Wall clock time and date at job start Tue Mar 31 2020 18:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50710 * 109.47003 * 2 1 4 4 O 1.21278 * 119.99441 * 359.97438 * 3 2 1 5 5 N 1.34768 * 120.00135 * 180.02562 * 3 2 1 6 6 C 1.46931 * 120.63199 * 6.11090 * 5 3 2 7 7 C 1.53197 * 108.77150 * 233.58853 * 6 5 3 8 8 C 1.53037 * 109.31355 * 305.35884 * 7 6 5 9 9 C 1.53082 * 109.65449 * 61.30701 * 8 7 6 10 10 C 1.46931 * 120.62833 * 186.09133 * 5 3 2 11 11 H 1.09003 * 109.58198 * 246.34164 * 10 5 3 12 12 C 1.50688 * 109.58769 * 6.62140 * 10 5 3 13 13 O 1.21291 * 120.00187 * 61.43803 * 12 10 5 14 14 N 1.34778 * 120.00208 * 241.44018 * 12 10 5 15 15 C 1.40159 * 120.00276 * 180.02562 * 14 12 10 16 16 C 1.40416 * 125.97224 * 359.97438 * 15 14 12 17 17 C 1.35234 * 107.86790 * 179.97438 * 16 15 14 18 18 N 1.34967 * 107.86045 * 0.02562 * 17 16 15 19 19 C 1.46506 * 125.97322 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.47174 * 125.00208 * 19 18 17 21 21 H 1.07998 * 120.00124 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99752 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99523 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 120.00455 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.47203 * 89.99780 * 24 22 20 26 26 H 1.48499 * 109.46990 * 330.00107 * 24 22 20 27 27 H 1.48500 * 109.47480 * 210.00026 * 24 22 20 28 28 N 1.31217 * 125.97862 * 180.25915 * 15 14 12 29 29 H 1.09005 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47460 * 299.99536 * 1 2 3 31 31 H 1.09002 * 109.47425 * 60.00368 * 1 2 3 32 32 H 1.08999 * 109.47460 * 240.00464 * 2 1 3 33 33 H 1.09002 * 109.47425 * 119.99632 * 2 1 3 34 34 H 1.08995 * 109.58294 * 353.36946 * 6 5 3 35 35 H 1.09000 * 109.58600 * 113.80155 * 6 5 3 36 36 H 1.08996 * 109.49873 * 65.31533 * 7 6 5 37 37 H 1.09000 * 109.49305 * 185.41385 * 7 6 5 38 38 H 1.08998 * 109.45984 * 181.38957 * 8 7 6 39 39 H 1.08999 * 109.46727 * 301.36570 * 8 7 6 40 40 H 1.09005 * 109.62208 * 178.82844 * 9 8 7 41 41 H 1.08996 * 109.39061 * 58.71899 * 9 8 7 42 42 H 0.97001 * 119.99700 * 359.97438 * 14 12 10 43 43 H 1.07997 * 126.06347 * 359.96367 * 16 15 14 44 44 H 1.07996 * 126.06949 * 180.02562 * 17 16 15 45 45 H 1.08998 * 109.47280 * 4.99513 * 19 18 17 46 46 H 1.09007 * 109.46893 * 244.99513 * 19 18 17 47 47 H 0.97000 * 119.99656 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3573 1.6672 -0.0005 6 6 4.3230 0.5682 -0.1357 7 6 5.3189 0.6413 1.0261 8 6 5.9526 2.0338 1.0627 9 6 4.8663 3.0881 1.2907 10 6 3.8635 3.0400 0.1336 11 1 4.3575 3.3392 -0.7908 12 6 2.7172 3.9755 0.4194 13 8 2.0543 3.8329 1.4250 14 7 2.4286 4.9707 -0.4425 15 6 1.3627 5.8411 -0.1764 16 6 0.5173 5.7916 0.9436 17 6 -0.3791 6.7980 0.8316 18 7 -0.1157 7.4614 -0.3139 19 6 -0.8484 8.6233 -0.8235 20 6 0.1149 9.7555 -1.0710 21 1 1.1674 9.6231 -0.8686 22 6 -0.3477 10.9604 -1.5559 23 7 0.4929 11.9487 -1.7714 24 14 -2.1680 11.1894 -1.9067 25 1 -2.8461 11.7022 -0.6890 26 1 -2.7652 9.8860 -2.2939 27 1 -2.3400 12.1617 -3.0158 28 7 0.9772 6.8415 -0.9330 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7970 -0.3860 -0.1065 35 1 4.8567 0.6649 -1.0811 36 1 4.7973 0.4542 1.9647 37 1 6.0971 -0.1089 0.8859 38 1 6.6798 2.0807 1.8733 39 1 6.4528 2.2303 0.1143 40 1 5.3208 4.0778 1.3373 41 1 4.3506 2.8794 2.2280 42 1 2.9589 5.0849 -1.2466 43 1 0.5729 5.0766 1.7510 44 1 -1.1661 7.0296 1.5340 45 1 -1.5930 8.9334 -0.0904 46 1 -1.3455 8.3586 -1.7568 47 1 0.1675 12.7966 -2.1122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117710585.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:02 Heat of formation + Delta-G solvation = 21.863721 kcal Electronic energy + Delta-G solvation = -29438.423899 eV Core-core repulsion = 25430.636909 eV Total energy + Delta-G solvation = -4007.786990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.21980 -40.26773 -38.47022 -37.63124 -34.54697 -33.49310 -33.20402 -32.79853 -31.71465 -30.95575 -29.22272 -27.24798 -26.35364 -24.49540 -24.23531 -22.51504 -21.48862 -21.05878 -20.21109 -19.48327 -18.95745 -17.61553 -16.99275 -16.63048 -16.52438 -16.11465 -15.75359 -15.22541 -14.82190 -14.72502 -14.61148 -14.21419 -14.10862 -13.96957 -13.73647 -13.34374 -13.17632 -12.90658 -12.71494 -12.45066 -12.37327 -12.17881 -12.00260 -11.90090 -11.85596 -11.50736 -11.37078 -11.24891 -11.08974 -11.02385 -10.69016 -10.52156 -9.91046 -9.85570 -9.63422 -9.44269 -9.30431 -8.91634 -8.70934 -8.00005 -7.32111 -6.18067 -4.19441 2.24598 2.50921 2.78332 2.91529 3.17018 3.20090 3.27840 3.28421 3.83655 3.92048 4.25837 4.28362 4.32284 4.46452 4.52837 4.62187 4.77341 4.80318 4.83302 4.86013 5.00897 5.08115 5.10426 5.26702 5.32759 5.44333 5.47432 5.58117 5.59645 5.65313 5.68230 5.75418 5.84999 5.95268 6.06482 6.16039 6.40373 6.51297 6.63034 6.72910 6.81774 7.08947 7.33420 7.57503 7.76350 7.96168 8.02695 8.41805 8.54491 8.74492 8.92815 9.37637 10.94813 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019851 B = 0.002670 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.154138 B =10485.761381 C =11382.232074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.136 4.136 3 C 0.501 3.499 4 O -0.490 6.490 5 N -0.610 5.610 6 C 0.111 3.889 7 C -0.138 4.138 8 C -0.118 4.118 9 C -0.123 4.123 10 C 0.134 3.866 11 H 0.088 0.912 12 C 0.541 3.459 13 O -0.503 6.503 14 N -0.629 5.629 15 C 0.274 3.726 16 C -0.273 4.273 17 C 0.045 3.955 18 N -0.323 5.323 19 C 0.233 3.767 20 C -0.531 4.531 21 H 0.085 0.915 22 C 0.075 3.925 23 N -0.890 5.890 24 Si 0.873 3.127 25 H -0.272 1.272 26 H -0.264 1.264 27 H -0.280 1.280 28 N -0.304 5.304 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.406 0.594 43 H 0.160 0.840 44 H 0.166 0.834 45 H 0.048 0.952 46 H 0.040 0.960 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.633 -28.100 4.412 30.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C 0.290 3.710 4 O -0.362 6.362 5 N -0.348 5.348 6 C -0.012 4.012 7 C -0.176 4.176 8 C -0.155 4.155 9 C -0.162 4.162 10 C 0.027 3.973 11 H 0.106 0.894 12 C 0.327 3.673 13 O -0.375 6.375 14 N -0.277 5.277 15 C 0.020 3.980 16 C -0.305 4.305 17 C -0.104 4.104 18 N -0.104 5.104 19 C 0.114 3.886 20 C -0.569 4.569 21 H 0.103 0.897 22 C -0.128 4.128 23 N -0.527 5.527 24 Si 0.699 3.301 25 H -0.197 1.197 26 H -0.189 1.189 27 H -0.206 1.206 28 N -0.135 5.135 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.240 0.760 43 H 0.177 0.823 44 H 0.183 0.817 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.845 -26.769 3.964 28.469 hybrid contribution -0.627 -0.045 -0.006 0.629 sum 8.217 -26.813 3.958 28.322 Atomic orbital electron populations 1.21545 0.92831 1.01420 1.03781 1.21606 0.98760 0.93453 1.03772 1.20952 0.81503 0.92394 0.76197 1.90869 1.53928 1.44790 1.46651 1.48036 1.05853 1.06060 1.74817 1.21780 0.90881 0.89693 0.98833 1.21955 0.98683 0.97834 0.99149 1.21512 0.97408 0.93988 1.02615 1.21859 0.95747 1.00482 0.98097 1.21041 0.93515 0.82381 1.00326 0.89429 1.19655 0.84220 0.79945 0.83513 1.90609 1.48880 1.70278 1.27769 1.42301 1.30676 1.29381 1.25315 1.19013 0.91514 0.92244 0.95226 1.21492 1.00531 1.05257 1.03176 1.22510 1.01386 0.94862 0.91625 1.48524 1.22514 1.23762 1.15642 1.19997 0.91790 0.81451 0.95378 1.21131 0.96179 0.94648 1.44980 0.89665 1.24833 0.97839 0.95489 0.94662 1.69880 1.34602 1.03689 1.44556 0.86905 0.85510 0.78872 0.78823 1.19735 1.18853 1.20582 1.77354 1.04832 1.09978 1.21314 0.92203 0.91686 0.91931 0.89210 0.89068 0.89269 0.90985 0.91131 0.90425 0.90975 0.91429 0.89993 0.90004 0.75995 0.82300 0.81686 0.93469 0.94205 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.20 37.16 0.34 -0.94 16 2 C -0.14 -1.08 4.78 -27.88 -0.13 -1.21 16 3 C 0.50 6.06 7.39 -10.98 -0.08 5.98 16 4 O -0.49 -8.45 11.75 -19.10 -0.22 -8.67 16 5 N -0.61 -5.81 2.97 -166.53 -0.50 -6.31 16 6 C 0.11 0.57 6.35 -3.71 -0.02 0.55 16 7 C -0.14 -0.64 6.08 -26.61 -0.16 -0.80 16 8 C -0.12 -0.66 5.88 -26.67 -0.16 -0.82 16 9 C -0.12 -1.08 5.33 -26.59 -0.14 -1.22 16 10 C 0.13 1.44 3.31 -68.76 -0.23 1.21 16 11 H 0.09 0.75 7.92 -51.93 -0.41 0.34 16 12 C 0.54 8.64 4.34 -10.99 -0.05 8.59 16 13 O -0.50 -9.65 11.75 -19.11 -0.22 -9.87 16 14 N -0.63 -11.01 5.45 -11.13 -0.06 -11.07 16 15 C 0.27 6.01 8.11 -154.39 -1.25 4.76 16 16 C -0.27 -5.93 9.61 -39.83 -0.38 -6.31 16 17 C 0.05 0.96 11.44 -17.24 -0.20 0.76 16 18 N -0.32 -7.85 3.67 -62.56 -0.23 -8.08 16 19 C 0.23 5.83 5.33 -5.19 -0.03 5.80 16 20 C -0.53 -15.53 9.79 -34.44 -0.34 -15.86 16 21 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 22 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 23 N -0.89 -27.25 13.96 55.43 0.77 -26.48 16 24 Si 0.87 20.77 27.47 -169.99 -4.67 16.10 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 N -0.30 -7.50 12.43 31.44 0.39 -7.11 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 31 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.09 0.49 7.69 -51.93 -0.40 0.09 16 33 H 0.09 0.55 7.94 -51.93 -0.41 0.14 16 34 H 0.09 0.30 5.93 -51.93 -0.31 0.00 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.88 7.93 -51.93 -0.41 0.46 16 42 H 0.41 5.95 8.67 -40.82 -0.35 5.60 16 43 H 0.16 3.44 5.92 -52.49 -0.31 3.13 16 44 H 0.17 2.82 8.06 -52.49 -0.42 2.40 16 45 H 0.05 1.07 7.50 -51.93 -0.39 0.68 16 46 H 0.04 1.00 7.20 -51.92 -0.37 0.62 16 47 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 376.90 15.07 5.68 5.68 Total: -1.00 -38.40 376.90 -9.17 -47.57 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.18 Total: 5.66 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -2.93 Total: 2.57 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 0.38 Total: -59.04 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.45 Total: -18.54 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.40 -9.17 -47.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117710585.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.434 kcal (2) G-P(sol) polarization free energy of solvation -38.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds