Wall clock time and date at job start Tue Mar 31 2020 19:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46939 * 2 1 4 4 C 1.52999 * 109.47070 * 119.99466 * 2 1 3 5 5 C 1.53003 * 109.47001 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.46790 * 299.99737 * 5 4 2 7 7 C 1.53001 * 109.46800 * 60.00500 * 6 5 4 8 8 H 1.09009 * 109.47054 * 179.97438 * 7 6 5 9 9 N 1.46499 * 109.47410 * 59.99765 * 7 6 5 10 10 C 1.34774 * 119.99845 * 85.00236 * 9 7 6 11 11 O 1.21356 * 120.00145 * 359.97438 * 10 9 7 12 12 C 1.49346 * 119.99606 * 180.02562 * 10 9 7 13 13 O 1.21378 * 120.00278 * 359.97438 * 12 10 9 14 14 N 1.34783 * 119.99620 * 179.97438 * 12 10 9 15 15 C 1.39931 * 119.99530 * 179.97438 * 14 12 10 16 16 C 1.40457 * 125.98593 * 0.02562 * 15 14 12 17 17 C 1.35212 * 107.87275 * 179.78843 * 16 15 14 18 18 N 1.34996 * 107.87169 * 0.36629 * 17 16 15 19 19 C 1.46499 * 125.96836 * 179.89597 * 18 17 16 20 20 C 1.50701 * 109.46992 * 124.71253 * 19 18 17 21 21 H 1.07998 * 120.00129 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99861 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99913 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99734 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47094 * 90.00289 * 24 22 20 26 26 H 1.48505 * 109.47195 * 210.00171 * 24 22 20 27 27 H 1.48493 * 109.47449 * 330.00136 * 24 22 20 28 28 N 1.31279 * 125.97764 * 180.02562 * 15 14 12 29 29 C 1.52996 * 109.47100 * 239.99671 * 2 1 3 30 30 H 1.08995 * 109.47278 * 300.00292 * 1 2 3 31 31 H 1.09001 * 109.46960 * 60.00586 * 1 2 3 32 32 H 1.09004 * 109.46939 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46826 * 60.00130 * 4 2 1 34 34 H 1.08995 * 109.47268 * 300.00248 * 4 2 1 35 35 H 1.09004 * 109.46947 * 180.02562 * 5 4 2 36 36 H 1.08994 * 109.47042 * 59.99600 * 5 4 2 37 37 H 1.08996 * 109.47444 * 300.00503 * 6 5 4 38 38 H 1.08999 * 109.46836 * 180.02562 * 6 5 4 39 39 H 0.97002 * 120.00059 * 264.99621 * 9 7 6 40 40 H 0.96993 * 120.00331 * 359.97438 * 14 12 10 41 41 H 1.08000 * 126.06149 * 0.02562 * 16 15 14 42 42 H 1.07993 * 126.06591 * 180.25640 * 17 16 15 43 43 H 1.09002 * 109.47391 * 4.71243 * 19 18 17 44 44 H 1.09001 * 109.46813 * 244.71299 * 19 18 17 45 45 H 0.97002 * 119.99768 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.47424 * 60.00027 * 29 2 1 47 47 H 1.08996 * 109.47221 * 300.00129 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5701 -0.7206 1.2496 6 6 4.0805 -1.4416 0.0004 7 6 3.5705 -0.7204 -1.2489 8 1 3.9345 -1.2339 -2.1389 9 7 4.0584 0.6609 -1.2487 10 6 5.2803 0.9441 -1.7418 11 8 5.9766 0.0547 -2.1855 12 6 5.7778 2.3522 -1.7411 13 8 5.0816 3.2417 -1.2969 14 7 7.0000 2.6353 -2.2338 15 6 7.4660 3.9548 -2.2336 16 6 6.7695 5.0759 -1.7532 17 6 7.5585 6.1602 -1.9264 18 7 8.7082 5.7482 -2.5016 19 6 9.8416 6.6017 -2.8668 20 6 11.0953 6.0779 -2.2150 21 1 11.0523 5.1971 -1.5914 22 6 12.2975 6.7225 -2.4155 23 7 12.3500 7.7947 -3.1752 24 14 13.8517 6.0728 -1.6081 25 1 14.5084 5.0958 -2.5133 26 1 14.7795 7.2011 -1.3408 27 1 13.5028 5.4051 -0.3285 28 7 8.6307 4.3614 -2.6824 29 6 2.0400 -0.7213 -1.2492 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6767 -1.7487 1.2493 34 1 1.6767 -0.2073 2.1392 35 1 3.9334 -1.2347 2.1394 36 1 3.9330 0.3072 1.2497 37 1 3.7175 -2.4694 0.0002 38 1 5.1705 -1.4416 0.0008 39 1 3.5019 1.3718 -0.8938 40 1 7.5566 1.9245 -2.5884 41 1 5.7807 5.0720 -1.3188 42 1 7.3120 7.1758 -1.6545 43 1 9.6538 7.6202 -2.5271 44 1 9.9658 6.5969 -3.9497 45 1 13.1958 8.2484 -3.3160 46 1 1.6767 -0.2076 -2.1392 47 1 1.6767 -1.7489 -1.2491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086447757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:59 Heat of formation + Delta-G solvation = -25.426879 kcal Electronic energy + Delta-G solvation = -28220.500324 eV Core-core repulsion = 24210.662660 eV Total energy + Delta-G solvation = -4009.837664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.48319 -41.70512 -40.31528 -39.08396 -36.57281 -35.45734 -35.00820 -33.09453 -32.84090 -31.04355 -31.02789 -28.81707 -27.27292 -26.65810 -24.77185 -23.49279 -22.86337 -22.19707 -21.95330 -21.10026 -20.07080 -19.56562 -18.70994 -18.20760 -17.72410 -17.22730 -16.92224 -16.63680 -16.38272 -16.16005 -15.90285 -15.48749 -15.39256 -14.98118 -14.66451 -14.58820 -14.27456 -14.18959 -13.88278 -13.72250 -13.38346 -13.22798 -13.10223 -13.01746 -12.80246 -12.69346 -12.60302 -12.39798 -12.31890 -12.14491 -11.87176 -11.65835 -11.44631 -11.42931 -11.13686 -10.98964 -10.78616 -10.72964 -10.25397 -9.84346 -9.22635 -8.34522 -6.47955 0.04781 0.87151 1.13170 1.37325 1.38786 1.49588 1.74326 1.85173 2.25659 2.33510 2.60307 2.97781 3.24718 3.71010 3.75718 3.82074 3.90613 4.13950 4.21482 4.22694 4.44883 4.48377 4.54672 4.62721 4.67740 4.78308 4.83152 4.85593 4.87743 4.93757 4.95997 5.02210 5.03245 5.09388 5.14596 5.23884 5.29078 5.37930 5.43452 5.47192 5.55322 5.58010 5.74570 5.77656 5.86425 6.16648 6.24805 6.56266 6.63340 6.80018 6.95722 7.21880 8.73309 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023614 B = 0.002056 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.449068 B =13616.314485 C =14087.331793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.063 0.937 4 C -0.110 4.110 5 C -0.121 4.121 6 C -0.129 4.129 7 C 0.141 3.859 8 H 0.087 0.913 9 N -0.675 5.675 10 C 0.523 3.477 11 O -0.536 6.536 12 C 0.515 3.485 13 O -0.508 6.508 14 N -0.601 5.601 15 C 0.258 3.742 16 C -0.288 4.288 17 C 0.061 3.939 18 N -0.339 5.339 19 C 0.271 3.729 20 C -0.549 4.549 21 H 0.051 0.949 22 C 0.019 3.981 23 N -0.919 5.919 24 Si 0.970 3.030 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.273 1.273 28 N -0.342 5.342 29 C -0.115 4.115 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.093 0.907 38 H 0.047 0.953 39 H 0.418 0.582 40 H 0.427 0.573 41 H 0.176 0.824 42 H 0.207 0.793 43 H 0.063 0.937 44 H 0.023 0.977 45 H 0.273 0.727 46 H 0.075 0.925 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.370 -17.207 7.465 31.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 H 0.081 0.919 4 C -0.147 4.147 5 C -0.159 4.159 6 C -0.167 4.167 7 C 0.038 3.962 8 H 0.105 0.895 9 N -0.329 5.329 10 C 0.303 3.697 11 O -0.413 6.413 12 C 0.296 3.704 13 O -0.381 6.381 14 N -0.250 5.250 15 C 0.004 3.996 16 C -0.318 4.318 17 C -0.088 4.088 18 N -0.122 5.122 19 C 0.152 3.848 20 C -0.587 4.587 21 H 0.070 0.930 22 C -0.181 4.181 23 N -0.557 5.557 24 Si 0.795 3.205 25 H -0.200 1.200 26 H -0.196 1.196 27 H -0.198 1.198 28 N -0.173 5.173 29 C -0.152 4.152 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.066 0.934 39 H 0.257 0.743 40 H 0.266 0.734 41 H 0.193 0.807 42 H 0.224 0.776 43 H 0.081 0.919 44 H 0.041 0.959 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -24.109 -17.367 6.826 30.487 hybrid contribution 0.659 0.302 0.430 0.843 sum -23.450 -17.065 7.256 29.896 Atomic orbital electron populations 1.21792 0.94024 1.02401 1.01981 1.21170 0.96478 0.99206 0.94667 0.91892 1.21587 0.94191 1.01412 0.97529 1.21525 0.96622 1.00239 0.97521 1.21919 1.00190 1.00461 0.94168 1.21324 0.95579 0.79908 0.99425 0.89508 1.45906 1.15352 1.12053 1.59555 1.19459 0.83594 0.87138 0.79537 1.90787 1.56519 1.47655 1.46346 1.20442 0.81044 0.90411 0.78499 1.90678 1.55690 1.47785 1.43943 1.42132 1.17407 1.06061 1.59446 1.19340 0.93100 0.86163 1.01030 1.21747 1.04621 0.89238 1.16227 1.23252 0.86075 1.02051 0.97416 1.48917 1.14585 1.03596 1.45065 1.19394 0.81147 0.88201 0.96014 1.21394 0.93114 1.12931 1.31227 0.93047 1.25715 1.02066 0.94876 0.95490 1.69984 1.28057 1.19472 1.38216 0.85367 0.78340 0.78175 0.78651 1.19954 1.19568 1.19807 1.77322 1.18358 0.92989 1.28597 1.21904 0.91234 1.03407 0.98698 0.92552 0.92500 0.91846 0.90697 0.91668 0.91537 0.93244 0.88826 0.93387 0.74330 0.73439 0.80663 0.77593 0.91873 0.95910 0.91809 0.90616 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.19 71.98 0.66 -0.33 16 2 C -0.10 -0.80 2.55 -10.79 -0.03 -0.83 16 3 H 0.06 0.63 6.50 -2.39 -0.02 0.62 16 4 C -0.11 -0.94 5.20 30.59 0.16 -0.78 16 5 C -0.12 -1.46 5.77 30.60 0.18 -1.28 16 6 C -0.13 -1.68 5.60 30.60 0.17 -1.50 16 7 C 0.14 1.86 2.78 45.01 0.13 1.99 16 8 H 0.09 1.34 7.58 -2.38 -0.02 1.32 16 9 N -0.67 -11.57 4.23 -443.89 -1.88 -13.45 16 10 C 0.52 12.57 7.85 87.24 0.68 13.26 16 11 O -0.54 -15.06 16.14 -3.26 -0.05 -15.12 16 12 C 0.52 14.75 7.85 87.24 0.69 15.43 16 13 O -0.51 -15.32 13.60 -3.33 -0.05 -15.37 16 14 N -0.60 -19.76 5.43 -308.89 -1.68 -21.44 16 15 C 0.26 10.33 8.10 133.40 1.08 11.41 16 16 C -0.29 -10.70 9.60 22.11 0.21 -10.49 16 17 C 0.06 2.29 11.43 83.51 0.95 3.25 16 18 N -0.34 -15.77 3.67 -351.85 -1.29 -17.06 16 19 C 0.27 13.94 6.26 85.63 0.54 14.47 16 20 C -0.55 -30.97 9.24 25.60 0.24 -30.74 16 21 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 22 C 0.02 1.06 5.46 84.66 0.46 1.52 16 23 N -0.92 -51.91 13.29 21.45 0.28 -51.63 16 24 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 27 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 28 N -0.34 -16.07 12.42 -54.53 -0.68 -16.75 16 29 C -0.11 -0.94 4.89 30.61 0.15 -0.79 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.05 0.74 7.60 -2.39 -0.02 0.72 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.42 6.38 6.34 -92.71 -0.59 5.79 16 40 H 0.43 13.15 8.29 -92.71 -0.77 12.38 16 41 H 0.18 5.96 5.91 -2.91 -0.02 5.94 16 42 H 0.21 5.95 8.06 -2.91 -0.02 5.92 16 43 H 0.06 3.13 8.07 -2.39 -0.02 3.11 16 44 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 46 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -67.48 385.45 2.61 -64.88 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: -0.35 Total: 25.40 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: 6.27 Total: 14.59 kcal Atomic # 7 Polarization: -115.08 SS G_CDS: -5.24 Total: -120.32 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.10 Total: -30.49 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -67.48 2.61 -64.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086447757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.450 kcal (2) G-P(sol) polarization free energy of solvation -67.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds