 31 31 H 1.09009 * 109.47068 * 302.10152 * 1 2 3 32 32 H 1.09000 * 109.46988 * 240.00312 * 2 1 3 33 33 H 1.09002 * 109.47551 * 120.00095 * 2 1 3 34 34 H 1.09000 * 109.47152 * 65.00152 * 5 3 2 35 35 H 1.08998 * 109.47187 * 304.99639 * 5 3 2 36 36 H 0.96995 * 120.00409 * 0.02562 * 6 5 3 37 37 H 1.08002 * 119.54432 * 179.97438 * 11 10 9 38 38 H 1.08001 * 120.32032 * 179.97438 * 12 11 10 39 39 H 1.08002 * 120.75677 * 180.02562 * 13 12 11 40 40 H 1.09003 * 109.47134 * 263.65532 * 15 14 13 41 41 H 1.09009 * 109.46784 * 23.65003 * 15 14 13 42 42 H 1.08995 * 109.47404 * 143.65374 * 15 14 13 43 43 H 1.00907 * 111.00101 * 298.99608 * 16 3 2 44 44 H 1.09006 * 109.47102 * 302.14828 * 17 16 3 45 45 H 1.08997 * 109.46819 * 62.14519 * 17 16 3 46 46 H 0.97001 * 120.00221 * 0.02562 * 20 18 17 47 47 H 0.97000 * 119.99568 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5876 1.9878 -0.8283 5 6 3.5617 1.4454 -0.1582 6 7 4.0625 2.8170 -0.0388 7 6 5.3832 3.0639 -0.1450 8 8 6.1586 2.1488 -0.3403 9 6 5.8897 4.4510 -0.0237 10 7 5.0314 5.4592 0.0705 11 6 5.4393 6.7044 0.1802 12 6 6.7907 7.0116 0.2010 13 6 7.7212 5.9892 0.1056 14 6 7.2624 4.6860 -0.0090 15 6 8.2351 3.5394 -0.1100 16 7 1.6783 2.0898 1.2680 17 6 2.3282 1.4224 2.4040 18 6 1.8931 2.0793 3.6886 19 8 1.1175 3.0114 3.6607 20 7 2.3650 1.6304 4.8685 21 6 1.9687 2.2277 6.0372 22 1 1.2782 3.0576 6.0123 23 6 2.4557 1.7652 7.2536 24 7 3.2956 0.7550 7.2838 25 14 1.9153 2.5786 8.8461 26 1 0.9722 3.6845 8.5418 27 1 1.2412 1.5762 9.7099 28 1 3.1031 3.1218 9.5523 29 1 -0.3635 0.4809 -0.9082 30 1 -0.3633 -1.0269 0.0378 31 1 -0.3634 0.5462 0.8706 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8260 1.0462 -1.1374 35 1 4.0091 0.8263 0.6194 36 1 3.4437 3.5473 0.1174 37 1 4.7113 7.4988 0.2542 38 1 7.1153 8.0377 0.2910 39 1 8.7798 6.2027 0.1199 40 1 8.3828 3.2794 -1.1582 41 1 9.1887 3.8322 0.3296 42 1 7.8375 2.6774 0.4256 43 1 0.6767 2.1151 1.3884 44 1 2.0429 0.3704 2.4190 45 1 3.4103 1.5040 2.3025 46 1 2.9850 0.8847 4.8908 47 1 3.6352 0.4319 8.1331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753470142.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:22 Heat of formation + Delta-G solvation = -38.421082 kcal Electronic energy + Delta-G solvation = -28831.592449 eV Core-core repulsion = 24821.191314 eV Total energy + Delta-G solvation = -4010.401135 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.80997 -39.27248 -38.42337 -37.23332 -34.46992 -33.90551 -33.29963 -32.17762 -31.78499 -31.14872 -28.87952 -27.43081 -26.51104 -24.82407 -24.16864 -23.21929 -22.20285 -20.65617 -20.27250 -19.15413 -18.02573 -17.79905 -16.88983 -16.78013 -15.84675 -15.60738 -15.48420 -15.26960 -14.94488 -14.76466 -14.27862 -14.13742 -14.02983 -13.74425 -13.59136 -13.42648 -13.28600 -13.08903 -12.78757 -12.52342 -12.42136 -12.24266 -12.10476 -11.91350 -11.75496 -11.49135 -11.28322 -11.07388 -10.81154 -10.76894 -10.33523 -10.20788 -10.08703 -9.95667 -9.50201 -9.45032 -9.21083 -8.81705 -8.44178 -8.07090 -7.93967 -6.39945 -3.80673 0.55937 1.05991 2.75749 3.15593 3.17147 3.27524 3.34785 3.77822 3.92896 4.08082 4.15057 4.38493 4.59481 4.64075 4.66514 4.76979 4.79510 4.93249 5.02121 5.17561 5.21841 5.27002 5.31309 5.39672 5.44930 5.53916 5.61018 5.63657 5.67553 5.79967 5.83018 5.85681 5.91950 5.99082 6.02131 6.13056 6.18779 6.24873 6.29868 6.46182 6.60284 7.19522 7.50134 7.56926 7.64548 7.81022 8.08239 8.28841 8.62946 9.19672 9.56428 10.07657 10.77891 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008126 B = 0.003537 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3444.992640 B = 7915.477757 C =10030.872050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.091 0.909 5 C 0.124 3.876 6 N -0.692 5.692 7 C 0.567 3.433 8 O -0.538 6.538 9 C 0.075 3.925 10 N -0.448 5.448 11 C 0.091 3.909 12 C -0.148 4.148 13 C -0.089 4.089 14 C -0.075 4.075 15 C -0.117 4.117 16 N -0.659 5.659 17 C 0.043 3.957 18 C 0.442 3.558 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.421 0.579 37 H 0.163 0.837 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.101 0.899 43 H 0.354 0.646 44 H 0.048 0.952 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.195 4.563 -18.015 19.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.038 4.038 4 H 0.109 0.891 5 C 0.000 4.000 6 N -0.344 5.344 7 C 0.353 3.647 8 O -0.416 6.416 9 C -0.063 4.063 10 N -0.159 5.159 11 C -0.069 4.069 12 C -0.168 4.168 13 C -0.115 4.115 14 C -0.078 4.078 15 C -0.173 4.173 16 N -0.292 5.292 17 C -0.089 4.089 18 C 0.227 3.773 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.260 0.740 37 H 0.180 0.820 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.119 0.881 43 H 0.176 0.824 44 H 0.066 0.934 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.842 4.713 -18.059 19.557 hybrid contribution 0.297 -0.278 1.145 1.215 sum 6.139 4.435 -16.914 18.532 Atomic orbital electron populations 1.21756 0.95228 1.01944 1.02077 1.22206 0.96835 0.97960 1.03015 1.21928 0.94207 0.93582 0.94045 0.89123 1.21482 0.93150 0.83521 1.01887 1.45706 1.07323 1.10633 1.70704 1.17859 0.82724 0.86834 0.77316 1.90714 1.55742 1.45078 1.50084 1.21012 0.90179 0.93433 1.01721 1.67572 1.38889 1.00159 1.09262 1.22798 0.94566 0.93299 0.96220 1.22369 0.94516 1.00641 0.99229 1.21538 1.00627 0.91656 0.97691 1.20952 0.94549 0.96269 0.96023 1.21059 0.96163 0.96696 1.03432 1.60299 1.15694 1.53545 0.99668 1.21775 1.00260 0.96094 0.90785 1.19806 0.85924 0.86993 0.84554 1.90518 1.38569 1.30848 1.86848 1.41866 1.41694 1.31671 1.04809 1.19745 1.25443 1.14879 0.82713 0.87896 1.25258 0.96552 0.96563 0.99581 1.69627 1.31658 1.25636 1.27352 0.85815 0.78453 0.79058 0.81110 1.19221 1.20769 1.20772 0.92562 0.92536 0.92345 0.91302 0.91045 0.91081 0.91123 0.74037 0.82021 0.84309 0.84269 0.90521 0.92277 0.88104 0.82427 0.93425 0.89633 0.77528 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.75 37.16 0.36 -1.16 16 2 C -0.16 -1.65 5.28 -26.73 -0.14 -1.79 16 3 C 0.07 0.85 2.70 -67.72 -0.18 0.66 16 4 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 5 C 0.12 1.55 4.54 -4.04 -0.02 1.53 16 6 N -0.69 -9.76 5.38 -61.15 -0.33 -10.09 16 7 C 0.57 8.65 7.75 -12.18 -0.09 8.55 16 8 O -0.54 -8.85 13.31 5.35 0.07 -8.77 16 9 C 0.07 1.06 6.75 -83.01 -0.56 0.50 16 10 N -0.45 -6.16 9.56 -9.80 -0.09 -6.26 16 11 C 0.09 0.98 11.18 -17.56 -0.20 0.78 16 12 C -0.15 -1.31 10.11 -39.32 -0.40 -1.71 16 13 C -0.09 -0.86 9.83 -39.31 -0.39 -1.24 16 14 C -0.07 -0.92 5.93 -104.09 -0.62 -1.54 16 15 C -0.12 -1.32 8.75 36.00 0.32 -1.00 16 16 N -0.66 -10.01 5.54 -107.99 -0.60 -10.60 16 17 C 0.04 0.76 5.37 -4.97 -0.03 0.74 16 18 C 0.44 10.47 7.81 -10.98 -0.09 10.39 16 19 O -0.58 -15.74 15.73 5.55 0.09 -15.65 16 20 N -0.56 -14.50 5.29 -10.96 -0.06 -14.56 16 21 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 22 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.87 13.05 55.50 0.72 -24.15 16 25 Si 0.93 21.28 29.55 -169.99 -5.02 16.25 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.67 6.74 -51.92 -0.35 0.32 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.81 6.13 -51.93 -0.32 0.50 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.97 6.70 -51.93 -0.35 0.62 16 36 H 0.42 6.17 7.48 -40.82 -0.31 5.86 16 37 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.53 8.06 -51.92 -0.42 0.11 16 42 H 0.10 1.38 5.82 -51.93 -0.30 1.07 16 43 H 0.35 5.61 6.79 -39.29 -0.27 5.34 16 44 H 0.05 0.77 6.15 -51.93 -0.32 0.45 16 45 H 0.09 1.51 6.49 -51.93 -0.34 1.18 16 46 H 0.39 9.75 7.90 -40.82 -0.32 9.42 16 47 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 386.43 15.07 5.82 5.82 Total: -1.00 -33.03 386.43 -8.27 -41.30 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -6.60 Total: 20.06 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -2.27 Total: 6.65 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -0.35 Total: -65.66 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: 0.16 Total: -24.43 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.03 -8.27 -41.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753470142.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.879 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds