Wall clock time and date at job start Tue Mar 31 2020 18:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47149 * 2 1 4 4 C 1.53007 * 109.46840 * 119.99651 * 2 1 3 5 5 H 1.09000 * 109.47181 * 59.34530 * 4 2 1 6 6 C 1.53003 * 109.47175 * 299.34184 * 4 2 1 7 7 N 1.46500 * 109.46826 * 185.00156 * 6 4 2 8 8 C 1.34779 * 119.99491 * 180.02562 * 7 6 4 9 9 O 1.21513 * 120.00399 * 0.02562 * 8 7 6 10 10 C 1.48173 * 119.99383 * 179.97438 * 8 7 6 11 11 C 1.39312 * 119.71792 * 180.02562 * 10 8 7 12 12 C 1.38590 * 119.05541 * 180.02562 * 11 10 8 13 13 C 1.38623 * 118.49024 * 0.02562 * 12 11 10 14 14 C 1.38556 * 119.35179 * 0.26992 * 13 12 11 15 15 N 1.31525 * 120.90496 * 359.45352 * 14 13 12 16 16 N 1.46902 * 109.46718 * 179.34429 * 4 2 1 17 17 C 1.46897 * 110.99973 * 273.30677 * 16 4 2 18 18 C 1.50697 * 109.47097 * 174.77102 * 17 16 4 19 19 O 1.21296 * 120.00225 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00370 * 180.02562 * 18 17 16 21 21 C 1.37099 * 120.00589 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99354 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00120 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99801 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99779 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46925 * 90.00538 * 25 23 21 27 27 H 1.48506 * 109.47026 * 210.00308 * 25 23 21 28 28 H 1.48496 * 109.47402 * 330.00414 * 25 23 21 29 29 H 1.09004 * 109.47207 * 305.86712 * 1 2 3 30 30 H 1.08997 * 109.47557 * 65.86599 * 1 2 3 31 31 H 1.09004 * 109.47048 * 185.86755 * 1 2 3 32 32 H 1.08998 * 109.47247 * 239.99630 * 2 1 3 33 33 H 1.08997 * 109.47376 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46970 * 300.00109 * 3 2 1 35 35 H 1.08998 * 109.47348 * 59.99691 * 3 2 1 36 36 H 1.08996 * 109.46995 * 65.00391 * 6 4 2 37 37 H 1.09000 * 109.46930 * 305.00435 * 6 4 2 38 38 H 0.96991 * 120.00123 * 0.02562 * 7 6 4 39 39 H 1.07994 * 120.47289 * 359.97438 * 11 10 8 40 40 H 1.08007 * 120.75602 * 180.02562 * 12 11 10 41 41 H 1.08001 * 120.32313 * 180.02562 * 13 12 11 42 42 H 1.08005 * 119.54663 * 179.72834 * 14 13 12 43 43 H 1.00900 * 111.00189 * 149.35204 * 16 4 2 44 44 H 1.09000 * 109.46956 * 294.77187 * 17 16 4 45 45 H 1.09000 * 109.47173 * 54.77090 * 17 16 4 46 46 H 0.97002 * 119.99612 * 359.97438 * 20 18 17 47 47 H 0.97008 * 119.99296 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6670 -1.7454 1.2553 6 6 1.5435 0.0096 2.4985 7 7 2.1283 -0.6089 3.6909 8 6 1.8304 -0.1281 4.9142 9 8 1.0765 0.8180 5.0283 10 6 2.4215 -0.7540 6.1202 11 6 2.1092 -0.2527 7.3819 12 6 2.6702 -0.8483 8.5005 13 6 3.5247 -1.9245 8.3182 14 6 3.7956 -2.3666 7.0333 15 7 3.2453 -1.7862 5.9892 16 7 3.5089 -0.7349 1.2414 17 6 4.0205 -1.8888 0.4900 18 6 5.5218 -1.8003 0.3942 19 8 6.1080 -0.8679 0.9024 20 7 6.2133 -2.7571 -0.2561 21 6 7.5792 -2.6768 -0.3428 22 1 8.1010 -1.8466 0.1097 23 6 8.2919 -3.6636 -1.0128 24 7 7.6568 -4.6735 -1.5638 25 14 10.1529 -3.5538 -1.1315 26 1 10.7648 -4.2487 0.0295 27 1 10.6075 -4.1981 -2.3900 28 1 10.5659 -2.1274 -1.1286 29 1 -0.3634 0.6021 0.8328 30 1 -0.3634 0.4202 -0.9378 31 1 -0.3633 -1.0223 0.1051 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 0.4568 -0.0569 2.5506 37 1 1.8414 1.0570 2.4491 38 1 2.7298 -1.3643 3.5999 39 1 1.4402 0.5885 7.4869 40 1 2.4468 -0.4823 9.4918 41 1 3.9780 -2.4111 9.1692 42 1 4.4644 -3.2020 6.8874 43 1 3.8757 -0.7240 2.1813 44 1 3.7429 -2.8091 1.0039 45 1 3.5919 -1.8888 -0.5122 46 1 5.7445 -3.5030 -0.6622 47 1 8.1545 -5.3625 -2.0312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753822003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:47 Heat of formation + Delta-G solvation = -38.190244 kcal Electronic energy + Delta-G solvation = -28456.086934 eV Core-core repulsion = 24445.695809 eV Total energy + Delta-G solvation = -4010.391125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.84066 -39.45791 -38.44637 -37.54022 -34.42951 -34.04287 -33.17468 -32.80734 -31.73244 -31.17909 -28.68272 -27.09174 -26.24111 -24.86074 -23.93211 -23.66437 -23.07144 -20.93212 -19.45269 -19.15954 -18.22228 -17.84210 -17.08621 -16.60351 -16.02777 -15.94945 -15.64213 -15.37388 -15.07842 -14.78983 -14.48484 -14.38027 -13.97584 -13.82474 -13.72068 -13.65095 -13.43530 -13.22008 -12.95324 -12.37475 -12.29039 -12.10264 -11.91466 -11.77529 -11.53332 -11.44346 -11.05584 -10.91249 -10.77517 -10.49207 -10.38538 -10.35603 -10.31023 -10.19811 -9.79215 -9.55021 -9.48740 -9.14094 -8.44522 -8.04302 -7.93641 -6.39996 -3.80487 0.36116 0.89387 2.54828 2.90762 3.18741 3.27277 3.33517 3.61999 3.87346 3.93827 4.06472 4.29378 4.47766 4.50607 4.62511 4.66323 4.72760 4.89905 5.04836 5.09088 5.20798 5.26190 5.29011 5.35803 5.40176 5.53666 5.62648 5.64026 5.70601 5.75923 5.81528 5.87505 5.93979 5.99613 6.05718 6.15687 6.23849 6.29295 6.29427 6.44223 6.65964 7.17816 7.21463 7.52256 7.56942 7.60748 7.99944 8.08448 8.63820 9.20242 9.56816 10.08743 10.77844 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008724 B = 0.003109 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.886774 B = 9004.362595 C =11640.492735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.081 4.081 3 C -0.143 4.143 4 C 0.080 3.920 5 H 0.050 0.950 6 C 0.111 3.889 7 N -0.710 5.710 8 C 0.573 3.427 9 O -0.535 6.535 10 C 0.078 3.922 11 C -0.113 4.113 12 C -0.083 4.083 13 C -0.151 4.151 14 C 0.101 3.899 15 N -0.456 5.456 16 N -0.660 5.660 17 C 0.049 3.951 18 C 0.443 3.557 19 O -0.580 6.580 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.410 0.590 39 H 0.148 0.852 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.165 0.835 43 H 0.348 0.652 44 H 0.044 0.956 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.017 3.397 14.476 21.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.100 4.100 3 C -0.200 4.200 4 C -0.030 4.030 5 H 0.068 0.932 6 C -0.012 4.012 7 N -0.362 5.362 8 C 0.358 3.642 9 O -0.411 6.411 10 C -0.060 4.060 11 C -0.134 4.134 12 C -0.109 4.109 13 C -0.171 4.171 14 C -0.058 4.058 15 N -0.168 5.168 16 N -0.295 5.295 17 C -0.083 4.083 18 C 0.228 3.772 19 O -0.463 6.463 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.194 1.194 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.247 0.753 39 H 0.166 0.834 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.182 0.818 43 H 0.169 0.831 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.859 4.695 13.368 20.531 hybrid contribution 0.667 -1.454 1.052 1.914 sum -14.192 3.241 14.420 20.490 Atomic orbital electron populations 1.21937 0.95494 1.01566 1.01942 1.21032 0.94415 0.97468 0.97110 1.21803 1.03254 0.94511 1.00468 1.21834 0.88968 0.97993 0.94239 0.93183 1.21835 0.98293 0.98686 0.82364 1.45908 1.48993 1.35739 1.05543 1.17837 0.80825 0.82808 0.82744 1.90778 1.36386 1.27555 1.86427 1.21168 0.96749 0.94414 0.93682 1.22130 0.99189 1.00254 0.91819 1.21643 0.95102 0.94823 0.99334 1.22418 0.98222 0.97218 0.99221 1.22883 0.96798 0.98430 0.87710 1.67578 1.06635 1.07297 1.35293 1.60029 1.04714 1.43519 1.21201 1.21747 0.95551 0.91440 0.99577 1.19785 0.87998 0.84930 0.84498 1.90534 1.70426 1.34463 1.50926 1.41858 1.07446 1.22371 1.48517 1.19694 0.81617 1.08759 1.32651 0.87973 1.25243 1.00590 0.95405 0.96713 1.69616 1.36605 1.11758 1.36441 0.85874 0.82333 0.78643 0.77537 1.20460 1.20956 1.19417 0.92502 0.92475 0.92866 0.90605 0.90535 0.93579 0.93123 0.90447 0.89610 0.75317 0.83432 0.84038 0.84109 0.81750 0.83083 0.93828 0.89484 0.77526 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.68 37.16 0.32 -1.10 16 2 C -0.08 -0.93 2.85 -90.62 -0.26 -1.18 16 3 C -0.14 -1.76 8.68 37.16 0.32 -1.44 16 4 C 0.08 0.98 2.02 -67.71 -0.14 0.84 16 5 H 0.05 0.58 7.83 -51.93 -0.41 0.17 16 6 C 0.11 1.34 4.59 -4.04 -0.02 1.33 16 7 N -0.71 -9.04 4.96 -61.14 -0.30 -9.34 16 8 C 0.57 7.90 7.81 -12.18 -0.10 7.80 16 9 O -0.53 -8.45 16.32 5.35 0.09 -8.36 16 10 C 0.08 0.96 6.75 -83.01 -0.56 0.40 16 11 C -0.11 -1.12 9.63 -39.05 -0.38 -1.50 16 12 C -0.08 -0.61 10.17 -39.31 -0.40 -1.01 16 13 C -0.15 -1.07 10.11 -39.32 -0.40 -1.46 16 14 C 0.10 0.93 11.18 -17.57 -0.20 0.73 16 15 N -0.46 -5.47 9.54 -9.80 -0.09 -5.56 16 16 N -0.66 -10.35 5.10 -107.99 -0.55 -10.90 16 17 C 0.05 0.85 5.93 -4.98 -0.03 0.82 16 18 C 0.44 10.35 7.83 -10.99 -0.09 10.26 16 19 O -0.58 -15.71 15.89 5.54 0.09 -15.62 16 20 N -0.56 -14.23 5.29 -10.96 -0.06 -14.29 16 21 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 25 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 H 0.06 0.51 6.89 -51.93 -0.36 0.16 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.94 7.49 -51.93 -0.39 0.55 16 33 H 0.08 1.15 7.62 -51.93 -0.40 0.76 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.59 6.31 -51.93 -0.33 0.26 16 36 H 0.08 0.87 6.86 -51.93 -0.36 0.52 16 37 H 0.09 1.13 6.16 -51.93 -0.32 0.82 16 38 H 0.41 5.19 6.73 -40.82 -0.27 4.91 16 39 H 0.15 1.36 7.64 -52.49 -0.40 0.96 16 40 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 41 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.17 1.14 8.06 -52.48 -0.42 0.72 16 43 H 0.35 5.77 6.61 -39.29 -0.26 5.51 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.09 1.39 7.44 -51.93 -0.39 1.00 16 46 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 47 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 390.14 15.07 5.88 5.88 Total: -1.00 -33.31 390.14 -8.07 -41.37 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -6.67 Total: 18.02 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -2.15 Total: 6.54 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: -0.28 Total: -63.89 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: 0.18 Total: -23.98 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.31 -8.07 -41.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753822003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.181 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds