Wall clock time and date at job start Tue Mar 31 2020 19:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46496 * 109.46967 * 174.99636 * 5 3 2 7 7 C 1.34781 * 120.00112 * 179.97438 * 6 5 3 8 8 O 1.21552 * 119.99683 * 0.02562 * 7 6 5 9 9 C 1.47850 * 120.00117 * 180.02562 * 7 6 5 10 10 C 1.39575 * 120.14195 * 359.72291 * 9 7 6 11 11 C 1.37959 * 119.85054 * 179.78897 * 10 9 7 12 12 C 1.38362 * 120.14356 * 0.49139 * 11 10 9 13 13 C 1.50699 * 119.85449 * 179.72193 * 12 11 10 14 14 N 1.46499 * 109.46812 * 270.02378 * 13 12 11 15 15 C 1.34784 * 119.99706 * 180.02562 * 14 13 12 16 16 N 1.34774 * 119.99807 * 179.97438 * 15 14 13 17 17 O 1.21582 * 119.99886 * 359.97438 * 15 14 13 18 18 C 1.38365 * 120.29376 * 359.73962 * 12 11 10 19 19 C 1.37959 * 120.14284 * 0.02562 * 18 12 11 20 20 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 21 21 C 1.36941 * 119.99583 * 85.00384 * 20 3 2 22 22 H 1.07999 * 120.00378 * 359.97438 * 21 20 3 23 23 C 1.38814 * 119.99657 * 179.97438 * 21 20 3 24 24 N 1.31616 * 120.00233 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99719 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47362 * 60.00007 * 25 23 21 27 27 H 1.48501 * 109.46916 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.46979 * 299.99800 * 25 23 21 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 1.09001 * 109.47277 * 294.99844 * 5 3 2 35 35 H 1.09008 * 109.47118 * 54.99823 * 5 3 2 36 36 H 0.97004 * 120.00126 * 0.02562 * 6 5 3 37 37 H 1.07995 * 120.07526 * 0.02562 * 10 9 7 38 38 H 1.07998 * 119.93137 * 180.23597 * 11 10 9 39 39 H 1.09001 * 109.46800 * 30.01846 * 13 12 11 40 40 H 1.08998 * 109.47479 * 150.02155 * 13 12 11 41 41 H 0.96995 * 120.00346 * 359.97438 * 14 13 12 42 42 H 0.97004 * 119.99911 * 0.02562 * 16 15 14 43 43 H 0.96998 * 119.99759 * 179.97438 * 16 15 14 44 44 H 1.07995 * 119.92899 * 179.97438 * 18 12 11 45 45 H 1.07993 * 120.07126 * 179.97438 * 19 18 12 46 46 H 0.96999 * 120.00274 * 264.99733 * 20 3 2 47 47 H 0.97001 * 119.99757 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1651 2.1464 0.2587 9 6 5.8884 4.4483 -0.0336 10 6 4.9965 5.5024 -0.2369 11 6 5.4718 6.7931 -0.3440 12 6 6.8302 7.0425 -0.2605 13 6 7.3427 8.4542 -0.3847 14 7 7.6219 8.7502 -1.7921 15 6 8.0933 9.9626 -2.1450 16 7 8.3506 10.2348 -3.4396 17 8 8.2864 10.8107 -1.2954 18 6 7.7201 6.0014 -0.0639 19 6 7.2575 4.7067 0.0497 20 7 1.6525 2.0974 -1.2519 21 6 0.4156 2.6734 -1.3689 22 1 -0.2743 2.6446 -0.5385 23 6 0.0486 3.2944 -2.5549 24 7 0.8896 3.3300 -3.5668 25 14 -1.6383 4.0807 -2.7143 26 1 -1.7865 5.1463 -1.6907 27 1 -1.7831 4.6715 -4.0691 28 1 -2.6867 3.0490 -2.5102 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.8499 1.0378 1.0961 35 1 3.9954 0.8311 -0.6659 36 1 3.4409 3.5484 -0.1309 37 1 3.9363 5.3086 -0.3063 38 1 4.7824 7.6102 -0.4975 39 1 6.5904 9.1481 -0.0098 40 1 8.2580 8.5610 0.1975 41 1 7.4682 8.0736 -2.4698 42 1 8.1962 9.5583 -4.1174 43 1 8.6895 11.1075 -3.6936 44 1 8.7792 6.2027 -0.0001 45 1 7.9532 3.8949 0.2027 46 1 2.2720 2.1231 -1.9978 47 1 0.6332 3.7642 -4.3954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753495783.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:53 Heat of formation + Delta-G solvation = -67.288610 kcal Electronic energy + Delta-G solvation = -27899.287297 eV Core-core repulsion = 23887.634372 eV Total energy + Delta-G solvation = -4011.652925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.35715 -40.79371 -39.57866 -38.22921 -35.92902 -35.31515 -34.61141 -34.15589 -32.34482 -31.98642 -31.46069 -29.53198 -27.45879 -25.58504 -24.30794 -23.70534 -23.01688 -22.13410 -21.62909 -21.09510 -19.44042 -19.31274 -18.76481 -18.29733 -17.33621 -16.97784 -16.46580 -16.27167 -16.17394 -15.90297 -15.79273 -15.67286 -15.64328 -15.17466 -14.90666 -14.60075 -14.54967 -14.31481 -14.09124 -13.83238 -13.66278 -13.39146 -12.96651 -12.77767 -12.73444 -12.58907 -12.37090 -12.13407 -12.05619 -11.87272 -11.62576 -11.55026 -11.32172 -11.06403 -10.84107 -10.72064 -10.18283 -10.02735 -9.96127 -9.83238 -8.96046 -7.85616 -5.12688 -0.30080 0.37488 1.52012 1.53462 1.58192 1.68140 2.14267 2.17934 2.22933 2.61192 2.87099 3.47311 3.51966 3.70653 3.77264 3.81184 3.91689 3.95681 3.99613 4.26332 4.35855 4.38554 4.48671 4.57141 4.64583 4.66935 4.73687 4.83746 4.88402 5.02953 5.10220 5.13375 5.21546 5.25426 5.34407 5.41074 5.46100 5.48772 5.57559 5.63176 5.73110 5.84021 5.88354 6.05756 6.34140 6.54884 7.06509 7.16993 7.42524 7.65149 8.13405 8.39048 9.36752 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010581 B = 0.002712 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.527161 B =10320.748362 C =12462.798628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.164 3.836 4 H 0.059 0.941 5 C 0.121 3.879 6 N -0.704 5.704 7 C 0.549 3.451 8 O -0.583 6.583 9 C -0.138 4.138 10 C -0.087 4.087 11 C -0.103 4.103 12 C -0.077 4.077 13 C 0.182 3.818 14 N -0.732 5.732 15 C 0.701 3.299 16 N -0.850 5.850 17 O -0.646 6.646 18 C -0.099 4.099 19 C -0.070 4.070 20 N -0.727 5.727 21 C -0.217 4.217 22 H 0.079 0.921 23 C -0.069 4.069 24 N -0.965 5.965 25 Si 0.956 3.044 26 H -0.278 1.278 27 H -0.304 1.304 28 H -0.285 1.285 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.410 0.590 37 H 0.128 0.872 38 H 0.145 0.855 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.411 0.589 42 H 0.413 0.587 43 H 0.420 0.580 44 H 0.156 0.844 45 H 0.134 0.866 46 H 0.372 0.628 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.091 7.426 4.713 15.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.056 3.944 4 H 0.077 0.923 5 C -0.003 4.003 6 N -0.355 5.355 7 C 0.337 3.663 8 O -0.466 6.466 9 C -0.142 4.142 10 C -0.106 4.106 11 C -0.122 4.122 12 C -0.077 4.077 13 C 0.058 3.942 14 N -0.389 5.389 15 C 0.398 3.602 16 N -0.419 5.419 17 O -0.528 6.528 18 C -0.117 4.117 19 C -0.089 4.089 20 N -0.367 5.367 21 C -0.349 4.349 22 H 0.097 0.903 23 C -0.261 4.261 24 N -0.616 5.616 25 Si 0.787 3.213 26 H -0.205 1.205 27 H -0.231 1.231 28 H -0.212 1.212 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.248 0.752 37 H 0.146 0.854 38 H 0.163 0.837 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.247 0.753 42 H 0.244 0.756 43 H 0.253 0.747 44 H 0.173 0.827 45 H 0.152 0.848 46 H 0.204 0.796 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.519 7.417 5.709 16.443 hybrid contribution -1.284 0.178 -1.582 2.045 sum 12.235 7.595 4.127 14.981 Atomic orbital electron populations 1.21699 0.95949 1.00574 1.01815 1.21989 0.96638 0.97332 1.01067 1.20716 0.90737 0.93365 0.89613 0.92260 1.21617 0.94525 0.82582 1.01600 1.45926 1.07070 1.10871 1.71641 1.18701 0.82292 0.89166 0.76101 1.90704 1.56772 1.47045 1.52040 1.20007 0.95610 0.92067 1.06481 1.21461 0.99684 0.92680 0.96764 1.21215 0.95586 0.96489 0.98867 1.20041 0.93334 0.94897 0.99462 1.20011 1.01229 0.91146 0.81784 1.45021 1.70288 1.13907 1.09657 1.16161 0.77864 0.82396 0.83740 1.42830 1.72423 1.20745 1.05867 1.90944 1.61996 1.48592 1.51263 1.21246 1.01014 0.90717 0.98773 1.21331 0.93610 0.98016 0.95944 1.42557 1.15794 1.66113 1.12270 1.19436 0.92483 1.25468 0.97507 0.90318 1.25320 1.00721 1.03432 0.96638 1.69793 1.36702 1.50852 1.04275 0.85468 0.81253 0.78523 0.76025 1.20463 1.23066 1.21171 0.92929 0.93254 0.93165 0.90677 0.93582 0.90082 0.92926 0.75191 0.85380 0.83686 0.90698 0.90088 0.75346 0.75618 0.74664 0.82686 0.84817 0.79554 0.94444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.69 9.18 71.98 0.66 -4.03 16 2 C -0.13 -4.10 5.61 30.60 0.17 -3.93 16 3 C 0.16 5.66 2.59 44.99 0.12 5.78 16 4 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 5 C 0.12 3.91 5.23 86.38 0.45 4.36 16 6 N -0.70 -22.78 5.34 -465.96 -2.49 -25.26 16 7 C 0.55 18.16 7.77 86.79 0.67 18.83 16 8 O -0.58 -22.46 16.35 -3.88 -0.06 -22.52 16 9 C -0.14 -3.75 5.87 -20.09 -0.12 -3.87 16 10 C -0.09 -2.10 9.54 22.53 0.21 -1.88 16 11 C -0.10 -1.98 9.68 22.23 0.22 -1.76 16 12 C -0.08 -1.26 5.25 -19.80 -0.10 -1.37 16 13 C 0.18 2.85 5.79 85.63 0.50 3.34 16 14 N -0.73 -10.60 5.55 -482.30 -2.68 -13.28 16 15 C 0.70 13.05 8.84 179.05 1.58 14.63 16 16 N -0.85 -8.64 8.88 -184.75 -1.64 -10.28 16 17 O -0.65 -18.35 17.18 -3.98 -0.07 -18.41 16 18 C -0.10 -1.67 9.68 22.23 0.22 -1.46 16 19 C -0.07 -1.60 9.60 22.53 0.22 -1.38 16 20 N -0.73 -31.73 4.51 -322.93 -1.46 -33.19 16 21 C -0.22 -10.53 7.75 84.03 0.65 -9.88 16 22 H 0.08 3.68 7.32 -2.91 -0.02 3.66 16 23 C -0.07 -3.59 5.50 84.86 0.47 -3.13 16 24 N -0.97 -54.66 13.06 21.65 0.28 -54.38 16 25 Si 0.96 43.11 29.55 68.60 2.03 45.14 16 26 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 27 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 28 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.98 5.99 -2.39 -0.01 1.96 16 31 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.41 13.26 6.17 -92.71 -0.57 12.69 16 37 H 0.13 3.22 6.41 -2.91 -0.02 3.21 16 38 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 39 H 0.07 1.27 8.08 -2.39 -0.02 1.25 16 40 H 0.08 1.26 8.08 -2.39 -0.02 1.24 16 41 H 0.41 4.34 8.48 -92.71 -0.79 3.55 16 42 H 0.41 1.79 8.84 -92.71 -0.82 0.97 16 43 H 0.42 3.57 8.93 -92.71 -0.83 2.74 16 44 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 45 H 0.13 3.10 7.65 -2.91 -0.02 3.08 16 46 H 0.37 18.22 7.80 -92.71 -0.72 17.50 16 47 H 0.25 13.89 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -70.09 394.75 -2.85 -72.93 By element: Atomic # 1 Polarization: 47.66 SS G_CDS: -2.68 Total: 44.98 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 5.91 Total: 14.27 kcal Atomic # 7 Polarization: -128.41 SS G_CDS: -7.98 Total: -136.39 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -0.13 Total: -40.93 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -70.09 -2.85 -72.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753495783.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.646 kcal (2) G-P(sol) polarization free energy of solvation -70.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds