Wall clock time and date at job start Tue Mar 31 2020 18:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21278 * 120.00568 * 2 1 4 4 N 1.34777 * 120.00073 * 179.97438 * 2 1 3 5 5 C 1.39422 * 120.00505 * 185.08936 * 4 2 1 6 6 C 1.39015 * 119.63992 * 174.91438 * 5 4 2 7 7 C 1.39547 * 118.93821 * 179.97438 * 6 5 4 8 8 C 1.48160 * 120.88522 * 180.02562 * 7 6 5 9 9 O 1.21513 * 120.00183 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99706 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99806 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47118 * 179.97438 * 11 10 8 13 13 H 1.09007 * 109.47411 * 295.00077 * 12 11 10 14 14 N 1.46502 * 109.47025 * 54.99925 * 12 11 10 15 15 C 1.36936 * 120.00022 * 204.99700 * 14 12 11 16 16 H 1.08002 * 120.00037 * 0.02562 * 15 14 12 17 17 C 1.38809 * 120.00086 * 179.72458 * 15 14 12 18 18 N 1.31614 * 119.99918 * 0.28008 * 17 15 14 19 19 Si 1.86798 * 120.00034 * 180.27741 * 17 15 14 20 20 H 1.48503 * 109.47250 * 60.00107 * 19 17 15 21 21 H 1.48501 * 109.47118 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47320 * 299.99841 * 19 17 15 23 23 C 1.53001 * 109.47416 * 175.00053 * 12 11 10 24 24 C 1.53000 * 109.46947 * 60.00048 * 23 12 11 25 25 C 1.52994 * 109.47416 * 180.02562 * 23 12 11 26 26 C 1.39983 * 118.22824 * 0.26843 * 7 6 5 27 27 C 1.38008 * 119.15240 * 359.46341 * 26 7 6 28 28 N 1.31882 * 120.98957 * 0.55110 * 27 26 7 29 29 H 1.09000 * 109.47224 * 270.00471 * 1 2 3 30 30 H 1.09001 * 109.46986 * 30.00099 * 1 2 3 31 31 H 1.08999 * 109.47457 * 150.00299 * 1 2 3 32 32 H 0.97007 * 119.99499 * 5.09564 * 4 2 1 33 33 H 1.08003 * 120.52367 * 359.95752 * 6 5 4 34 34 H 0.96999 * 120.00246 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.46832 * 59.99573 * 11 10 8 36 36 H 1.08996 * 109.47130 * 299.99992 * 11 10 8 37 37 H 0.97000 * 120.00245 * 25.00304 * 14 12 11 38 38 H 0.97000 * 120.00063 * 180.02562 * 18 17 15 39 39 H 1.09007 * 109.46851 * 300.00368 * 23 12 11 40 40 H 1.08997 * 109.47452 * 60.00020 * 24 23 12 41 41 H 1.08997 * 109.47041 * 180.02562 * 24 23 12 42 42 H 1.09007 * 109.46944 * 299.99853 * 24 23 12 43 43 H 1.08998 * 109.47245 * 59.99946 * 25 23 12 44 44 H 1.09007 * 109.47109 * 179.97438 * 25 23 12 45 45 H 1.08998 * 109.47251 * 300.00283 * 25 23 12 46 46 H 1.07997 * 120.42206 * 179.70749 * 26 7 6 47 47 H 1.07998 * 119.50343 * 180.27051 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5709 -1.1696 0.1076 6 6 4.2501 -2.3779 0.2143 7 6 5.6415 -2.3633 0.3202 8 6 6.4088 -3.6255 0.4354 9 8 5.8267 -4.6921 0.4391 10 7 7.7522 -3.5905 0.5373 11 6 8.5109 -4.8386 0.6518 12 6 10.0041 -4.5204 0.7518 13 1 10.3411 -4.0624 -0.1782 14 7 10.2325 -3.5937 1.8633 15 6 11.3307 -2.7758 1.8581 16 1 12.0283 -2.8135 1.0344 17 6 11.5442 -1.8938 2.9084 18 7 10.6940 -1.8475 3.9120 19 14 13.0382 -0.7725 2.8975 20 1 12.9919 0.1022 1.6983 21 1 13.0365 0.0663 4.1230 22 1 14.2742 -1.5949 2.8630 23 6 10.7857 -5.8127 0.9963 24 6 10.5471 -6.7804 -0.1646 25 6 12.2788 -5.4945 1.0969 26 6 6.2926 -1.1240 0.3198 27 6 5.5432 0.0291 0.2044 28 7 4.2290 -0.0221 0.1061 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6986 -2.0056 -0.0737 33 1 3.7095 -3.3128 0.2154 34 1 8.2168 -2.7390 0.5347 35 1 8.3294 -5.4561 -0.2279 36 1 8.1930 -5.3763 1.5450 37 1 9.6059 -3.5597 2.6029 38 1 10.8429 -1.2309 4.6458 39 1 10.4487 -6.2707 1.9263 40 1 10.8840 -6.3225 -1.0945 41 1 11.1036 -7.7013 0.0098 42 1 9.4832 -7.0071 -0.2357 43 1 12.4485 -4.8052 1.9241 44 1 12.8356 -6.4152 1.2715 45 1 12.6161 -5.0362 0.1672 46 1 7.3679 -1.0712 0.4047 47 1 6.0400 0.9880 0.1990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753840061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:31 Heat of formation + Delta-G solvation = -19.260941 kcal Electronic energy + Delta-G solvation = -28440.017905 eV Core-core repulsion = 24430.447616 eV Total energy + Delta-G solvation = -4009.570289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.01628 -39.73116 -38.66837 -37.26146 -35.14263 -34.03109 -33.16720 -32.59368 -31.16006 -30.42396 -29.16641 -28.14257 -26.20093 -25.01272 -23.65218 -23.32380 -22.09881 -21.16681 -20.12211 -19.40851 -18.53216 -17.43812 -17.15377 -16.71881 -16.15161 -15.79870 -15.49253 -15.31219 -15.07005 -14.79081 -14.45668 -14.04494 -13.93743 -13.91519 -13.73148 -13.47452 -13.32024 -13.02088 -12.85501 -12.53313 -12.26594 -12.07996 -12.00706 -11.66571 -11.12415 -10.99024 -10.93962 -10.85643 -10.70669 -10.47105 -10.34189 -10.16121 -10.04820 -9.92775 -9.87743 -9.58436 -9.20800 -8.96554 -8.74502 -8.45010 -7.08608 -5.86089 -3.16054 0.75113 0.96577 2.40483 2.58552 3.07509 3.34016 3.37697 3.43068 3.44378 3.90348 4.17851 4.49886 4.60677 4.67500 4.81804 4.83476 4.97259 5.01794 5.05377 5.28416 5.32665 5.44173 5.48121 5.55157 5.58909 5.69548 5.72167 5.83820 5.94250 5.98563 6.04405 6.13720 6.19426 6.33197 6.39124 6.48384 6.54878 6.57828 6.60951 6.82102 6.92695 7.02253 7.26294 7.62155 7.75102 7.77715 8.08289 8.30611 8.35890 9.42937 9.96644 10.32606 11.35332 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012702 B = 0.002819 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.860775 B = 9930.196544 C =11766.426056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.499 3.501 3 O -0.478 6.478 4 N -0.663 5.663 5 C 0.348 3.652 6 C -0.151 4.151 7 C -0.055 4.055 8 C 0.554 3.446 9 O -0.545 6.545 10 N -0.700 5.700 11 C 0.113 3.887 12 C 0.169 3.831 13 H 0.055 0.945 14 N -0.722 5.722 15 C -0.240 4.240 16 H 0.073 0.927 17 C -0.009 4.009 18 N -0.928 5.928 19 Si 0.902 3.098 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.286 1.286 23 C -0.109 4.109 24 C -0.149 4.149 25 C -0.139 4.139 26 C -0.164 4.164 27 C 0.130 3.870 28 N -0.465 5.465 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.418 0.582 33 H 0.147 0.853 34 H 0.412 0.588 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.385 0.615 38 H 0.256 0.744 39 H 0.063 0.937 40 H 0.049 0.951 41 H 0.046 0.954 42 H 0.050 0.950 43 H 0.087 0.913 44 H 0.031 0.969 45 H 0.040 0.960 46 H 0.147 0.853 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.535 -2.509 -9.369 18.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.285 3.715 3 O -0.347 6.347 4 N -0.311 5.311 5 C 0.117 3.883 6 C -0.175 4.175 7 C -0.067 4.067 8 C 0.340 3.660 9 O -0.424 6.424 10 N -0.351 5.351 11 C -0.012 4.012 12 C 0.059 3.941 13 H 0.073 0.927 14 N -0.363 5.363 15 C -0.371 4.371 16 H 0.091 0.909 17 C -0.205 4.205 18 N -0.576 5.576 19 Si 0.733 3.267 20 H -0.212 1.212 21 H -0.218 1.218 22 H -0.213 1.213 23 C -0.131 4.131 24 C -0.207 4.207 25 C -0.197 4.197 26 C -0.185 4.185 27 C -0.028 4.028 28 N -0.180 5.180 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.100 0.900 32 H 0.255 0.745 33 H 0.165 0.835 34 H 0.250 0.750 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.219 0.781 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.105 0.895 44 H 0.050 0.950 45 H 0.060 0.940 46 H 0.165 0.835 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -15.899 -1.561 -9.439 18.556 hybrid contribution 1.196 -0.281 0.475 1.318 sum -14.703 -1.841 -8.964 17.318 Atomic orbital electron populations 1.21899 0.90771 1.05160 1.05116 1.21085 0.90658 0.83342 0.76383 1.90850 1.69980 1.30387 1.43473 1.43711 1.03897 1.10896 1.72559 1.18326 0.84784 0.89484 0.95710 1.21497 0.93904 0.97959 1.04150 1.20161 0.93502 0.93968 0.99033 1.18088 0.82575 0.88035 0.77315 1.90733 1.69830 1.30772 1.51047 1.45912 1.05677 1.11631 1.71870 1.21822 0.92419 0.85299 1.01613 1.20561 0.89747 0.90667 0.93171 0.92749 1.42465 1.28847 1.43007 1.21991 1.19134 1.00950 1.12747 1.04253 0.90944 1.24727 0.98616 1.00065 0.97119 1.69643 1.37091 1.40271 1.10561 0.86352 0.82793 0.80682 0.76834 1.21237 1.21791 1.21280 1.21728 0.97390 0.96347 0.97629 1.21946 1.00811 0.99058 0.98916 1.21817 0.94353 1.00468 1.03012 1.22433 1.02360 0.92356 1.01399 1.22669 0.87944 0.98727 0.93410 1.67503 1.09997 1.26853 1.13677 0.88504 0.88514 0.90012 0.74517 0.83537 0.75044 0.91266 0.91563 0.78088 0.93369 0.91860 0.93162 0.93531 0.93057 0.89459 0.94985 0.94045 0.83500 0.81612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.31 36.00 0.37 -0.50 16 2 C 0.50 5.22 7.90 -10.99 -0.09 5.13 16 3 O -0.48 -7.43 15.36 5.56 0.09 -7.34 16 4 N -0.66 -6.31 5.39 -11.44 -0.06 -6.37 16 5 C 0.35 4.54 7.42 -154.76 -1.15 3.39 16 6 C -0.15 -1.94 9.51 -38.81 -0.37 -2.31 16 7 C -0.06 -0.79 5.91 -104.68 -0.62 -1.41 16 8 C 0.55 8.99 7.80 -12.18 -0.10 8.90 16 9 O -0.54 -10.04 16.44 5.35 0.09 -9.95 16 10 N -0.70 -11.14 5.35 -61.15 -0.33 -11.47 16 11 C 0.11 1.81 4.73 -4.04 -0.02 1.79 16 12 C 0.17 2.95 2.18 -67.93 -0.15 2.80 16 13 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 14 N -0.72 -15.63 4.44 -53.43 -0.24 -15.87 16 15 C -0.24 -5.83 7.57 -15.06 -0.11 -5.94 16 16 H 0.07 1.73 7.40 -52.49 -0.39 1.34 16 17 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 18 N -0.93 -25.98 13.06 55.49 0.72 -25.26 16 19 Si 0.90 21.00 29.55 -169.99 -5.02 15.97 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 C -0.11 -1.78 2.69 -90.62 -0.24 -2.02 16 24 C -0.15 -2.00 8.84 37.16 0.33 -1.67 16 25 C -0.14 -2.42 8.26 37.15 0.31 -2.11 16 26 C -0.16 -2.19 9.61 -39.01 -0.37 -2.57 16 27 C 0.13 1.75 11.17 -17.61 -0.20 1.55 16 28 N -0.47 -7.02 7.86 -12.41 -0.10 -7.12 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.42 2.23 8.70 -40.82 -0.36 1.88 16 33 H 0.15 1.64 7.74 -52.48 -0.41 1.23 16 34 H 0.41 6.56 6.28 -40.82 -0.26 6.30 16 35 H 0.07 1.04 6.71 -51.93 -0.35 0.69 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.39 9.23 7.80 -40.82 -0.32 8.91 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.65 6.54 -51.92 -0.34 0.31 16 43 H 0.09 1.81 6.01 -51.93 -0.31 1.50 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.15 1.86 6.53 -52.49 -0.34 1.52 16 47 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 389.57 15.07 5.87 5.87 Total: -1.00 -33.14 389.57 -8.33 -41.47 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -6.85 Total: 15.35 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -2.50 Total: 4.71 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: 0.00 Total: -66.08 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: 0.17 Total: -17.30 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.14 -8.33 -41.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753840061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.208 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds