Wall clock time and date at job start Tue Mar 31 2020 19:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47108 * 2 1 4 4 H 1.08997 * 109.47037 * 306.29248 * 3 2 1 5 5 C 1.52998 * 109.47048 * 186.29688 * 3 2 1 6 6 N 1.46496 * 109.47013 * 184.99759 * 5 3 2 7 7 C 1.34780 * 120.00213 * 179.97438 * 6 5 3 8 8 O 1.21516 * 119.99971 * 0.02562 * 7 6 5 9 9 C 1.48167 * 120.00313 * 180.02562 * 7 6 5 10 10 N 1.32750 * 119.72104 * 354.03646 * 9 7 6 11 11 C 1.31494 * 121.63893 * 179.97438 * 10 9 7 12 12 C 1.38603 * 120.90371 * 0.02562 * 11 10 9 13 13 C 1.38573 * 119.35136 * 359.95539 * 12 11 10 14 14 C 1.38636 * 118.49328 * 0.04309 * 13 12 11 15 15 C 1.50696 * 120.47482 * 180.25272 * 14 13 12 16 16 N 1.46892 * 109.47287 * 66.29491 * 3 2 1 17 17 C 1.46903 * 111.00141 * 62.94678 * 16 3 2 18 18 C 1.50703 * 109.47460 * 182.14465 * 17 16 3 19 19 O 1.21289 * 119.99718 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99791 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99363 * 180.02562 * 20 18 17 22 22 H 1.07993 * 120.00089 * 0.02562 * 21 20 18 23 23 C 1.38951 * 119.99629 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99873 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47028 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47270 * 119.99483 * 25 23 21 28 28 H 1.48492 * 109.47357 * 239.99823 * 25 23 21 29 29 H 1.09001 * 109.47784 * 62.10055 * 1 2 3 30 30 H 1.08997 * 109.47038 * 182.10670 * 1 2 3 31 31 H 1.09009 * 109.47068 * 302.10152 * 1 2 3 32 32 H 1.09000 * 109.46988 * 240.00312 * 2 1 3 33 33 H 1.09002 * 109.47551 * 120.00095 * 2 1 3 34 34 H 1.09000 * 109.47152 * 65.00152 * 5 3 2 35 35 H 1.08998 * 109.47187 * 304.99639 * 5 3 2 36 36 H 0.96995 * 120.00409 * 0.02562 * 6 5 3 37 37 H 1.08002 * 119.54432 * 179.97438 * 11 10 9 38 38 H 1.08001 * 120.32032 * 179.97438 * 12 11 10 39 39 H 1.08002 * 120.75677 * 180.02562 * 13 12 11 40 40 H 1.09003 * 109.47134 * 263.65532 * 15 14 13 41 41 H 1.09009 * 109.46784 * 23.65003 * 15 14 13 42 42 H 1.08995 * 109.47404 * 143.65374 * 15 14 13 43 43 H 1.00907 * 111.00101 * 298.99608 * 16 3 2 44 44 H 1.09006 * 109.47102 * 302.14828 * 17 16 3 45 45 H 1.08997 * 109.46819 * 62.14519 * 17 16 3 46 46 H 0.97001 * 120.00221 * 0.02562 * 20 18 17 47 47 H 0.97000 * 119.99568 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5876 1.9878 -0.8283 5 6 3.5617 1.4454 -0.1582 6 7 4.0625 2.8170 -0.0388 7 6 5.3832 3.0639 -0.1450 8 8 6.1586 2.1488 -0.3403 9 6 5.8897 4.4510 -0.0237 10 7 5.0314 5.4592 0.0705 11 6 5.4393 6.7044 0.1802 12 6 6.7907 7.0116 0.2010 13 6 7.7212 5.9892 0.1056 14 6 7.2624 4.6860 -0.0090 15 6 8.2351 3.5394 -0.1100 16 7 1.6783 2.0898 1.2680 17 6 2.3282 1.4224 2.4040 18 6 1.8931 2.0793 3.6886 19 8 1.1175 3.0114 3.6607 20 7 2.3650 1.6304 4.8685 21 6 1.9687 2.2277 6.0372 22 1 1.2782 3.0576 6.0123 23 6 2.4557 1.7652 7.2536 24 7 3.2956 0.7550 7.2838 25 14 1.9153 2.5786 8.8461 26 1 0.9722 3.6845 8.5418 27 1 1.2412 1.5762 9.7099 28 1 3.1031 3.1218 9.5523 29 1 -0.3635 0.4809 -0.9082 30 1 -0.3633 -1.0269 0.0378 31 1 -0.3634 0.5462 0.8706 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8260 1.0462 -1.1374 35 1 4.0091 0.8263 0.6194 36 1 3.4437 3.5473 0.1174 37 1 4.7113 7.4988 0.2542 38 1 7.1153 8.0377 0.2910 39 1 8.7798 6.2027 0.1199 40 1 8.3828 3.2794 -1.1582 41 1 9.1887 3.8322 0.3296 42 1 7.8375 2.6774 0.4256 43 1 0.6767 2.1151 1.3884 44 1 2.0429 0.3704 2.4190 45 1 3.4103 1.5040 2.3025 46 1 2.9850 0.8847 4.8908 47 1 3.6352 0.4319 8.1331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753470142.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:20 Heat of formation + Delta-G solvation = -63.558438 kcal Electronic energy + Delta-G solvation = -28832.682487 eV Core-core repulsion = 24821.191314 eV Total energy + Delta-G solvation = -4011.491173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.75017 -40.53592 -39.87103 -38.61093 -35.99936 -35.45192 -34.24288 -33.34373 -33.01044 -32.82703 -29.93391 -28.50778 -27.91249 -26.16888 -25.56735 -24.11212 -23.03775 -21.83345 -21.52794 -20.68093 -19.92444 -18.90636 -18.35695 -17.78965 -17.08063 -16.71006 -16.60551 -16.50306 -16.33057 -15.95094 -15.82792 -15.67874 -15.25476 -14.93059 -14.80412 -14.53378 -14.22550 -14.03498 -13.99417 -13.67283 -13.58077 -13.54520 -13.28642 -13.23976 -12.93830 -12.90890 -12.71355 -12.42115 -12.24637 -12.12678 -11.84498 -11.69196 -11.52267 -11.07823 -10.76259 -10.40370 -10.36134 -10.19740 -10.03252 -9.81490 -9.34409 -8.48114 -5.97179 -0.32255 0.25593 1.35084 1.40045 1.54688 1.73632 2.02806 2.13660 2.27983 2.86712 2.93163 3.18870 3.22204 3.50444 3.69664 3.78715 3.86650 3.97081 4.03782 4.06185 4.14266 4.26430 4.33312 4.44880 4.48339 4.52945 4.55857 4.58425 4.71348 4.78450 4.79321 4.80457 4.92810 5.10066 5.10682 5.16606 5.25054 5.30869 5.37517 5.39356 5.50718 5.70668 5.86849 6.07388 6.38507 6.47198 6.57388 6.84945 7.10622 7.18030 7.53629 8.08369 8.69704 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008126 B = 0.003537 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3444.992640 B = 7915.477757 C =10030.872050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.155 4.155 3 C 0.082 3.918 4 H 0.109 0.891 5 C 0.123 3.877 6 N -0.693 5.693 7 C 0.559 3.441 8 O -0.560 6.560 9 C 0.039 3.961 10 N -0.477 5.477 11 C 0.076 3.924 12 C -0.132 4.132 13 C -0.088 4.088 14 C -0.089 4.089 15 C -0.111 4.111 16 N -0.666 5.666 17 C 0.064 3.936 18 C 0.439 3.561 19 O -0.618 6.618 20 N -0.574 5.574 21 C -0.333 4.333 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.269 1.269 28 H -0.272 1.272 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.418 0.582 37 H 0.185 0.815 38 H 0.180 0.820 39 H 0.174 0.826 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.352 0.648 44 H 0.068 0.932 45 H 0.086 0.914 46 H 0.394 0.606 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.978 5.556 -18.559 20.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.194 4.194 3 C -0.028 4.028 4 H 0.127 0.873 5 C -0.001 4.001 6 N -0.343 5.343 7 C 0.345 3.655 8 O -0.440 6.440 9 C -0.097 4.097 10 N -0.188 5.188 11 C -0.084 4.084 12 C -0.151 4.151 13 C -0.113 4.113 14 C -0.093 4.093 15 C -0.168 4.168 16 N -0.300 5.300 17 C -0.068 4.068 18 C 0.227 3.773 19 O -0.505 6.505 20 N -0.211 5.211 21 C -0.462 4.462 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.194 1.194 28 H -0.197 1.197 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.255 0.745 37 H 0.202 0.798 38 H 0.197 0.803 39 H 0.191 0.809 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.173 0.827 44 H 0.086 0.914 45 H 0.104 0.896 46 H 0.227 0.773 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.630 5.673 -18.625 20.568 hybrid contribution 0.070 -0.505 1.247 1.347 sum 6.700 5.168 -17.378 19.329 Atomic orbital electron populations 1.21745 0.94818 1.02329 1.01932 1.22157 0.97061 0.96701 1.03522 1.21977 0.93615 0.94668 0.92499 0.87295 1.21569 0.93546 0.82751 1.02189 1.45767 1.07088 1.11019 1.70398 1.18221 0.82841 0.87508 0.76955 1.90690 1.56151 1.45904 1.51262 1.20994 0.91295 0.93052 1.04392 1.67505 1.39642 1.01236 1.10405 1.23373 0.96446 0.92812 0.95799 1.22814 0.93403 1.02439 0.96489 1.21971 1.02577 0.90469 0.96318 1.21197 0.93907 0.97856 0.96309 1.20967 0.96951 0.95585 1.03251 1.60267 1.15333 1.54294 1.00121 1.21518 1.00190 0.96564 0.88566 1.20816 0.84509 0.86221 0.85796 1.90484 1.39923 1.32401 1.87652 1.41948 1.42179 1.31940 1.05071 1.19715 1.26585 1.15489 0.84431 0.90203 1.26065 0.96145 0.96869 1.02241 1.69693 1.31880 1.26183 1.28529 0.84864 0.78232 0.78153 0.77051 1.19635 1.19449 1.19702 0.91135 0.91767 0.94195 0.89093 0.92200 0.89600 0.92506 0.74452 0.79783 0.80273 0.80891 0.90440 0.89799 0.90977 0.82710 0.91425 0.89587 0.77293 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.75 71.98 0.70 -2.08 16 2 C -0.15 -2.94 5.28 30.59 0.16 -2.78 16 3 C 0.08 1.83 2.70 44.92 0.12 1.95 16 4 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 5 C 0.12 3.06 4.54 86.38 0.39 3.45 16 6 N -0.69 -20.01 5.38 -465.67 -2.50 -22.52 16 7 C 0.56 17.70 7.75 86.88 0.67 18.37 16 8 O -0.56 -19.22 13.31 -3.77 -0.05 -19.27 16 9 C 0.04 1.15 6.75 41.89 0.28 1.43 16 10 N -0.48 -13.20 9.56 -184.91 -1.77 -14.97 16 11 C 0.08 1.53 11.18 84.83 0.95 2.48 16 12 C -0.13 -1.95 10.11 22.44 0.23 -1.73 16 13 C -0.09 -1.47 9.83 22.44 0.22 -1.25 16 14 C -0.09 -2.15 5.93 -19.52 -0.12 -2.27 16 15 C -0.11 -2.49 8.75 71.23 0.62 -1.87 16 16 N -0.67 -20.28 5.54 -495.58 -2.75 -23.03 16 17 C 0.06 2.29 5.37 85.56 0.46 2.75 16 18 C 0.44 21.42 7.81 87.66 0.69 22.11 16 19 O -0.62 -34.43 15.73 -3.06 -0.05 -34.48 16 20 N -0.57 -30.45 5.29 -306.99 -1.62 -32.07 16 21 C -0.33 -19.30 9.68 84.04 0.81 -18.49 16 22 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 23 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 24 N -0.92 -50.94 13.05 21.66 0.28 -50.66 16 25 Si 0.99 43.62 29.55 68.60 2.03 45.64 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.04 0.88 6.74 -2.38 -0.02 0.87 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.29 6.13 -2.39 -0.01 1.28 16 34 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 1.57 6.70 -2.39 -0.02 1.56 16 36 H 0.42 12.59 7.48 -92.71 -0.69 11.90 16 37 H 0.19 2.63 8.06 -2.91 -0.02 2.60 16 38 H 0.18 1.16 8.06 -2.91 -0.02 1.13 16 39 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 40 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.08 1.39 8.06 -2.38 -0.02 1.37 16 42 H 0.07 2.06 5.82 -2.39 -0.01 2.05 16 43 H 0.35 11.18 6.79 -89.69 -0.61 10.57 16 44 H 0.07 2.17 6.15 -2.38 -0.01 2.15 16 45 H 0.09 3.11 6.49 -2.39 -0.02 3.10 16 46 H 0.39 20.16 7.90 -92.71 -0.73 19.43 16 47 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -74.22 386.43 -0.77 -74.99 By element: Atomic # 1 Polarization: 55.56 SS G_CDS: -1.00 Total: 54.55 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: 6.66 Total: 21.80 kcal Atomic # 7 Polarization: -134.88 SS G_CDS: -8.36 Total: -143.24 kcal Atomic # 8 Polarization: -53.64 SS G_CDS: -0.10 Total: -53.74 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -74.22 -0.77 -74.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753470142.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.433 kcal (2) G-P(sol) polarization free energy of solvation -74.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds