Wall clock time and date at job start Tue Mar 31 2020 18:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46720 * 2 1 4 4 C 1.53001 * 109.47229 * 119.99740 * 2 1 3 5 5 H 1.08997 * 109.47192 * 181.14502 * 4 2 1 6 6 C 1.52990 * 109.47267 * 301.15402 * 4 2 1 7 7 N 1.46508 * 109.47091 * 175.00166 * 6 4 2 8 8 C 1.34780 * 119.99744 * 179.97438 * 7 6 4 9 9 O 1.21514 * 120.00244 * 359.97438 * 8 7 6 10 10 C 1.48174 * 119.99559 * 179.97438 * 8 7 6 11 11 C 1.39306 * 119.72213 * 179.97438 * 10 8 7 12 12 C 1.38588 * 119.05833 * 180.02562 * 11 10 8 13 13 C 1.38624 * 118.48895 * 0.02562 * 12 11 10 14 14 C 1.38557 * 119.35154 * 0.25225 * 13 12 11 15 15 N 1.31526 * 120.90128 * 359.49481 * 14 13 12 16 16 N 1.46903 * 109.46744 * 61.15141 * 4 2 1 17 17 C 1.46905 * 111.00201 * 86.59284 * 16 4 2 18 18 C 1.50694 * 109.47419 * 185.22417 * 17 16 4 19 19 O 1.21295 * 119.99929 * 359.97438 * 18 17 16 20 20 N 1.34772 * 120.00047 * 180.02562 * 18 17 16 21 21 C 1.37103 * 119.99992 * 179.97438 * 20 18 17 22 22 H 1.07994 * 119.99963 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99828 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00347 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99915 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.47076 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.46969 * 120.00312 * 25 23 21 28 28 H 1.48503 * 109.47318 * 240.00644 * 25 23 21 29 29 H 1.09000 * 109.47021 * 299.99761 * 1 2 3 30 30 H 1.08996 * 109.47006 * 60.00195 * 1 2 3 31 31 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47021 * 240.00239 * 2 1 3 33 33 H 1.09000 * 109.46731 * 174.45172 * 3 2 1 34 34 H 1.08993 * 109.47134 * 294.45462 * 3 2 1 35 35 H 1.09005 * 109.47179 * 54.45678 * 3 2 1 36 36 H 1.09001 * 109.47909 * 54.99986 * 6 4 2 37 37 H 1.09007 * 109.47297 * 294.99476 * 6 4 2 38 38 H 0.96994 * 119.99855 * 359.97438 * 7 6 4 39 39 H 1.08001 * 120.46880 * 359.97438 * 11 10 8 40 40 H 1.08003 * 120.75022 * 180.02562 * 12 11 10 41 41 H 1.08003 * 120.31917 * 179.97438 * 13 12 11 42 42 H 1.08000 * 119.54865 * 179.75287 * 14 13 12 43 43 H 1.00893 * 110.99867 * 210.54229 * 16 4 2 44 44 H 1.09001 * 109.46974 * 305.22342 * 17 16 4 45 45 H 1.09000 * 109.46860 * 65.21969 * 17 16 4 46 46 H 0.97002 * 120.00388 * 359.97438 * 20 18 17 47 47 H 0.96996 * 120.00420 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 3.1299 -0.7034 1.2596 6 6 1.5066 -0.0169 2.4983 7 7 1.8954 -0.7751 3.6901 8 6 1.5334 -0.3401 4.9133 9 8 0.8850 0.6812 5.0277 10 6 1.9262 -1.1073 6.1186 11 6 1.5494 -0.6522 7.3801 12 6 1.9246 -1.3802 8.4981 13 6 2.6643 -2.5382 8.3154 14 6 3.0090 -2.9285 7.0314 15 7 2.6355 -2.2212 5.9873 16 7 1.5733 -2.1140 1.2354 17 6 2.4985 -2.9720 0.4832 18 6 1.9247 -4.3617 0.3813 19 8 0.8508 -4.6129 0.8861 20 7 2.6052 -5.3256 -0.2698 21 6 2.0834 -6.5901 -0.3621 22 1 1.1268 -6.8136 0.0867 23 6 2.7848 -7.5838 -1.0339 24 7 3.9484 -7.3118 -1.5804 25 14 2.0741 -9.3068 -1.1589 26 1 0.7619 -9.3527 -0.4650 27 1 1.8904 -9.6639 -2.5886 28 1 3.0049 -10.2736 -0.5229 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1254 1.4442 0.0994 34 1 1.7600 1.9269 -0.9354 35 1 1.5978 1.9843 0.8362 36 1 0.4196 0.0438 2.4449 37 1 1.9243 0.9883 2.5550 38 1 2.4133 -1.5902 3.5988 39 1 0.9738 0.2556 7.4855 40 1 1.6470 -1.0526 9.4891 41 1 2.9728 -3.1280 9.1660 42 1 3.5887 -3.8280 6.8857 43 1 1.4410 -2.4603 2.1738 44 1 2.6408 -2.5634 -0.5173 45 1 3.4578 -3.0119 0.9991 46 1 3.4642 -5.1249 -0.6733 47 1 4.4382 -8.0056 -2.0490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753822002.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:42 Heat of formation + Delta-G solvation = -38.203417 kcal Electronic energy + Delta-G solvation = -28454.608504 eV Core-core repulsion = 24444.216807 eV Total energy + Delta-G solvation = -4010.391696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.84109 -39.45821 -38.44729 -37.54168 -34.42922 -34.04396 -33.17580 -32.80756 -31.73287 -31.18011 -28.68396 -27.09194 -26.24516 -24.86134 -23.93334 -23.66565 -23.07096 -20.93210 -19.45471 -19.16029 -18.22260 -17.84311 -17.08648 -16.60438 -16.02876 -15.94905 -15.64312 -15.37502 -15.07611 -14.79271 -14.48402 -14.38236 -13.97533 -13.82316 -13.72062 -13.65303 -13.43690 -13.22077 -12.95740 -12.37641 -12.29046 -12.10626 -11.91493 -11.77410 -11.53687 -11.44261 -11.07387 -10.91647 -10.77725 -10.49239 -10.36121 -10.33135 -10.31051 -10.20568 -9.79245 -9.55049 -9.49875 -9.14062 -8.44598 -8.04423 -7.93717 -6.40118 -3.80613 0.36124 0.89368 2.54802 2.90752 3.17224 3.27686 3.35083 3.62048 3.87268 3.93733 4.06364 4.29327 4.47759 4.50564 4.62533 4.66299 4.72755 4.89832 5.04827 5.09073 5.20762 5.26056 5.28897 5.35667 5.40122 5.53528 5.62621 5.64007 5.70546 5.75892 5.81458 5.87481 5.93790 5.99487 6.05628 6.15571 6.23813 6.29137 6.29353 6.44128 6.65407 7.17744 7.21442 7.52250 7.57087 7.60709 7.99938 8.08634 8.63672 9.20255 9.56789 10.08613 10.77795 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008723 B = 0.003108 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.188337 B = 9007.946131 C =11642.962658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.152 4.152 4 C 0.080 3.920 5 H 0.050 0.950 6 C 0.111 3.889 7 N -0.710 5.710 8 C 0.573 3.427 9 O -0.535 6.535 10 C 0.078 3.922 11 C -0.113 4.113 12 C -0.083 4.083 13 C -0.151 4.151 14 C 0.101 3.899 15 N -0.456 5.456 16 N -0.660 5.660 17 C 0.049 3.951 18 C 0.443 3.557 19 O -0.580 6.580 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.410 0.590 39 H 0.148 0.852 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.165 0.835 43 H 0.348 0.652 44 H 0.087 0.913 45 H 0.044 0.956 46 H 0.392 0.608 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.651 15.286 14.553 21.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 C -0.209 4.209 4 C -0.030 4.030 5 H 0.068 0.932 6 C -0.012 4.012 7 N -0.362 5.362 8 C 0.358 3.642 9 O -0.411 6.411 10 C -0.060 4.060 11 C -0.134 4.134 12 C -0.109 4.109 13 C -0.171 4.171 14 C -0.058 4.058 15 N -0.168 5.168 16 N -0.295 5.295 17 C -0.083 4.083 18 C 0.228 3.772 19 O -0.463 6.463 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.247 0.753 39 H 0.166 0.834 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.182 0.818 43 H 0.169 0.831 44 H 0.105 0.895 45 H 0.062 0.938 46 H 0.225 0.775 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.371 15.561 13.453 20.574 hybrid contribution 1.155 -1.108 1.032 1.904 sum 1.526 14.454 14.485 20.519 Atomic orbital electron populations 1.21808 0.94364 1.03401 1.00482 1.21033 0.97108 0.94764 0.97123 1.21936 1.00784 0.96276 1.01941 1.21829 0.97394 0.89575 0.94232 0.93186 1.21837 1.01860 0.95107 0.82374 1.45911 1.55758 1.28936 1.05580 1.17838 0.79485 0.84153 0.82739 1.90778 1.39519 1.24452 1.86399 1.21165 0.97772 0.93384 0.93687 1.22130 0.98549 1.00887 0.91826 1.21642 0.95765 0.94166 0.99331 1.22419 0.98181 0.97248 0.99227 1.22882 0.96689 0.98545 0.87710 1.67574 1.09231 1.04728 1.35272 1.60031 1.48354 0.99772 1.21308 1.21749 0.93462 0.93547 0.99565 1.19783 0.87097 0.85824 0.84486 1.90534 1.22577 1.82162 1.51058 1.41866 1.20578 1.09209 1.48574 1.19744 1.05227 0.85098 1.32584 0.87916 1.25245 0.95749 1.00239 0.96744 1.69616 1.13464 1.34784 1.36550 0.85819 0.79067 0.81634 0.77943 1.19231 1.20781 1.20800 0.93112 0.93565 0.90553 0.90592 0.92865 0.92471 0.92508 0.89597 0.90451 0.75318 0.83431 0.84038 0.84109 0.81752 0.83086 0.89482 0.93823 0.77527 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.67 37.16 0.32 -1.44 16 2 C -0.08 -0.93 2.84 -90.61 -0.26 -1.18 16 3 C -0.15 -1.42 8.71 37.16 0.32 -1.09 16 4 C 0.08 0.98 2.01 -67.71 -0.14 0.84 16 5 H 0.05 0.58 7.83 -51.93 -0.41 0.17 16 6 C 0.11 1.34 4.60 -4.04 -0.02 1.33 16 7 N -0.71 -9.03 4.97 -61.14 -0.30 -9.34 16 8 C 0.57 7.90 7.81 -12.18 -0.10 7.80 16 9 O -0.53 -8.45 16.32 5.35 0.09 -8.36 16 10 C 0.08 0.96 6.75 -83.01 -0.56 0.40 16 11 C -0.11 -1.12 9.63 -39.06 -0.38 -1.50 16 12 C -0.08 -0.61 10.17 -39.31 -0.40 -1.01 16 13 C -0.15 -1.07 10.11 -39.32 -0.40 -1.46 16 14 C 0.10 0.93 11.18 -17.56 -0.20 0.73 16 15 N -0.46 -5.47 9.54 -9.80 -0.09 -5.56 16 16 N -0.66 -10.35 5.12 -107.99 -0.55 -10.90 16 17 C 0.05 0.85 5.93 -4.98 -0.03 0.82 16 18 C 0.44 10.35 7.83 -10.99 -0.09 10.27 16 19 O -0.58 -15.71 15.89 5.54 0.09 -15.62 16 20 N -0.57 -14.23 5.29 -10.97 -0.06 -14.29 16 21 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 25 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H 0.05 0.59 6.30 -51.93 -0.33 0.26 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 1.15 7.64 -51.93 -0.40 0.75 16 32 H 0.08 0.94 7.47 -51.93 -0.39 0.55 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.51 6.88 -51.93 -0.36 0.16 16 36 H 0.09 1.14 6.14 -51.93 -0.32 0.82 16 37 H 0.08 0.87 6.86 -51.92 -0.36 0.52 16 38 H 0.41 5.19 6.73 -40.82 -0.27 4.91 16 39 H 0.15 1.36 7.64 -52.49 -0.40 0.96 16 40 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 41 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 42 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 43 H 0.35 5.77 6.61 -39.30 -0.26 5.51 16 44 H 0.09 1.39 7.43 -51.93 -0.39 1.00 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 47 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 390.12 15.07 5.88 5.88 Total: -1.00 -33.33 390.12 -8.07 -41.40 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: -6.66 Total: 17.98 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -2.15 Total: 6.56 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: -0.28 Total: -63.88 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: 0.18 Total: -23.98 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.33 -8.07 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753822002.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.194 kcal (2) G-P(sol) polarization free energy of solvation -33.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds