Wall clock time and date at job start Tue Mar 31 2020 19:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46496 * 109.46967 * 174.99636 * 5 3 2 7 7 C 1.34781 * 120.00112 * 179.97438 * 6 5 3 8 8 O 1.21552 * 119.99683 * 0.02562 * 7 6 5 9 9 C 1.47850 * 120.00117 * 180.02562 * 7 6 5 10 10 C 1.39575 * 120.14195 * 359.72291 * 9 7 6 11 11 C 1.37959 * 119.85054 * 179.78897 * 10 9 7 12 12 C 1.38362 * 120.14356 * 0.49139 * 11 10 9 13 13 C 1.50699 * 119.85449 * 179.72193 * 12 11 10 14 14 N 1.46499 * 109.46812 * 270.02378 * 13 12 11 15 15 C 1.34784 * 119.99706 * 180.02562 * 14 13 12 16 16 N 1.34774 * 119.99807 * 179.97438 * 15 14 13 17 17 O 1.21582 * 119.99886 * 359.97438 * 15 14 13 18 18 C 1.38365 * 120.29376 * 359.73962 * 12 11 10 19 19 C 1.37959 * 120.14284 * 0.02562 * 18 12 11 20 20 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 21 21 C 1.36941 * 119.99583 * 85.00384 * 20 3 2 22 22 H 1.07999 * 120.00378 * 359.97438 * 21 20 3 23 23 C 1.38814 * 119.99657 * 179.97438 * 21 20 3 24 24 N 1.31616 * 120.00233 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99719 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47362 * 60.00007 * 25 23 21 27 27 H 1.48501 * 109.46916 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.46979 * 299.99800 * 25 23 21 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 1.09001 * 109.47277 * 294.99844 * 5 3 2 35 35 H 1.09008 * 109.47118 * 54.99823 * 5 3 2 36 36 H 0.97004 * 120.00126 * 0.02562 * 6 5 3 37 37 H 1.07995 * 120.07526 * 0.02562 * 10 9 7 38 38 H 1.07998 * 119.93137 * 180.23597 * 11 10 9 39 39 H 1.09001 * 109.46800 * 30.01846 * 13 12 11 40 40 H 1.08998 * 109.47479 * 150.02155 * 13 12 11 41 41 H 0.96995 * 120.00346 * 359.97438 * 14 13 12 42 42 H 0.97004 * 119.99911 * 0.02562 * 16 15 14 43 43 H 0.96998 * 119.99759 * 179.97438 * 16 15 14 44 44 H 1.07995 * 119.92899 * 179.97438 * 18 12 11 45 45 H 1.07993 * 120.07126 * 179.97438 * 19 18 12 46 46 H 0.96999 * 120.00274 * 264.99733 * 20 3 2 47 47 H 0.97001 * 119.99757 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1651 2.1464 0.2587 9 6 5.8884 4.4483 -0.0336 10 6 4.9965 5.5024 -0.2369 11 6 5.4718 6.7931 -0.3440 12 6 6.8302 7.0425 -0.2605 13 6 7.3427 8.4542 -0.3847 14 7 7.6219 8.7502 -1.7921 15 6 8.0933 9.9626 -2.1450 16 7 8.3506 10.2348 -3.4396 17 8 8.2864 10.8107 -1.2954 18 6 7.7201 6.0014 -0.0639 19 6 7.2575 4.7067 0.0497 20 7 1.6525 2.0974 -1.2519 21 6 0.4156 2.6734 -1.3689 22 1 -0.2743 2.6446 -0.5385 23 6 0.0486 3.2944 -2.5549 24 7 0.8896 3.3300 -3.5668 25 14 -1.6383 4.0807 -2.7143 26 1 -1.7865 5.1463 -1.6907 27 1 -1.7831 4.6715 -4.0691 28 1 -2.6867 3.0490 -2.5102 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.8499 1.0378 1.0961 35 1 3.9954 0.8311 -0.6659 36 1 3.4409 3.5484 -0.1309 37 1 3.9363 5.3086 -0.3063 38 1 4.7824 7.6102 -0.4975 39 1 6.5904 9.1481 -0.0098 40 1 8.2580 8.5610 0.1975 41 1 7.4682 8.0736 -2.4698 42 1 8.1962 9.5583 -4.1174 43 1 8.6895 11.1075 -3.6936 44 1 8.7792 6.2027 -0.0001 45 1 7.9532 3.8949 0.2027 46 1 2.2720 2.1231 -1.9978 47 1 0.6332 3.7642 -4.3954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753495783.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:54 Heat of formation + Delta-G solvation = -42.554119 kcal Electronic energy + Delta-G solvation = -27898.214729 eV Core-core repulsion = 23887.634372 eV Total energy + Delta-G solvation = -4010.580357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.37376 -39.85875 -38.51377 -36.72587 -35.07899 -33.93926 -33.82073 -32.46388 -31.43556 -31.09247 -29.78829 -28.12747 -26.48834 -23.92222 -22.94039 -22.79628 -21.93035 -21.38013 -20.25087 -19.85019 -18.65410 -18.03111 -17.63491 -17.11277 -16.21813 -15.56336 -15.43559 -15.34663 -15.12911 -14.84377 -14.70586 -14.59185 -14.20036 -14.04779 -13.67031 -13.42518 -13.17852 -13.05012 -12.87695 -12.78451 -12.48371 -12.13301 -11.70916 -11.48886 -11.18493 -11.01499 -10.92761 -10.79013 -10.63942 -10.49149 -10.25112 -10.09371 -10.00382 -9.73173 -9.58605 -9.32590 -9.12046 -9.07664 -9.01117 -8.65832 -7.09996 -5.87450 -3.16935 0.64974 1.24711 2.58620 2.94795 3.05601 3.35170 3.40985 3.42071 3.45925 3.84792 4.25560 4.35435 4.48736 4.62520 4.80233 4.93214 5.09568 5.22304 5.34403 5.38633 5.39655 5.49613 5.52044 5.68569 5.85848 5.87133 5.91591 5.92343 6.07367 6.11603 6.16914 6.27781 6.32997 6.37914 6.40835 6.49299 6.53068 6.56401 6.61742 6.70996 6.83241 6.97633 7.20302 7.60430 7.65444 7.84632 8.29659 8.33742 8.45976 9.41783 9.96294 10.32460 11.34088 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010581 B = 0.002712 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.527161 B =10320.748362 C =12462.798628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.162 3.838 4 H 0.054 0.946 5 C 0.114 3.886 6 N -0.704 5.704 7 C 0.551 3.449 8 O -0.551 6.551 9 C -0.117 4.117 10 C -0.081 4.081 11 C -0.105 4.105 12 C -0.094 4.094 13 C 0.179 3.821 14 N -0.741 5.741 15 C 0.706 3.294 16 N -0.868 5.868 17 O -0.597 6.597 18 C -0.111 4.111 19 C -0.065 4.065 20 N -0.721 5.721 21 C -0.239 4.239 22 H 0.073 0.927 23 C -0.010 4.010 24 N -0.929 5.929 25 Si 0.902 3.098 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.286 1.286 29 H 0.032 0.968 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.410 0.590 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.400 0.600 42 H 0.398 0.602 43 H 0.414 0.586 44 H 0.129 0.871 45 H 0.137 0.863 46 H 0.385 0.615 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.707 6.914 3.850 14.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.072 0.928 5 C -0.010 4.010 6 N -0.356 5.356 7 C 0.338 3.662 8 O -0.431 6.431 9 C -0.121 4.121 10 C -0.099 4.099 11 C -0.123 4.123 12 C -0.095 4.095 13 C 0.055 3.945 14 N -0.397 5.397 15 C 0.404 3.596 16 N -0.436 5.436 17 O -0.476 6.476 18 C -0.129 4.129 19 C -0.084 4.084 20 N -0.364 5.364 21 C -0.370 4.370 22 H 0.090 0.910 23 C -0.206 4.206 24 N -0.577 5.577 25 Si 0.733 3.267 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.213 1.213 29 H 0.051 0.949 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.248 0.752 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.234 0.766 42 H 0.226 0.774 43 H 0.246 0.754 44 H 0.147 0.853 45 H 0.155 0.845 46 H 0.219 0.781 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.157 6.945 4.844 15.646 hybrid contribution -1.215 0.365 -1.369 1.866 sum 11.942 7.310 3.474 14.426 Atomic orbital electron populations 1.21770 0.95695 0.99667 1.03248 1.22065 0.96985 0.98333 1.00066 1.20578 0.89846 0.92910 0.91463 0.92795 1.21715 0.95699 0.82350 1.01262 1.45923 1.06887 1.11039 1.71739 1.18260 0.82673 0.88199 0.77085 1.90735 1.56191 1.45795 1.50352 1.20126 0.94566 0.93383 1.03996 1.21502 1.00171 0.92138 0.96136 1.21056 0.94763 0.96989 0.99508 1.20007 0.93836 0.94651 1.00997 1.20065 1.01121 0.91915 0.81350 1.45162 1.70856 1.14111 1.09588 1.15960 0.77964 0.82568 0.83138 1.42991 1.73744 1.20008 1.06860 1.90975 1.59857 1.47105 1.49640 1.21024 0.99650 0.91905 1.00369 1.21259 0.94434 0.96974 0.95721 1.42456 1.16776 1.65887 1.11268 1.19158 0.91975 1.27831 0.98015 0.90955 1.24723 0.97995 1.01537 0.96355 1.69650 1.35202 1.48826 1.03997 0.86352 0.84309 0.79247 0.76760 1.21284 1.21788 1.21271 0.94862 0.89658 0.94114 0.93816 0.92497 0.91676 0.91643 0.75219 0.84631 0.85119 0.90408 0.90500 0.76567 0.77415 0.75375 0.85335 0.84547 0.78093 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.18 37.16 0.34 -2.19 16 2 C -0.13 -2.23 5.61 -26.73 -0.15 -2.38 16 3 C 0.16 2.88 2.59 -67.93 -0.18 2.70 16 4 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 5 C 0.11 1.87 5.23 -4.04 -0.02 1.85 16 6 N -0.70 -11.34 5.34 -61.25 -0.33 -11.67 16 7 C 0.55 9.03 7.77 -12.33 -0.10 8.94 16 8 O -0.55 -10.49 16.35 5.32 0.09 -10.40 16 9 C -0.12 -1.60 5.87 -104.97 -0.62 -2.22 16 10 C -0.08 -0.99 9.54 -39.19 -0.37 -1.36 16 11 C -0.10 -1.08 9.68 -39.64 -0.38 -1.47 16 12 C -0.09 -0.88 5.25 -104.53 -0.55 -1.43 16 13 C 0.18 1.59 5.79 -5.19 -0.03 1.56 16 14 N -0.74 -6.16 5.55 -66.41 -0.37 -6.52 16 15 C 0.71 7.15 8.84 -86.91 -0.77 6.38 16 16 N -0.87 -5.26 8.88 27.63 0.25 -5.01 16 17 O -0.60 -8.75 17.18 5.29 0.09 -8.66 16 18 C -0.11 -1.06 9.68 -39.64 -0.38 -1.44 16 19 C -0.06 -0.77 9.60 -39.18 -0.38 -1.15 16 20 N -0.72 -15.74 4.51 -53.42 -0.24 -15.98 16 21 C -0.24 -5.82 7.75 -15.06 -0.12 -5.94 16 22 H 0.07 1.73 7.32 -52.49 -0.38 1.35 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 24 N -0.93 -25.79 13.06 55.49 0.72 -25.06 16 25 Si 0.90 20.85 29.55 -169.99 -5.02 15.82 16 26 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 1.75 5.99 -51.93 -0.31 1.44 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 36 H 0.41 6.57 6.17 -40.82 -0.25 6.32 16 37 H 0.14 1.69 6.41 -52.49 -0.34 1.35 16 38 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 40 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 41 H 0.40 2.62 8.48 -40.82 -0.35 2.28 16 42 H 0.40 1.34 8.84 -40.82 -0.36 0.98 16 43 H 0.41 2.12 8.93 -40.82 -0.36 1.75 16 44 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 45 H 0.14 1.61 7.65 -52.49 -0.40 1.21 16 46 H 0.39 9.25 7.80 -40.82 -0.32 8.93 16 47 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 394.75 15.07 5.95 5.95 Total: -1.00 -32.23 394.75 -9.51 -41.75 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: -6.85 Total: 18.29 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -3.80 Total: 1.50 kcal Atomic # 7 Polarization: -64.29 SS G_CDS: 0.03 Total: -64.25 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: 0.18 Total: -19.06 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.23 -9.51 -41.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753495783.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.809 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds