Wall clock time and date at job start Tue Mar 31 2020 19:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46970 * 2 1 4 4 C 1.52998 * 109.46641 * 240.00306 * 2 1 3 5 5 C 1.53003 * 109.46963 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47206 * 59.99956 * 5 4 2 7 7 C 1.53001 * 109.46681 * 299.99947 * 6 5 4 8 8 H 1.08997 * 109.46622 * 179.97438 * 7 6 5 9 9 N 1.46489 * 109.47299 * 300.00079 * 7 6 5 10 10 C 1.34787 * 120.00156 * 274.99958 * 9 7 6 11 11 O 1.21357 * 119.99421 * 0.02562 * 10 9 7 12 12 C 1.49337 * 120.00135 * 180.02562 * 10 9 7 13 13 O 1.21385 * 120.00392 * 359.97438 * 12 10 9 14 14 N 1.34775 * 119.99812 * 180.02562 * 12 10 9 15 15 C 1.39938 * 120.00012 * 179.97438 * 14 12 10 16 16 C 1.40459 * 125.97852 * 0.02562 * 15 14 12 17 17 C 1.35216 * 107.86669 * 180.28367 * 16 15 14 18 18 N 1.34990 * 107.87446 * 359.56906 * 17 16 15 19 19 C 1.46495 * 125.97204 * 180.16455 * 18 17 16 20 20 C 1.50696 * 109.47300 * 125.28600 * 19 18 17 21 21 H 1.08003 * 120.00183 * 0.02562 * 20 19 18 22 22 C 1.37885 * 120.00206 * 179.97438 * 20 19 18 23 23 N 1.31509 * 119.99662 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99765 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.46991 * 90.00292 * 24 22 20 26 26 H 1.48498 * 109.46749 * 210.00146 * 24 22 20 27 27 H 1.48500 * 109.47284 * 329.99943 * 24 22 20 28 28 N 1.31270 * 125.98095 * 180.02562 * 15 14 12 29 29 C 1.52999 * 109.47193 * 120.00372 * 2 1 3 30 30 H 1.09002 * 109.47009 * 299.99429 * 1 2 3 31 31 H 1.08998 * 109.47779 * 60.00038 * 1 2 3 32 32 H 1.09008 * 109.47288 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47198 * 299.99395 * 4 2 1 34 34 H 1.08997 * 109.47850 * 59.99917 * 4 2 1 35 35 H 1.09005 * 109.47231 * 179.97438 * 5 4 2 36 36 H 1.08996 * 109.46913 * 299.99857 * 5 4 2 37 37 H 1.08993 * 109.46898 * 180.02562 * 6 5 4 38 38 H 1.08999 * 109.46855 * 59.99808 * 6 5 4 39 39 H 0.97001 * 120.00786 * 95.00789 * 9 7 6 40 40 H 0.97000 * 120.00222 * 359.97438 * 14 12 10 41 41 H 1.08002 * 126.06434 * 0.02562 * 16 15 14 42 42 H 1.07993 * 126.05940 * 179.70993 * 17 16 15 43 43 H 1.09010 * 109.47284 * 245.28563 * 19 18 17 44 44 H 1.09003 * 109.47255 * 5.28368 * 19 18 17 45 45 H 0.97002 * 119.99738 * 180.02562 * 23 22 20 46 46 H 1.08996 * 109.47467 * 59.99932 * 29 2 1 47 47 H 1.08996 * 109.46811 * 299.99537 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7207 -1.2497 6 6 4.0805 -1.4416 -0.0005 7 6 3.5705 -0.7204 1.2488 8 1 3.9339 -1.2342 2.1387 9 7 4.0583 0.6609 1.2485 10 6 5.2804 0.9442 1.7414 11 8 5.9767 0.0549 2.1851 12 6 5.7775 2.3525 1.7416 13 8 5.0811 3.2420 1.2974 14 7 6.9996 2.6356 2.2341 15 6 7.4656 3.9551 2.2339 16 6 6.7686 5.0763 1.7544 17 6 7.5585 6.1603 1.9256 18 7 8.7085 5.7484 2.5000 19 6 9.8423 6.6017 2.8643 20 6 10.1701 6.4062 4.3221 21 1 9.5920 5.7151 4.9177 22 6 11.2088 7.1088 4.8955 23 7 11.9129 7.9499 4.1701 24 14 11.6146 6.8670 6.7028 25 1 12.6062 5.7708 6.8450 26 1 12.1826 8.1230 7.2548 27 1 10.3776 6.5149 7.4451 28 7 8.6307 4.3616 2.6816 29 6 2.0400 -0.7213 1.2492 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1393 35 1 3.9332 -1.2349 -2.1395 36 1 3.9328 0.3071 -1.2499 37 1 5.1704 -1.4409 -0.0006 38 1 3.7175 -2.4694 -0.0003 39 1 3.5019 1.3718 0.8936 40 1 7.5563 1.9248 2.5888 41 1 5.7791 5.0726 1.3216 42 1 7.3120 7.1759 1.6534 43 1 10.7079 6.3341 2.2582 44 1 9.5832 7.6455 2.6869 45 1 12.6439 8.4440 4.5734 46 1 1.6767 -1.7490 1.2492 47 1 1.6767 -0.2075 2.1391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086447758.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:03 Heat of formation + Delta-G solvation = -6.280678 kcal Electronic energy + Delta-G solvation = -28205.638287 eV Core-core repulsion = 24196.630864 eV Total energy + Delta-G solvation = -4009.007423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.21034 -40.47096 -39.33053 -38.12001 -35.25174 -34.29063 -33.35783 -32.55730 -31.05033 -30.39846 -29.42038 -27.03679 -26.84464 -25.34799 -23.11682 -22.75805 -21.82167 -21.47770 -20.51436 -19.73195 -19.42882 -18.38344 -16.87396 -16.61253 -16.46519 -16.20096 -15.77737 -15.70522 -15.25864 -14.87602 -14.64585 -14.43418 -14.15872 -14.08863 -13.77521 -13.53438 -12.97086 -12.90160 -12.67717 -12.59347 -12.41666 -12.30129 -12.24352 -11.96765 -11.88616 -11.53575 -11.39407 -11.05789 -10.95829 -10.88512 -10.63641 -10.54112 -10.48071 -10.27775 -10.03783 -9.57878 -9.53814 -9.46310 -8.65212 -8.23546 -7.58575 -6.26316 -4.31396 1.20780 2.06772 2.66158 3.03226 3.19926 3.23803 3.29590 3.35216 3.66173 3.85529 4.21201 4.24383 4.28239 4.30328 4.40183 4.65065 4.72877 4.95263 4.99757 5.02121 5.09083 5.17779 5.23617 5.27277 5.40780 5.42267 5.47646 5.56272 5.64892 5.70934 5.76213 5.81255 5.84666 5.87815 6.00657 6.07913 6.10318 6.31979 6.40848 6.78785 6.91842 7.01688 7.24103 7.36791 7.63319 7.69084 7.84581 7.95445 7.97338 8.53641 8.77203 9.34445 10.82506 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025904 B = 0.002014 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.643363 B =13898.021760 C =14236.977982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.071 0.929 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.132 4.132 7 C 0.144 3.856 8 H 0.094 0.906 9 N -0.693 5.693 10 C 0.516 3.484 11 O -0.516 6.516 12 C 0.511 3.489 13 O -0.501 6.501 14 N -0.598 5.598 15 C 0.250 3.750 16 C -0.286 4.286 17 C 0.053 3.947 18 N -0.314 5.314 19 C 0.257 3.743 20 C -0.530 4.530 21 H 0.069 0.931 22 C 0.062 3.938 23 N -0.895 5.895 24 Si 0.909 3.091 25 H -0.277 1.277 26 H -0.284 1.284 27 H -0.272 1.272 28 N -0.294 5.294 29 C -0.122 4.122 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.412 0.588 40 H 0.423 0.577 41 H 0.161 0.839 42 H 0.170 0.830 43 H 0.046 0.954 44 H 0.059 0.941 45 H 0.267 0.733 46 H 0.082 0.918 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.881 -16.844 -10.476 29.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 H 0.089 0.911 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.170 4.170 7 C 0.040 3.960 8 H 0.112 0.888 9 N -0.348 5.348 10 C 0.296 3.704 11 O -0.391 6.391 12 C 0.291 3.709 13 O -0.374 6.374 14 N -0.247 5.247 15 C -0.002 4.002 16 C -0.317 4.317 17 C -0.097 4.097 18 N -0.096 5.096 19 C 0.140 3.860 20 C -0.568 4.568 21 H 0.087 0.913 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.736 3.264 25 H -0.203 1.203 26 H -0.210 1.210 27 H -0.197 1.197 28 N -0.126 5.126 29 C -0.160 4.160 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.250 0.750 40 H 0.260 0.740 41 H 0.178 0.822 42 H 0.188 0.812 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.100 0.900 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.532 -17.002 -9.892 28.434 hybrid contribution -0.297 0.262 0.608 0.726 sum -20.829 -16.740 -9.284 28.289 Atomic orbital electron populations 1.21820 0.94795 1.01871 1.01961 1.21172 0.95896 0.99697 0.94787 0.91083 1.21617 0.95465 1.00688 0.97400 1.21537 0.95504 1.01249 0.97680 1.21941 1.01576 0.99334 0.94162 1.21109 0.94005 0.81358 0.99525 0.88824 1.45861 1.16713 1.10827 1.61383 1.19898 0.82791 0.88678 0.78993 1.90785 1.55752 1.47696 1.44844 1.19968 0.81901 0.89360 0.79654 1.90704 1.55604 1.47117 1.43958 1.42007 1.16602 1.07210 1.58837 1.19019 0.94170 0.84548 1.02504 1.21512 1.03998 0.89696 1.16472 1.22582 0.87770 1.00102 0.99238 1.49167 1.14538 1.03571 1.42361 1.19798 0.81111 0.87517 0.97597 1.21246 1.16549 1.25413 0.93597 0.91254 1.24948 0.95408 0.94619 0.99096 1.69915 1.20541 1.26280 1.36549 0.86311 0.78779 0.77647 0.83680 1.20288 1.20979 1.19704 1.77407 1.17121 0.92618 1.25433 1.21922 0.93328 1.02221 0.98543 0.92516 0.92522 0.92632 0.91815 0.91828 0.91773 0.91727 0.91119 0.90695 0.75018 0.73963 0.82173 0.81239 0.93569 0.92366 0.92292 0.89975 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.19 37.16 0.34 -0.35 16 2 C -0.10 -0.51 2.55 -90.62 -0.23 -0.74 16 3 H 0.07 0.42 6.50 -51.93 -0.34 0.08 16 4 C -0.11 -0.61 5.20 -26.73 -0.14 -0.74 16 5 C -0.12 -0.80 5.77 -26.73 -0.15 -0.95 16 6 C -0.13 -0.93 5.60 -26.73 -0.15 -1.08 16 7 C 0.14 1.06 2.78 -67.91 -0.19 0.87 16 8 H 0.09 0.79 7.58 -51.93 -0.39 0.39 16 9 N -0.69 -6.33 4.23 -54.25 -0.23 -6.55 16 10 C 0.52 6.35 7.85 -11.63 -0.09 6.26 16 11 O -0.52 -7.31 16.14 5.49 0.09 -7.22 16 12 C 0.51 7.47 7.85 -11.64 -0.09 7.37 16 13 O -0.50 -7.84 13.60 5.47 0.07 -7.77 16 14 N -0.60 -9.82 5.43 -11.58 -0.06 -9.88 16 15 C 0.25 5.01 8.10 -154.55 -1.25 3.75 16 16 C -0.29 -5.44 9.60 -39.82 -0.38 -5.82 16 17 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 18 N -0.31 -7.20 3.67 -62.56 -0.23 -7.43 16 19 C 0.26 6.45 6.26 -5.20 -0.03 6.42 16 20 C -0.53 -14.66 9.24 -34.44 -0.32 -14.98 16 21 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 24 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 28 N -0.29 -6.78 12.42 31.41 0.39 -6.39 16 29 C -0.12 -0.65 4.89 -26.70 -0.13 -0.79 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.23 8.14 -51.92 -0.42 -0.19 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.50 7.60 -51.93 -0.39 0.10 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.41 3.43 6.34 -40.82 -0.26 3.17 16 40 H 0.42 6.39 8.29 -40.82 -0.34 6.05 16 41 H 0.16 2.86 5.91 -52.49 -0.31 2.55 16 42 H 0.17 2.62 8.06 -52.49 -0.42 2.20 16 43 H 0.05 1.22 8.14 -51.92 -0.42 0.80 16 44 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 45 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 385.45 15.07 5.81 5.81 Total: -1.00 -31.32 385.45 -8.63 -39.95 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.07 Total: 5.89 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -3.11 Total: 1.67 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.61 Total: -54.69 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.16 Total: -14.99 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.32 -8.63 -39.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086447758.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.669 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds