Wall clock time and date at job start Tue Mar 31 2020 19:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46939 * 2 1 4 4 C 1.52999 * 109.47070 * 119.99466 * 2 1 3 5 5 C 1.53003 * 109.47001 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.46790 * 299.99737 * 5 4 2 7 7 C 1.53001 * 109.46800 * 60.00500 * 6 5 4 8 8 H 1.09009 * 109.47054 * 179.97438 * 7 6 5 9 9 N 1.46499 * 109.47410 * 59.99765 * 7 6 5 10 10 C 1.34774 * 119.99845 * 85.00236 * 9 7 6 11 11 O 1.21356 * 120.00145 * 359.97438 * 10 9 7 12 12 C 1.49346 * 119.99606 * 180.02562 * 10 9 7 13 13 O 1.21378 * 120.00278 * 359.97438 * 12 10 9 14 14 N 1.34783 * 119.99620 * 179.97438 * 12 10 9 15 15 C 1.39931 * 119.99530 * 179.97438 * 14 12 10 16 16 C 1.40457 * 125.98593 * 0.02562 * 15 14 12 17 17 C 1.35212 * 107.87275 * 179.78843 * 16 15 14 18 18 N 1.34996 * 107.87169 * 0.36629 * 17 16 15 19 19 C 1.46499 * 125.96836 * 179.89597 * 18 17 16 20 20 C 1.50701 * 109.46992 * 124.71253 * 19 18 17 21 21 H 1.07998 * 120.00129 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99861 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99913 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99734 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47094 * 90.00289 * 24 22 20 26 26 H 1.48505 * 109.47195 * 210.00171 * 24 22 20 27 27 H 1.48493 * 109.47449 * 330.00136 * 24 22 20 28 28 N 1.31279 * 125.97764 * 180.02562 * 15 14 12 29 29 C 1.52996 * 109.47100 * 239.99671 * 2 1 3 30 30 H 1.08995 * 109.47278 * 300.00292 * 1 2 3 31 31 H 1.09001 * 109.46960 * 60.00586 * 1 2 3 32 32 H 1.09004 * 109.46939 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46826 * 60.00130 * 4 2 1 34 34 H 1.08995 * 109.47268 * 300.00248 * 4 2 1 35 35 H 1.09004 * 109.46947 * 180.02562 * 5 4 2 36 36 H 1.08994 * 109.47042 * 59.99600 * 5 4 2 37 37 H 1.08996 * 109.47444 * 300.00503 * 6 5 4 38 38 H 1.08999 * 109.46836 * 180.02562 * 6 5 4 39 39 H 0.97002 * 120.00059 * 264.99621 * 9 7 6 40 40 H 0.96993 * 120.00331 * 359.97438 * 14 12 10 41 41 H 1.08000 * 126.06149 * 0.02562 * 16 15 14 42 42 H 1.07993 * 126.06591 * 180.25640 * 17 16 15 43 43 H 1.09002 * 109.47391 * 4.71243 * 19 18 17 44 44 H 1.09001 * 109.46813 * 244.71299 * 19 18 17 45 45 H 0.97002 * 119.99768 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.47424 * 60.00027 * 29 2 1 47 47 H 1.08996 * 109.47221 * 300.00129 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5701 -0.7206 1.2496 6 6 4.0805 -1.4416 0.0004 7 6 3.5705 -0.7204 -1.2489 8 1 3.9345 -1.2339 -2.1389 9 7 4.0584 0.6609 -1.2487 10 6 5.2803 0.9441 -1.7418 11 8 5.9766 0.0547 -2.1855 12 6 5.7778 2.3522 -1.7411 13 8 5.0816 3.2417 -1.2969 14 7 7.0000 2.6353 -2.2338 15 6 7.4660 3.9548 -2.2336 16 6 6.7695 5.0759 -1.7532 17 6 7.5585 6.1602 -1.9264 18 7 8.7082 5.7482 -2.5016 19 6 9.8416 6.6017 -2.8668 20 6 11.0953 6.0779 -2.2150 21 1 11.0523 5.1971 -1.5914 22 6 12.2975 6.7225 -2.4155 23 7 12.3500 7.7947 -3.1752 24 14 13.8517 6.0728 -1.6081 25 1 14.5084 5.0958 -2.5133 26 1 14.7795 7.2011 -1.3408 27 1 13.5028 5.4051 -0.3285 28 7 8.6307 4.3614 -2.6824 29 6 2.0400 -0.7213 -1.2492 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6767 -1.7487 1.2493 34 1 1.6767 -0.2073 2.1392 35 1 3.9334 -1.2347 2.1394 36 1 3.9330 0.3072 1.2497 37 1 3.7175 -2.4694 0.0002 38 1 5.1705 -1.4416 0.0008 39 1 3.5019 1.3718 -0.8938 40 1 7.5566 1.9245 -2.5884 41 1 5.7807 5.0720 -1.3188 42 1 7.3120 7.1758 -1.6545 43 1 9.6538 7.6202 -2.5271 44 1 9.9658 6.5969 -3.9497 45 1 13.1958 8.2484 -3.3160 46 1 1.6767 -0.2076 -2.1392 47 1 1.6767 -1.7489 -1.2491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086447757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:00 Heat of formation + Delta-G solvation = -6.302148 kcal Electronic energy + Delta-G solvation = -28219.671014 eV Core-core repulsion = 24210.662660 eV Total energy + Delta-G solvation = -4009.008354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.21012 -40.46996 -39.32924 -38.11987 -35.25191 -34.29018 -33.35804 -32.55334 -31.04947 -30.39702 -29.41978 -27.03590 -26.84271 -25.34689 -23.11594 -22.75599 -21.81954 -21.47694 -20.51395 -19.73171 -19.42679 -18.38311 -16.87028 -16.61648 -16.47760 -16.17854 -15.78940 -15.70544 -15.24353 -14.89237 -14.63935 -14.35826 -14.29417 -13.99443 -13.80130 -13.52973 -12.96896 -12.90281 -12.67431 -12.59042 -12.41754 -12.30036 -12.24170 -11.95933 -11.89156 -11.53563 -11.38849 -11.06064 -10.95321 -10.88437 -10.63373 -10.54073 -10.47787 -10.27848 -10.03783 -9.57592 -9.54231 -9.46163 -8.65209 -8.23460 -7.58599 -6.26311 -4.31455 1.20848 2.06823 2.66065 3.03381 3.19979 3.23734 3.29545 3.35169 3.66212 3.85624 4.21399 4.24551 4.28468 4.30331 4.40208 4.65408 4.73369 4.95557 4.99996 5.02524 5.09058 5.17938 5.23748 5.27474 5.40779 5.42324 5.47844 5.56350 5.65608 5.70980 5.76679 5.81409 5.85230 5.88246 6.01135 6.08167 6.10399 6.32029 6.40903 6.78803 6.91901 7.01789 7.24137 7.36864 7.63375 7.69083 7.84577 7.95483 7.97226 8.53662 8.77159 9.34420 10.82475 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023614 B = 0.002056 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.449068 B =13616.314485 C =14087.331793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.071 0.929 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.132 4.132 7 C 0.144 3.856 8 H 0.094 0.906 9 N -0.693 5.693 10 C 0.516 3.484 11 O -0.516 6.516 12 C 0.511 3.489 13 O -0.501 6.501 14 N -0.598 5.598 15 C 0.250 3.750 16 C -0.286 4.286 17 C 0.053 3.947 18 N -0.314 5.314 19 C 0.257 3.743 20 C -0.530 4.530 21 H 0.069 0.931 22 C 0.062 3.938 23 N -0.895 5.895 24 Si 0.909 3.091 25 H -0.277 1.277 26 H -0.284 1.284 27 H -0.272 1.272 28 N -0.294 5.294 29 C -0.122 4.122 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.412 0.588 40 H 0.423 0.577 41 H 0.161 0.839 42 H 0.170 0.830 43 H 0.059 0.941 44 H 0.047 0.953 45 H 0.267 0.733 46 H 0.072 0.928 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.676 -16.206 6.401 29.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 H 0.089 0.911 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.170 4.170 7 C 0.040 3.960 8 H 0.112 0.888 9 N -0.348 5.348 10 C 0.296 3.704 11 O -0.391 6.391 12 C 0.291 3.709 13 O -0.374 6.374 14 N -0.247 5.247 15 C -0.002 4.002 16 C -0.317 4.317 17 C -0.097 4.097 18 N -0.096 5.096 19 C 0.140 3.860 20 C -0.568 4.568 21 H 0.087 0.913 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.736 3.264 25 H -0.203 1.203 26 H -0.210 1.210 27 H -0.197 1.197 28 N -0.126 5.126 29 C -0.160 4.160 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.250 0.750 40 H 0.260 0.740 41 H 0.178 0.822 42 H 0.188 0.812 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.091 0.909 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.357 -16.354 5.746 28.290 hybrid contribution 0.289 0.054 0.724 0.782 sum -22.068 -16.300 6.470 28.188 Atomic orbital electron populations 1.21819 0.94797 1.01868 1.01954 1.21175 0.95889 0.99700 0.94793 0.91083 1.21615 0.95471 1.00683 0.97398 1.21538 0.95492 1.01270 0.97691 1.21941 1.01599 0.99328 0.94162 1.21113 0.93997 0.81352 0.99525 0.88826 1.45862 1.16724 1.10832 1.61366 1.19896 0.82777 0.88681 0.79007 1.90785 1.55725 1.47690 1.44883 1.19972 0.81917 0.89359 0.79636 1.90702 1.55659 1.47119 1.43896 1.42006 1.16610 1.07199 1.58846 1.19019 0.93887 0.84566 1.02770 1.21509 1.04169 0.89683 1.16321 1.22581 0.87631 1.00184 0.99279 1.49172 1.13965 1.03542 1.42966 1.19800 0.80848 0.87684 0.97697 1.21250 0.91456 1.13220 1.30897 0.91257 1.24945 0.99291 0.94726 0.95105 1.69915 1.27042 1.18750 1.37575 0.86313 0.81887 0.78448 0.79776 1.20287 1.20977 1.19709 1.77409 1.16382 0.92535 1.26254 1.21918 0.93324 1.02218 0.98530 0.92519 0.92526 0.92632 0.91817 0.91824 0.91758 0.91714 0.90699 0.91108 0.75018 0.73964 0.82176 0.81239 0.92366 0.93543 0.92291 0.90928 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.19 37.16 0.34 -0.34 16 2 C -0.10 -0.51 2.55 -90.62 -0.23 -0.74 16 3 H 0.07 0.42 6.50 -51.93 -0.34 0.08 16 4 C -0.11 -0.62 5.20 -26.73 -0.14 -0.76 16 5 C -0.12 -0.82 5.77 -26.73 -0.15 -0.97 16 6 C -0.13 -0.95 5.60 -26.73 -0.15 -1.10 16 7 C 0.14 1.06 2.78 -67.91 -0.19 0.88 16 8 H 0.09 0.78 7.58 -51.92 -0.39 0.39 16 9 N -0.69 -6.33 4.23 -54.25 -0.23 -6.55 16 10 C 0.52 6.35 7.85 -11.64 -0.09 6.26 16 11 O -0.52 -7.31 16.14 5.49 0.09 -7.22 16 12 C 0.51 7.47 7.85 -11.63 -0.09 7.38 16 13 O -0.50 -7.84 13.60 5.47 0.07 -7.77 16 14 N -0.60 -9.82 5.43 -11.58 -0.06 -9.88 16 15 C 0.25 5.01 8.10 -154.55 -1.25 3.75 16 16 C -0.29 -5.44 9.60 -39.82 -0.38 -5.83 16 17 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 18 N -0.31 -7.20 3.67 -62.56 -0.23 -7.43 16 19 C 0.26 6.45 6.26 -5.19 -0.03 6.42 16 20 C -0.53 -14.66 9.24 -34.44 -0.32 -14.98 16 21 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -25.17 13.29 55.43 0.74 -24.44 16 24 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 28 N -0.29 -6.78 12.42 31.41 0.39 -6.39 16 29 C -0.12 -0.65 4.89 -26.71 -0.13 -0.78 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.51 7.60 -51.93 -0.39 0.12 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.41 3.43 6.34 -40.82 -0.26 3.17 16 40 H 0.42 6.39 8.29 -40.82 -0.34 6.05 16 41 H 0.16 2.86 5.91 -52.49 -0.31 2.55 16 42 H 0.17 2.62 8.06 -52.49 -0.42 2.20 16 43 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 44 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 385.45 15.07 5.81 5.81 Total: -1.00 -31.32 385.45 -8.63 -39.94 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.07 Total: 5.94 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -3.11 Total: 1.63 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.60 Total: -54.69 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.16 Total: -14.99 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.32 -8.63 -39.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086447757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.642 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds