Wall clock time and date at job start Tue Mar 31 2020 18:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3 5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1 6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1 7 7 C 1.52998 * 109.47384 * 185.00170 * 6 4 2 8 8 N 1.46493 * 109.47105 * 180.02562 * 7 6 4 9 9 C 1.34781 * 119.99920 * 179.97438 * 8 7 6 10 10 O 1.21507 * 119.99810 * 359.97438 * 9 8 7 11 11 C 1.48227 * 119.99827 * 180.02562 * 9 8 7 12 12 C 1.39632 * 119.65090 * 179.73245 * 11 9 8 13 13 C 1.38548 * 119.24320 * 179.72785 * 12 11 9 14 14 C 1.38583 * 118.55155 * 0.52660 * 13 12 11 15 15 C 1.39588 * 119.25082 * 359.73297 * 14 13 12 16 16 C 1.48222 * 119.65329 * 179.97438 * 15 14 13 17 17 N 1.34777 * 119.99790 * 180.02562 * 16 15 14 18 18 O 1.21509 * 120.00239 * 0.02562 * 16 15 14 19 19 N 1.32339 * 119.65394 * 359.97438 * 11 9 8 20 20 N 1.46498 * 109.47120 * 180.02562 * 4 2 1 21 21 C 1.36935 * 120.00239 * 84.99640 * 20 4 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 4 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 4 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09003 * 109.47348 * 299.99929 * 1 2 3 30 30 H 1.09004 * 109.47447 * 60.00101 * 1 2 3 31 31 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46986 * 240.00225 * 2 1 3 33 33 H 1.08994 * 109.47070 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47532 * 300.00174 * 3 2 1 35 35 H 1.09003 * 109.47082 * 59.99909 * 3 2 1 36 36 H 1.08997 * 109.46795 * 304.99831 * 6 4 2 37 37 H 1.08999 * 109.47341 * 64.99651 * 6 4 2 38 38 H 1.09011 * 109.46808 * 299.99793 * 7 6 4 39 39 H 1.08999 * 109.47306 * 59.99458 * 7 6 4 40 40 H 0.97002 * 120.00686 * 359.97438 * 8 7 6 41 41 H 1.07999 * 120.37537 * 359.97438 * 12 11 9 42 42 H 1.08001 * 120.72091 * 180.23237 * 13 12 11 43 43 H 1.08002 * 120.37550 * 179.75016 * 14 13 12 44 44 H 0.97003 * 120.00364 * 359.97438 * 17 16 15 45 45 H 0.96999 * 120.00182 * 180.02562 * 17 16 15 46 46 H 0.97004 * 119.99747 * 265.00379 * 20 4 2 47 47 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 6 1.9347 -2.8478 2.5565 8 7 1.4470 -4.2292 2.5562 9 6 1.6879 -5.0292 3.6138 10 8 2.3101 -4.6047 4.5673 11 6 1.1949 -6.4270 3.6132 12 6 1.4535 -7.2512 4.7103 13 6 0.9838 -8.5546 4.7033 14 6 0.2794 -8.9989 3.5956 15 6 0.0611 -8.1239 2.5302 16 6 -0.6907 -8.5898 1.3408 17 7 -0.9051 -7.7510 0.3079 18 8 -1.1138 -9.7281 1.2969 19 7 0.5184 -6.8823 2.5709 20 7 3.5050 -0.7207 1.2495 21 6 4.1892 0.3542 1.7510 22 1 3.6488 1.2015 2.1466 23 6 5.5773 0.3549 1.7508 24 7 6.2358 -0.6800 1.2736 25 14 6.5107 1.8210 2.4355 26 1 7.9708 1.5730 2.3266 27 1 6.1563 3.0384 1.6624 28 1 6.1470 2.0171 3.8618 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 0.4438 -2.1651 1.1596 37 1 1.9646 -2.7028 0.4074 38 1 3.0212 -2.8465 2.6461 39 1 1.5001 -2.3088 3.3984 40 1 0.9506 -4.5682 1.7949 41 1 2.0098 -6.8756 5.5564 42 1 1.1668 -9.2115 5.5408 43 1 -0.0966 -10.0106 3.5573 44 1 -0.5677 -6.8422 0.3430 45 1 -1.3974 -8.0557 -0.4703 46 1 3.9903 -1.4819 0.8944 47 1 5.7512 -1.4415 0.9184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755552984.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:49 Heat of formation + Delta-G solvation = -66.579544 kcal Electronic energy + Delta-G solvation = -28284.478723 eV Core-core repulsion = 24272.856545 eV Total energy + Delta-G solvation = -4011.622178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.02169 -40.71483 -39.63736 -39.01678 -36.22560 -35.21753 -34.98273 -33.75576 -32.87398 -32.38987 -30.93137 -27.85850 -26.96913 -26.06363 -25.57118 -24.63736 -22.73464 -22.34591 -21.67432 -20.71238 -19.59833 -19.37110 -18.73073 -18.01365 -17.14509 -17.11555 -16.90293 -16.57837 -16.36274 -16.21737 -15.97157 -15.71194 -15.48357 -15.23567 -15.19729 -14.69256 -14.57310 -14.28299 -14.16138 -13.63570 -13.23553 -13.11294 -12.89015 -12.79695 -12.63317 -12.52546 -12.10598 -11.99373 -11.94835 -11.79972 -11.49701 -11.43219 -11.31347 -11.16768 -11.10382 -10.86464 -10.79760 -10.73816 -10.49695 -10.15628 -8.98514 -8.26389 -5.18712 -0.69125 -0.27565 1.31694 1.58225 1.67479 1.82654 1.83500 1.89513 2.23392 2.72823 2.75452 2.82065 3.48825 3.57796 3.73228 3.77631 3.82637 3.86136 3.86795 4.08973 4.19237 4.27278 4.35120 4.36629 4.44378 4.61915 4.73409 4.73943 4.85814 4.91304 4.93348 4.98369 5.07850 5.16851 5.19967 5.28909 5.30707 5.34900 5.40135 5.64481 5.70641 5.73188 5.77564 6.07028 6.30788 6.53436 6.60535 7.03670 7.15335 7.20530 8.11323 8.22094 9.25323 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013457 B = 0.002597 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.271824 B =10779.828605 C =12144.749577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C -0.137 4.137 4 C 0.185 3.815 5 H 0.038 0.962 6 C -0.121 4.121 7 C 0.133 3.867 8 N -0.692 5.692 9 C 0.562 3.438 10 O -0.570 6.570 11 C 0.066 3.934 12 C -0.092 4.092 13 C -0.067 4.067 14 C -0.086 4.086 15 C 0.058 3.942 16 C 0.580 3.420 17 N -0.816 5.816 18 O -0.568 6.568 19 N -0.431 5.431 20 N -0.742 5.742 21 C -0.299 4.299 22 H 0.066 0.934 23 C -0.110 4.110 24 N -0.983 5.983 25 Si 1.115 2.885 26 H -0.299 1.299 27 H -0.278 1.278 28 H -0.284 1.284 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.039 0.961 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.039 0.961 39 H 0.056 0.944 40 H 0.420 0.580 41 H 0.157 0.843 42 H 0.191 0.809 43 H 0.170 0.830 44 H 0.420 0.580 45 H 0.416 0.584 46 H 0.357 0.643 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.858 -14.836 0.709 24.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 C -0.195 4.195 4 C 0.076 3.924 5 H 0.056 0.944 6 C -0.160 4.160 7 C 0.009 3.991 8 N -0.343 5.343 9 C 0.347 3.653 10 O -0.449 6.449 11 C -0.075 4.075 12 C -0.113 4.113 13 C -0.092 4.092 14 C -0.107 4.107 15 C -0.083 4.083 16 C 0.363 3.637 17 N -0.380 5.380 18 O -0.447 6.447 19 N -0.146 5.146 20 N -0.384 5.384 21 C -0.431 4.431 22 H 0.084 0.916 23 C -0.301 4.301 24 N -0.633 5.633 25 Si 0.942 3.058 26 H -0.225 1.225 27 H -0.204 1.204 28 H -0.210 1.210 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.126 0.874 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.258 0.742 41 H 0.175 0.825 42 H 0.209 0.791 43 H 0.187 0.813 44 H 0.251 0.749 45 H 0.250 0.750 46 H 0.189 0.811 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -17.398 -13.826 1.162 22.253 hybrid contribution -0.867 -0.914 -0.372 1.314 sum -18.265 -14.740 0.790 23.484 Atomic orbital electron populations 1.21856 0.93500 1.02526 1.01741 1.21627 0.96203 0.96152 0.98632 1.21755 1.01463 0.96399 0.99863 1.20368 0.82658 0.93591 0.95761 0.94411 1.22025 1.02927 0.95427 0.95578 1.21190 0.98362 0.80504 0.99064 1.45738 1.56016 1.12372 1.20220 1.18249 0.79297 0.84955 0.82763 1.90816 1.42164 1.75632 1.36238 1.20895 0.99575 0.94308 0.92704 1.22575 0.96205 0.94285 0.98193 1.22080 0.93495 0.94664 0.98973 1.22625 0.94480 1.01796 0.91802 1.21197 1.00291 0.90365 0.96473 1.17839 0.78500 0.84573 0.82775 1.43551 1.57815 1.16978 1.19609 1.90829 1.52786 1.19845 1.81244 1.67199 1.07050 1.14958 1.25348 1.42634 1.01784 1.19573 1.74363 1.20209 0.91627 0.97388 1.33850 0.91638 1.26826 0.95138 1.05400 1.02754 1.70983 1.37525 1.07922 1.46842 0.82763 0.74616 0.72538 0.75867 1.22499 1.20450 1.21014 0.92929 0.92324 0.90845 0.92882 0.93727 0.93093 0.94160 0.87368 0.90927 0.94283 0.92533 0.74203 0.82528 0.79140 0.81274 0.74869 0.75050 0.81085 0.94658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.85 71.98 0.64 -2.47 16 2 C -0.11 -3.28 2.69 -10.79 -0.03 -3.31 16 3 C -0.14 -4.87 8.26 71.98 0.59 -4.28 16 4 C 0.18 6.56 2.02 44.99 0.09 6.65 16 5 H 0.04 1.45 8.08 -2.39 -0.02 1.43 16 6 C -0.12 -3.27 4.65 30.59 0.14 -3.13 16 7 C 0.13 4.20 5.56 86.38 0.48 4.68 16 8 N -0.69 -17.79 5.54 -465.60 -2.58 -20.37 16 9 C 0.56 16.36 7.81 86.90 0.68 17.04 16 10 O -0.57 -21.39 16.32 -3.74 -0.06 -21.46 16 11 C 0.07 1.46 6.75 42.06 0.28 1.75 16 12 C -0.09 -1.63 9.63 22.68 0.22 -1.41 16 13 C -0.07 -0.76 10.16 22.43 0.23 -0.53 16 14 C -0.09 -1.18 9.63 22.68 0.22 -0.96 16 15 C 0.06 1.01 6.75 42.04 0.28 1.29 16 16 C 0.58 10.29 8.09 86.90 0.70 10.99 16 17 N -0.82 -9.07 8.86 -175.34 -1.55 -10.63 16 18 O -0.57 -13.38 17.16 -3.74 -0.06 -13.44 16 19 N -0.43 -8.07 8.71 -174.08 -1.52 -9.59 16 20 N -0.74 -34.87 4.45 -322.95 -1.44 -36.31 16 21 C -0.30 -16.07 7.57 84.03 0.64 -15.44 16 22 H 0.07 3.47 7.40 -2.91 -0.02 3.45 16 23 C -0.11 -6.37 5.50 84.86 0.47 -5.90 16 24 N -0.98 -61.74 13.70 21.65 0.30 -61.45 16 25 Si 1.12 52.90 29.92 68.60 2.05 54.95 16 26 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 27 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 28 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.07 1.31 6.32 -2.39 -0.02 1.30 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.04 1.95 6.01 -2.39 -0.01 1.94 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.11 2.13 6.17 -2.39 -0.01 2.12 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.04 1.60 7.75 -2.38 -0.02 1.58 16 39 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.42 8.04 7.80 -92.71 -0.72 7.32 16 41 H 0.16 2.76 7.64 -2.91 -0.02 2.73 16 42 H 0.19 0.66 8.06 -2.91 -0.02 0.64 16 43 H 0.17 1.83 7.64 -2.91 -0.02 1.81 16 44 H 0.42 3.59 8.16 -92.71 -0.76 2.83 16 45 H 0.42 3.19 8.93 -92.71 -0.83 2.36 16 46 H 0.36 17.96 6.63 -92.71 -0.61 17.34 16 47 H 0.24 15.15 6.77 -92.71 -0.63 14.52 16 Total: -1.00 -77.76 390.26 -0.97 -78.73 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: -1.74 Total: 34.59 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 5.63 Total: 4.96 kcal Atomic # 7 Polarization: -131.54 SS G_CDS: -6.79 Total: -138.34 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -0.13 Total: -34.90 kcal Atomic # 14 Polarization: 52.90 SS G_CDS: 2.05 Total: 54.95 kcal Total: -77.76 -0.97 -78.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755552984.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.151 kcal (2) G-P(sol) polarization free energy of solvation -77.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds