Wall clock time and date at job start Tue Mar 31 2020 18:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21278 * 120.00568 * 2 1 4 4 N 1.34777 * 120.00073 * 179.97438 * 2 1 3 5 5 C 1.39422 * 120.00505 * 185.08936 * 4 2 1 6 6 C 1.39015 * 119.63992 * 174.91438 * 5 4 2 7 7 C 1.39547 * 118.93821 * 179.97438 * 6 5 4 8 8 C 1.48160 * 120.88522 * 180.02562 * 7 6 5 9 9 O 1.21513 * 120.00183 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99706 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99806 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47118 * 179.97438 * 11 10 8 13 13 H 1.09007 * 109.47411 * 295.00077 * 12 11 10 14 14 N 1.46502 * 109.47025 * 54.99925 * 12 11 10 15 15 C 1.36936 * 120.00022 * 204.99700 * 14 12 11 16 16 H 1.08002 * 120.00037 * 0.02562 * 15 14 12 17 17 C 1.38809 * 120.00086 * 179.72458 * 15 14 12 18 18 N 1.31614 * 119.99918 * 0.28008 * 17 15 14 19 19 Si 1.86798 * 120.00034 * 180.27741 * 17 15 14 20 20 H 1.48503 * 109.47250 * 60.00107 * 19 17 15 21 21 H 1.48501 * 109.47118 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47320 * 299.99841 * 19 17 15 23 23 C 1.53001 * 109.47416 * 175.00053 * 12 11 10 24 24 C 1.53000 * 109.46947 * 60.00048 * 23 12 11 25 25 C 1.52994 * 109.47416 * 180.02562 * 23 12 11 26 26 C 1.39983 * 118.22824 * 0.26843 * 7 6 5 27 27 C 1.38008 * 119.15240 * 359.46341 * 26 7 6 28 28 N 1.31882 * 120.98957 * 0.55110 * 27 26 7 29 29 H 1.09000 * 109.47224 * 270.00471 * 1 2 3 30 30 H 1.09001 * 109.46986 * 30.00099 * 1 2 3 31 31 H 1.08999 * 109.47457 * 150.00299 * 1 2 3 32 32 H 0.97007 * 119.99499 * 5.09564 * 4 2 1 33 33 H 1.08003 * 120.52367 * 359.95752 * 6 5 4 34 34 H 0.96999 * 120.00246 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.46832 * 59.99573 * 11 10 8 36 36 H 1.08996 * 109.47130 * 299.99992 * 11 10 8 37 37 H 0.97000 * 120.00245 * 25.00304 * 14 12 11 38 38 H 0.97000 * 120.00063 * 180.02562 * 18 17 15 39 39 H 1.09007 * 109.46851 * 300.00368 * 23 12 11 40 40 H 1.08997 * 109.47452 * 60.00020 * 24 23 12 41 41 H 1.08997 * 109.47041 * 180.02562 * 24 23 12 42 42 H 1.09007 * 109.46944 * 299.99853 * 24 23 12 43 43 H 1.08998 * 109.47245 * 59.99946 * 25 23 12 44 44 H 1.09007 * 109.47109 * 179.97438 * 25 23 12 45 45 H 1.08998 * 109.47251 * 300.00283 * 25 23 12 46 46 H 1.07997 * 120.42206 * 179.70749 * 26 7 6 47 47 H 1.07998 * 119.50343 * 180.27051 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5709 -1.1696 0.1076 6 6 4.2501 -2.3779 0.2143 7 6 5.6415 -2.3633 0.3202 8 6 6.4088 -3.6255 0.4354 9 8 5.8267 -4.6921 0.4391 10 7 7.7522 -3.5905 0.5373 11 6 8.5109 -4.8386 0.6518 12 6 10.0041 -4.5204 0.7518 13 1 10.3411 -4.0624 -0.1782 14 7 10.2325 -3.5937 1.8633 15 6 11.3307 -2.7758 1.8581 16 1 12.0283 -2.8135 1.0344 17 6 11.5442 -1.8938 2.9084 18 7 10.6940 -1.8475 3.9120 19 14 13.0382 -0.7725 2.8975 20 1 12.9919 0.1022 1.6983 21 1 13.0365 0.0663 4.1230 22 1 14.2742 -1.5949 2.8630 23 6 10.7857 -5.8127 0.9963 24 6 10.5471 -6.7804 -0.1646 25 6 12.2788 -5.4945 1.0969 26 6 6.2926 -1.1240 0.3198 27 6 5.5432 0.0291 0.2044 28 7 4.2290 -0.0221 0.1061 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6986 -2.0056 -0.0737 33 1 3.7095 -3.3128 0.2154 34 1 8.2168 -2.7390 0.5347 35 1 8.3294 -5.4561 -0.2279 36 1 8.1930 -5.3763 1.5450 37 1 9.6059 -3.5597 2.6029 38 1 10.8429 -1.2309 4.6458 39 1 10.4487 -6.2707 1.9263 40 1 10.8840 -6.3225 -1.0945 41 1 11.1036 -7.7013 0.0098 42 1 9.4832 -7.0071 -0.2357 43 1 12.4485 -4.8052 1.9241 44 1 12.8356 -6.4152 1.2715 45 1 12.6161 -5.0362 0.1672 46 1 7.3679 -1.0712 0.4047 47 1 6.0400 0.9880 0.1990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753840061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:30 Heat of formation + Delta-G solvation = -42.288117 kcal Electronic energy + Delta-G solvation = -28441.016439 eV Core-core repulsion = 24430.447616 eV Total energy + Delta-G solvation = -4010.568822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.02876 -40.86484 -39.76231 -38.70410 -36.09874 -35.37125 -34.90578 -33.70602 -32.18161 -31.92238 -29.96264 -29.53794 -27.48186 -26.34470 -25.20139 -24.37335 -23.42641 -22.27816 -21.27586 -20.70008 -19.72244 -18.99605 -18.21648 -17.81741 -17.30044 -16.94825 -16.66036 -16.56591 -16.21114 -16.16820 -15.65522 -15.52102 -15.10963 -14.96694 -14.90517 -14.82110 -14.73850 -14.25116 -13.79771 -13.42871 -13.38260 -13.06583 -13.04597 -12.89098 -12.79610 -12.70811 -12.46793 -12.27358 -12.01835 -11.91707 -11.76992 -11.49676 -11.40920 -11.26847 -11.20387 -10.99857 -10.79725 -10.23180 -10.07171 -9.41694 -8.94211 -7.85631 -5.12565 -0.36492 -0.04572 1.52190 1.53239 1.54607 1.58283 1.76963 1.89414 2.14586 2.61328 2.83496 3.33115 3.45942 3.52019 3.78387 3.83965 3.88592 3.92364 3.96179 4.12460 4.30839 4.33446 4.47200 4.52245 4.56942 4.61694 4.67485 4.69167 4.79153 4.94373 4.96051 4.99705 5.03677 5.08087 5.15571 5.17797 5.27843 5.32207 5.48654 5.60391 5.62654 5.67530 5.79272 6.18444 6.34096 6.45614 6.85107 7.05756 7.26157 7.42724 8.13759 8.38671 9.36714 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012702 B = 0.002819 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.860775 B = 9930.196544 C =11766.426056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.493 3.507 3 O -0.536 6.536 4 N -0.649 5.649 5 C 0.342 3.658 6 C -0.144 4.144 7 C -0.070 4.070 8 C 0.557 3.443 9 O -0.568 6.568 10 N -0.699 5.699 11 C 0.121 3.879 12 C 0.171 3.829 13 H 0.059 0.941 14 N -0.727 5.727 15 C -0.214 4.214 16 H 0.079 0.921 17 C -0.069 4.069 18 N -0.966 5.966 19 Si 0.955 3.045 20 H -0.278 1.278 21 H -0.306 1.306 22 H -0.284 1.284 23 C -0.106 4.106 24 C -0.141 4.141 25 C -0.135 4.135 26 C -0.163 4.163 27 C 0.124 3.876 28 N -0.493 5.493 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.438 0.562 33 H 0.164 0.836 34 H 0.412 0.588 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.372 0.628 38 H 0.246 0.754 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.048 0.952 44 H 0.049 0.951 45 H 0.047 0.953 46 H 0.151 0.849 47 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.522 -3.758 -11.065 20.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.283 3.717 3 O -0.409 6.409 4 N -0.299 5.299 5 C 0.110 3.890 6 C -0.168 4.168 7 C -0.081 4.081 8 C 0.343 3.657 9 O -0.449 6.449 10 N -0.350 5.350 11 C -0.003 4.003 12 C 0.062 3.938 13 H 0.077 0.923 14 N -0.367 5.367 15 C -0.346 4.346 16 H 0.097 0.903 17 C -0.261 4.261 18 N -0.617 5.617 19 Si 0.786 3.214 20 H -0.204 1.204 21 H -0.233 1.233 22 H -0.211 1.211 23 C -0.128 4.128 24 C -0.199 4.199 25 C -0.192 4.192 26 C -0.185 4.185 27 C -0.033 4.033 28 N -0.209 5.209 29 H 0.131 0.869 30 H 0.116 0.884 31 H 0.134 0.866 32 H 0.279 0.721 33 H 0.182 0.818 34 H 0.249 0.751 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.204 0.796 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.168 0.832 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -16.896 -2.873 -11.193 20.469 hybrid contribution 1.465 0.014 0.934 1.738 sum -15.430 -2.859 -10.258 18.748 Atomic orbital electron populations 1.21931 0.86206 1.06933 1.06634 1.22139 0.92686 0.82441 0.74482 1.90826 1.71524 1.32376 1.46214 1.43781 1.02584 1.12064 1.71507 1.18596 0.86298 0.88997 0.95099 1.21633 0.93397 0.98593 1.03148 1.20118 0.94173 0.93349 1.00447 1.18297 0.82481 0.88340 0.76552 1.90712 1.70172 1.31713 1.52307 1.45906 1.05802 1.11559 1.71692 1.21735 0.91226 0.85503 1.01884 1.20711 0.90978 0.90462 0.91645 0.92295 1.42572 1.27852 1.43593 1.22681 1.19407 1.00718 1.11179 1.03256 0.90272 1.25309 1.00967 1.02278 0.97588 1.69786 1.38983 1.41569 1.11376 0.85484 0.80487 0.79171 0.76239 1.20410 1.23304 1.21077 1.21623 0.96343 0.96174 0.98614 1.21858 1.01752 0.98670 0.97616 1.21733 0.95371 1.00485 1.01651 1.22448 1.02514 0.92164 1.01374 1.22959 0.87777 0.99469 0.93094 1.67557 1.10713 1.28096 1.14537 0.86879 0.88411 0.86568 0.72120 0.81842 0.75058 0.89409 0.92734 0.79565 0.94502 0.93080 0.92198 0.92186 0.92141 0.93247 0.93171 0.93415 0.83154 0.80017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 10.31 71.23 0.73 -0.45 16 2 C 0.49 9.72 7.90 87.65 0.69 10.42 16 3 O -0.54 -16.77 15.36 -3.02 -0.05 -16.82 16 4 N -0.65 -11.36 5.39 -308.51 -1.66 -13.02 16 5 C 0.34 8.67 7.42 132.93 0.99 9.66 16 6 C -0.14 -3.55 9.51 22.77 0.22 -3.33 16 7 C -0.07 -1.97 5.91 -19.90 -0.12 -2.09 16 8 C 0.56 17.73 7.80 86.88 0.68 18.41 16 9 O -0.57 -20.43 16.44 -3.76 -0.06 -20.49 16 10 N -0.70 -21.86 5.35 -465.66 -2.49 -24.35 16 11 C 0.12 3.74 4.73 86.38 0.41 4.15 16 12 C 0.17 5.76 2.18 44.99 0.10 5.86 16 13 H 0.06 1.97 8.08 -2.38 -0.02 1.95 16 14 N -0.73 -31.50 4.44 -322.94 -1.43 -32.93 16 15 C -0.21 -10.35 7.57 84.03 0.64 -9.71 16 16 H 0.08 3.69 7.40 -2.91 -0.02 3.67 16 17 C -0.07 -3.64 5.50 84.86 0.47 -3.17 16 18 N -0.97 -55.46 13.06 21.65 0.28 -55.18 16 19 Si 0.96 43.66 29.55 68.60 2.03 45.69 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 21 H -0.31 -14.60 7.11 99.48 0.71 -13.90 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 23 C -0.11 -3.28 2.69 -10.80 -0.03 -3.31 16 24 C -0.14 -3.34 8.84 71.98 0.64 -2.71 16 25 C -0.14 -4.47 8.26 71.98 0.59 -3.88 16 26 C -0.16 -4.38 9.61 22.64 0.22 -4.16 16 27 C 0.12 3.35 11.17 84.63 0.94 4.29 16 28 N -0.49 -14.92 7.86 -193.18 -1.52 -16.44 16 29 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.44 3.58 8.70 -92.70 -0.81 2.77 16 33 H 0.16 3.38 7.74 -2.91 -0.02 3.36 16 34 H 0.41 13.01 6.28 -92.71 -0.58 12.43 16 35 H 0.09 2.43 6.71 -2.39 -0.02 2.41 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.37 18.14 7.80 -92.71 -0.72 17.42 16 38 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 39 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.06 1.33 6.54 -2.38 -0.02 1.32 16 43 H 0.05 2.01 6.01 -2.39 -0.01 2.00 16 44 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 45 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.15 3.84 6.53 -2.91 -0.02 3.82 16 47 H 0.18 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -73.21 389.57 1.17 -72.03 By element: Atomic # 1 Polarization: 42.62 SS G_CDS: -1.09 Total: 41.54 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 7.16 Total: 19.97 kcal Atomic # 7 Polarization: -135.10 SS G_CDS: -6.82 Total: -141.92 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.11 Total: -37.31 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -73.21 1.17 -72.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753840061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.743 kcal (2) G-P(sol) polarization free energy of solvation -73.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds