Wall clock time and date at job start Tue Mar 31 2020 18:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47149 * 2 1 4 4 C 1.53007 * 109.46840 * 119.99651 * 2 1 3 5 5 H 1.09000 * 109.47181 * 59.34530 * 4 2 1 6 6 C 1.53003 * 109.47175 * 299.34184 * 4 2 1 7 7 N 1.46500 * 109.46826 * 185.00156 * 6 4 2 8 8 C 1.34779 * 119.99491 * 180.02562 * 7 6 4 9 9 O 1.21513 * 120.00399 * 0.02562 * 8 7 6 10 10 C 1.48173 * 119.99383 * 179.97438 * 8 7 6 11 11 C 1.39312 * 119.71792 * 180.02562 * 10 8 7 12 12 C 1.38590 * 119.05541 * 180.02562 * 11 10 8 13 13 C 1.38623 * 118.49024 * 0.02562 * 12 11 10 14 14 C 1.38556 * 119.35179 * 0.26992 * 13 12 11 15 15 N 1.31525 * 120.90496 * 359.45352 * 14 13 12 16 16 N 1.46902 * 109.46718 * 179.34429 * 4 2 1 17 17 C 1.46897 * 110.99973 * 273.30677 * 16 4 2 18 18 C 1.50697 * 109.47097 * 174.77102 * 17 16 4 19 19 O 1.21296 * 120.00225 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00370 * 180.02562 * 18 17 16 21 21 C 1.37099 * 120.00589 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99354 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00120 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99801 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99779 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46925 * 90.00538 * 25 23 21 27 27 H 1.48506 * 109.47026 * 210.00308 * 25 23 21 28 28 H 1.48496 * 109.47402 * 330.00414 * 25 23 21 29 29 H 1.09004 * 109.47207 * 305.86712 * 1 2 3 30 30 H 1.08997 * 109.47557 * 65.86599 * 1 2 3 31 31 H 1.09004 * 109.47048 * 185.86755 * 1 2 3 32 32 H 1.08998 * 109.47247 * 239.99630 * 2 1 3 33 33 H 1.08997 * 109.47376 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46970 * 300.00109 * 3 2 1 35 35 H 1.08998 * 109.47348 * 59.99691 * 3 2 1 36 36 H 1.08996 * 109.46995 * 65.00391 * 6 4 2 37 37 H 1.09000 * 109.46930 * 305.00435 * 6 4 2 38 38 H 0.96991 * 120.00123 * 0.02562 * 7 6 4 39 39 H 1.07994 * 120.47289 * 359.97438 * 11 10 8 40 40 H 1.08007 * 120.75602 * 180.02562 * 12 11 10 41 41 H 1.08001 * 120.32313 * 180.02562 * 13 12 11 42 42 H 1.08005 * 119.54663 * 179.72834 * 14 13 12 43 43 H 1.00900 * 111.00189 * 149.35204 * 16 4 2 44 44 H 1.09000 * 109.46956 * 294.77187 * 17 16 4 45 45 H 1.09000 * 109.47173 * 54.77090 * 17 16 4 46 46 H 0.97002 * 119.99612 * 359.97438 * 20 18 17 47 47 H 0.97008 * 119.99296 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6670 -1.7454 1.2553 6 6 1.5435 0.0096 2.4985 7 7 2.1283 -0.6089 3.6909 8 6 1.8304 -0.1281 4.9142 9 8 1.0765 0.8180 5.0283 10 6 2.4215 -0.7540 6.1202 11 6 2.1092 -0.2527 7.3819 12 6 2.6702 -0.8483 8.5005 13 6 3.5247 -1.9245 8.3182 14 6 3.7956 -2.3666 7.0333 15 7 3.2453 -1.7862 5.9892 16 7 3.5089 -0.7349 1.2414 17 6 4.0205 -1.8888 0.4900 18 6 5.5218 -1.8003 0.3942 19 8 6.1080 -0.8679 0.9024 20 7 6.2133 -2.7571 -0.2561 21 6 7.5792 -2.6768 -0.3428 22 1 8.1010 -1.8466 0.1097 23 6 8.2919 -3.6636 -1.0128 24 7 7.6568 -4.6735 -1.5638 25 14 10.1529 -3.5538 -1.1315 26 1 10.7648 -4.2487 0.0295 27 1 10.6075 -4.1981 -2.3900 28 1 10.5659 -2.1274 -1.1286 29 1 -0.3634 0.6021 0.8328 30 1 -0.3634 0.4202 -0.9378 31 1 -0.3633 -1.0223 0.1051 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 0.4568 -0.0569 2.5506 37 1 1.8414 1.0570 2.4491 38 1 2.7298 -1.3643 3.5999 39 1 1.4402 0.5885 7.4869 40 1 2.4468 -0.4823 9.4918 41 1 3.9780 -2.4111 9.1692 42 1 4.4644 -3.2020 6.8874 43 1 3.8757 -0.7240 2.1813 44 1 3.7429 -2.8091 1.0039 45 1 3.5919 -1.8888 -0.5122 46 1 5.7445 -3.5030 -0.6622 47 1 8.1545 -5.3625 -2.0312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753822003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:46 Heat of formation + Delta-G solvation = -63.181869 kcal Electronic energy + Delta-G solvation = -28457.170652 eV Core-core repulsion = 24445.695809 eV Total energy + Delta-G solvation = -4011.474843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.68593 -40.51089 -39.95630 -38.86656 -35.99262 -35.42539 -34.48948 -33.53780 -33.21339 -32.47166 -29.83101 -28.07322 -27.69541 -26.08895 -25.21658 -24.48747 -24.01714 -21.88412 -21.11860 -20.29164 -19.88256 -19.14968 -18.02992 -17.74029 -17.16167 -16.91231 -16.75262 -16.65111 -16.39138 -16.07401 -15.94047 -15.53586 -15.27736 -15.13560 -14.77711 -14.67016 -14.50062 -14.10743 -14.02499 -13.82767 -13.55098 -13.31530 -13.07690 -12.93199 -12.89175 -12.70746 -12.61284 -12.40378 -12.12235 -11.91498 -11.75207 -11.50512 -11.47704 -11.30702 -10.97768 -10.57239 -10.37239 -10.31859 -10.08383 -9.99368 -9.33130 -8.45347 -5.93629 -0.38990 0.23847 1.38288 1.41989 1.54671 1.63339 1.96373 2.07861 2.29640 2.83253 2.86095 3.09103 3.22050 3.47336 3.60968 3.78585 3.95879 4.02305 4.04088 4.08437 4.10106 4.29716 4.37062 4.38598 4.46254 4.49573 4.57434 4.61906 4.71418 4.74751 4.87996 4.93478 5.04272 5.11516 5.13712 5.15480 5.22793 5.34023 5.42153 5.52031 5.59170 5.62037 5.88439 6.09492 6.23143 6.31954 6.62277 6.72859 7.00783 7.14709 7.58529 8.14571 8.72080 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008724 B = 0.003109 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.886774 B = 9004.362595 C =11640.492735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 C -0.139 4.139 4 C 0.087 3.913 5 H 0.067 0.933 6 C 0.117 3.883 7 N -0.707 5.707 8 C 0.568 3.432 9 O -0.565 6.565 10 C 0.046 3.954 11 C -0.120 4.120 12 C -0.078 4.078 13 C -0.134 4.134 14 C 0.084 3.916 15 N -0.484 5.484 16 N -0.673 5.673 17 C 0.065 3.935 18 C 0.440 3.560 19 O -0.622 6.622 20 N -0.573 5.573 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.275 1.275 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.410 0.590 39 H 0.148 0.852 40 H 0.178 0.822 41 H 0.179 0.821 42 H 0.183 0.817 43 H 0.341 0.659 44 H 0.069 0.931 45 H 0.106 0.894 46 H 0.396 0.604 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.600 2.257 15.624 22.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.099 4.099 3 C -0.196 4.196 4 C -0.023 4.023 5 H 0.085 0.915 6 C -0.006 4.006 7 N -0.358 5.358 8 C 0.354 3.646 9 O -0.444 6.444 10 C -0.091 4.091 11 C -0.141 4.141 12 C -0.103 4.103 13 C -0.154 4.154 14 C -0.076 4.076 15 N -0.196 5.196 16 N -0.307 5.307 17 C -0.068 4.068 18 C 0.227 3.773 19 O -0.508 6.508 20 N -0.211 5.211 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.200 1.200 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.247 0.753 39 H 0.166 0.834 40 H 0.195 0.805 41 H 0.197 0.803 42 H 0.200 0.800 43 H 0.161 0.839 44 H 0.087 0.913 45 H 0.124 0.876 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.471 3.531 14.495 21.492 hybrid contribution 0.854 -1.098 0.775 1.592 sum -14.617 2.433 15.269 21.277 Atomic orbital electron populations 1.21882 0.93358 1.02455 1.02617 1.21041 0.96104 0.96444 0.96291 1.21742 1.01048 0.95624 1.01224 1.21887 0.86664 0.99031 0.94700 0.91521 1.21796 0.98880 0.97814 0.82143 1.45919 1.48764 1.35557 1.05603 1.18209 0.80414 0.82465 0.83484 1.90739 1.37847 1.28853 1.86930 1.21045 0.98519 0.95773 0.93745 1.22295 0.99437 1.00455 0.91961 1.22081 0.94019 0.94258 0.99971 1.22840 0.96805 0.96322 0.99418 1.23372 0.96997 0.98937 0.88288 1.67491 1.07360 1.07790 1.36980 1.60016 1.06943 1.43045 1.20675 1.21597 0.90770 0.93132 1.01262 1.20850 0.90515 0.83418 0.82483 1.90503 1.72134 1.35917 1.52220 1.41911 1.06866 1.23072 1.49207 1.19638 0.83160 1.09020 1.34369 0.90519 1.25997 1.04749 0.94675 0.95739 1.69672 1.38176 1.11977 1.36285 0.84962 0.77085 0.78332 0.78170 1.19529 1.19554 1.19960 0.92190 0.91570 0.91783 0.91140 0.93785 0.92425 0.92805 0.89182 0.91050 0.75296 0.83446 0.80459 0.80326 0.80033 0.83911 0.91324 0.87629 0.76999 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.68 71.98 0.63 -1.79 16 2 C -0.08 -1.73 2.85 -10.79 -0.03 -1.76 16 3 C -0.14 -3.42 8.68 71.98 0.62 -2.79 16 4 C 0.09 2.05 2.02 44.92 0.09 2.14 16 5 H 0.07 1.40 7.83 -2.39 -0.02 1.38 16 6 C 0.12 2.81 4.59 86.38 0.40 3.20 16 7 N -0.71 -18.41 4.96 -465.65 -2.31 -20.73 16 8 C 0.57 16.22 7.81 86.88 0.68 16.90 16 9 O -0.56 -18.47 16.32 -3.76 -0.06 -18.53 16 10 C 0.05 1.15 6.75 41.91 0.28 1.44 16 11 C -0.12 -2.34 9.63 22.61 0.22 -2.12 16 12 C -0.08 -0.95 10.17 22.45 0.23 -0.72 16 13 C -0.13 -1.51 10.11 22.44 0.23 -1.29 16 14 C 0.08 1.43 11.18 84.81 0.95 2.38 16 15 N -0.48 -11.64 9.54 -184.90 -1.76 -13.41 16 16 N -0.67 -21.17 5.10 -495.57 -2.53 -23.69 16 17 C 0.06 2.19 5.93 85.56 0.51 2.69 16 18 C 0.44 20.97 7.83 87.66 0.69 21.66 16 19 O -0.62 -34.89 15.89 -3.08 -0.05 -34.94 16 20 N -0.57 -29.41 5.29 -306.98 -1.62 -31.03 16 21 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 22 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 24 N -0.92 -49.59 13.05 21.66 0.28 -49.31 16 25 Si 0.99 43.09 29.55 68.60 2.03 45.12 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 28 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 29 H 0.06 0.97 6.89 -2.38 -0.02 0.95 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 0.94 8.14 -2.38 -0.02 0.93 16 32 H 0.07 1.64 7.49 -2.39 -0.02 1.62 16 33 H 0.04 1.36 7.62 -2.39 -0.02 1.35 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.05 1.27 6.31 -2.39 -0.02 1.25 16 36 H 0.09 1.96 6.86 -2.39 -0.02 1.94 16 37 H 0.07 1.94 6.16 -2.39 -0.01 1.92 16 38 H 0.41 10.63 6.73 -92.71 -0.62 10.00 16 39 H 0.15 2.75 7.64 -2.91 -0.02 2.72 16 40 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 41 H 0.18 0.63 8.06 -2.91 -0.02 0.61 16 42 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 43 H 0.34 11.58 6.61 -89.69 -0.59 10.99 16 44 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.11 3.22 7.44 -2.39 -0.02 3.20 16 46 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 47 H 0.28 13.98 8.31 -92.70 -0.77 13.21 16 Total: -1.00 -74.65 390.14 -0.19 -74.84 By element: Atomic # 1 Polarization: 50.98 SS G_CDS: -0.92 Total: 50.06 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 6.76 Total: 21.62 kcal Atomic # 7 Polarization: -130.22 SS G_CDS: -7.94 Total: -138.16 kcal Atomic # 8 Polarization: -53.36 SS G_CDS: -0.11 Total: -53.47 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -74.65 -0.19 -74.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753822003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.656 kcal (2) G-P(sol) polarization free energy of solvation -74.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds