Wall clock time and date at job start Tue Mar 31 2020 18:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50710 * 109.47003 * 2 1 4 4 O 1.21278 * 119.99441 * 359.97438 * 3 2 1 5 5 N 1.34768 * 120.00135 * 180.02562 * 3 2 1 6 6 C 1.46931 * 120.63199 * 6.11090 * 5 3 2 7 7 C 1.53197 * 108.77150 * 233.58853 * 6 5 3 8 8 C 1.53037 * 109.31355 * 305.35884 * 7 6 5 9 9 C 1.53082 * 109.65449 * 61.30701 * 8 7 6 10 10 C 1.46931 * 120.62833 * 186.09133 * 5 3 2 11 11 H 1.09003 * 109.58198 * 246.34164 * 10 5 3 12 12 C 1.50688 * 109.58769 * 6.62140 * 10 5 3 13 13 O 1.21291 * 120.00187 * 61.43803 * 12 10 5 14 14 N 1.34778 * 120.00208 * 241.44018 * 12 10 5 15 15 C 1.40159 * 120.00276 * 180.02562 * 14 12 10 16 16 C 1.40416 * 125.97224 * 359.97438 * 15 14 12 17 17 C 1.35234 * 107.86790 * 179.97438 * 16 15 14 18 18 N 1.34967 * 107.86045 * 0.02562 * 17 16 15 19 19 C 1.46506 * 125.97322 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.47174 * 125.00208 * 19 18 17 21 21 H 1.07998 * 120.00124 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99752 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99523 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 120.00455 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.47203 * 89.99780 * 24 22 20 26 26 H 1.48499 * 109.46990 * 330.00107 * 24 22 20 27 27 H 1.48500 * 109.47480 * 210.00026 * 24 22 20 28 28 N 1.31217 * 125.97862 * 180.25915 * 15 14 12 29 29 H 1.09005 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47460 * 299.99536 * 1 2 3 31 31 H 1.09002 * 109.47425 * 60.00368 * 1 2 3 32 32 H 1.08999 * 109.47460 * 240.00464 * 2 1 3 33 33 H 1.09002 * 109.47425 * 119.99632 * 2 1 3 34 34 H 1.08995 * 109.58294 * 353.36946 * 6 5 3 35 35 H 1.09000 * 109.58600 * 113.80155 * 6 5 3 36 36 H 1.08996 * 109.49873 * 65.31533 * 7 6 5 37 37 H 1.09000 * 109.49305 * 185.41385 * 7 6 5 38 38 H 1.08998 * 109.45984 * 181.38957 * 8 7 6 39 39 H 1.08999 * 109.46727 * 301.36570 * 8 7 6 40 40 H 1.09005 * 109.62208 * 178.82844 * 9 8 7 41 41 H 1.08996 * 109.39061 * 58.71899 * 9 8 7 42 42 H 0.97001 * 119.99700 * 359.97438 * 14 12 10 43 43 H 1.07997 * 126.06347 * 359.96367 * 16 15 14 44 44 H 1.07996 * 126.06949 * 180.02562 * 17 16 15 45 45 H 1.08998 * 109.47280 * 4.99513 * 19 18 17 46 46 H 1.09007 * 109.46893 * 244.99513 * 19 18 17 47 47 H 0.97000 * 119.99656 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3573 1.6672 -0.0005 6 6 4.3230 0.5682 -0.1357 7 6 5.3189 0.6413 1.0261 8 6 5.9526 2.0338 1.0627 9 6 4.8663 3.0881 1.2907 10 6 3.8635 3.0400 0.1336 11 1 4.3575 3.3392 -0.7908 12 6 2.7172 3.9755 0.4194 13 8 2.0543 3.8329 1.4250 14 7 2.4286 4.9707 -0.4425 15 6 1.3627 5.8411 -0.1764 16 6 0.5173 5.7916 0.9436 17 6 -0.3791 6.7980 0.8316 18 7 -0.1157 7.4614 -0.3139 19 6 -0.8484 8.6233 -0.8235 20 6 0.1149 9.7555 -1.0710 21 1 1.1674 9.6231 -0.8686 22 6 -0.3477 10.9604 -1.5559 23 7 0.4929 11.9487 -1.7714 24 14 -2.1680 11.1894 -1.9067 25 1 -2.8461 11.7022 -0.6890 26 1 -2.7652 9.8860 -2.2939 27 1 -2.3400 12.1617 -3.0158 28 7 0.9772 6.8415 -0.9330 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7970 -0.3860 -0.1065 35 1 4.8567 0.6649 -1.0811 36 1 4.7973 0.4542 1.9647 37 1 6.0971 -0.1089 0.8859 38 1 6.6798 2.0807 1.8733 39 1 6.4528 2.2303 0.1143 40 1 5.3208 4.0778 1.3373 41 1 4.3506 2.8794 2.2280 42 1 2.9589 5.0849 -1.2466 43 1 0.5729 5.0766 1.7510 44 1 -1.1661 7.0296 1.5340 45 1 -1.5930 8.9334 -0.0904 46 1 -1.3455 8.3586 -1.7568 47 1 0.1675 12.7966 -2.1122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117710585.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:01 Heat of formation + Delta-G solvation = -4.813820 kcal Electronic energy + Delta-G solvation = -29439.580724 eV Core-core repulsion = 25430.636909 eV Total energy + Delta-G solvation = -4008.943815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.39604 -41.72611 -39.70361 -38.40174 -36.15531 -35.17802 -34.27068 -33.53080 -33.12396 -32.13651 -30.96914 -29.06954 -27.23601 -25.34402 -25.07801 -24.22255 -22.82714 -21.79941 -21.71419 -20.96762 -19.81068 -19.12173 -18.62921 -18.15511 -17.55132 -17.30246 -16.78702 -16.55795 -16.31648 -15.89666 -15.48406 -15.23705 -15.16713 -15.05504 -14.82218 -14.56009 -14.46985 -14.33893 -13.90781 -13.85629 -13.83481 -13.46454 -13.04722 -12.98633 -12.63608 -12.56359 -12.47474 -12.29210 -12.05941 -12.05051 -11.84674 -11.71164 -11.60248 -11.55830 -11.41911 -10.88731 -10.69751 -10.54892 -9.76424 -9.67113 -9.05817 -8.39503 -6.49640 0.95228 1.29864 1.34949 1.38617 1.45865 1.50382 1.66546 1.96799 2.27209 2.34769 2.41907 2.92639 3.37230 3.71232 3.80527 3.83528 3.94530 4.04335 4.11685 4.16178 4.17964 4.22234 4.24187 4.49156 4.57630 4.66065 4.73309 4.81388 4.82117 4.84861 4.89428 4.92476 4.93875 5.03121 5.07551 5.13996 5.19449 5.22162 5.23468 5.32522 5.46502 5.49340 5.92208 6.01292 6.26396 6.34697 6.40996 6.55858 7.02413 7.13147 7.14495 7.32108 8.77789 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019851 B = 0.002670 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.154138 B =10485.761381 C =11382.232074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.487 3.513 4 O -0.553 6.553 5 N -0.605 5.605 6 C 0.103 3.897 7 C -0.134 4.134 8 C -0.113 4.113 9 C -0.120 4.120 10 C 0.137 3.863 11 H 0.114 0.886 12 C 0.537 3.463 13 O -0.537 6.537 14 N -0.629 5.629 15 C 0.278 3.722 16 C -0.288 4.288 17 C 0.056 3.944 18 N -0.346 5.346 19 C 0.240 3.760 20 C -0.547 4.547 21 H 0.026 0.974 22 C 0.015 3.985 23 N -0.941 5.941 24 Si 0.956 3.044 25 H -0.252 1.252 26 H -0.243 1.243 27 H -0.278 1.278 28 N -0.353 5.353 29 H 0.089 0.911 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.125 0.875 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.416 0.584 43 H 0.158 0.842 44 H 0.208 0.792 45 H 0.080 0.920 46 H 0.043 0.957 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.546 -31.048 4.234 32.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.277 3.723 4 O -0.431 6.431 5 N -0.342 5.342 6 C -0.018 4.018 7 C -0.172 4.172 8 C -0.150 4.150 9 C -0.158 4.158 10 C 0.030 3.970 11 H 0.131 0.869 12 C 0.325 3.675 13 O -0.412 6.412 14 N -0.279 5.279 15 C 0.023 3.977 16 C -0.320 4.320 17 C -0.092 4.092 18 N -0.128 5.128 19 C 0.121 3.879 20 C -0.585 4.585 21 H 0.044 0.956 22 C -0.184 4.184 23 N -0.580 5.580 24 Si 0.777 3.223 25 H -0.176 1.176 26 H -0.166 1.166 27 H -0.203 1.203 28 N -0.184 5.184 29 H 0.108 0.892 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.143 0.857 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.112 0.888 36 H 0.077 0.923 37 H 0.126 0.874 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.252 0.748 43 H 0.176 0.824 44 H 0.225 0.775 45 H 0.098 0.902 46 H 0.061 0.939 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.839 -29.789 3.793 31.304 hybrid contribution -0.429 0.783 0.113 0.900 sum 8.410 -29.007 3.905 30.453 Atomic orbital electron populations 1.21522 0.94308 1.02439 1.01179 1.21667 0.97388 0.91031 1.06543 1.21822 0.81856 0.93564 0.75070 1.90839 1.55608 1.46779 1.49869 1.48240 1.06023 1.06434 1.73475 1.22202 0.90446 0.89017 1.00093 1.21962 0.99115 0.97797 0.98352 1.21532 0.96281 0.93375 1.03852 1.21866 0.96030 1.01923 0.96022 1.21112 0.91427 0.82162 1.02260 0.86855 1.20699 0.84847 0.79504 0.82419 1.90566 1.50488 1.70845 1.29285 1.42585 1.29792 1.29199 1.26310 1.19433 0.91989 0.91647 0.94664 1.21630 1.01179 1.05798 1.03349 1.23173 1.01601 0.93587 0.90868 1.48465 1.23153 1.24306 1.16838 1.19870 0.91235 0.80282 0.96548 1.21213 0.94446 0.96973 1.45863 0.95574 1.25915 1.04210 0.94511 0.93725 1.70049 1.37762 1.04583 1.45622 0.85607 0.77653 0.79737 0.79338 1.17607 1.16603 1.20291 1.77269 1.06360 1.11623 1.23148 0.89197 0.94635 0.94251 0.85711 0.86509 0.86804 0.88846 0.92286 0.87438 0.90054 0.89775 0.90172 0.92498 0.74778 0.82445 0.77504 0.90184 0.93946 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.20 71.98 0.66 -1.81 16 2 C -0.13 -1.71 4.78 29.85 0.14 -1.57 16 3 C 0.49 11.47 7.39 87.66 0.65 12.11 16 4 O -0.55 -19.85 11.75 20.55 0.24 -19.61 16 5 N -0.61 -10.47 2.97 -799.18 -2.38 -12.85 16 6 C 0.10 0.66 6.35 86.36 0.55 1.21 16 7 C -0.13 -0.74 6.08 30.67 0.19 -0.55 16 8 C -0.11 -0.94 5.88 30.63 0.18 -0.76 16 9 C -0.12 -2.01 5.33 30.68 0.16 -1.85 16 10 C 0.14 2.85 3.31 44.22 0.15 2.99 16 11 H 0.11 1.75 7.92 -2.39 -0.02 1.73 16 12 C 0.54 17.77 4.34 87.65 0.38 18.15 16 13 O -0.54 -21.67 11.75 20.51 0.24 -21.43 16 14 N -0.63 -23.06 5.45 -307.52 -1.68 -24.74 16 15 C 0.28 12.77 8.11 133.33 1.08 13.85 16 16 C -0.29 -12.94 9.61 22.11 0.21 -12.73 16 17 C 0.06 2.37 11.44 83.52 0.96 3.32 16 18 N -0.35 -17.16 3.67 -351.83 -1.29 -18.45 16 19 C 0.24 12.00 5.33 85.63 0.46 12.46 16 20 C -0.55 -33.09 9.79 25.60 0.25 -32.84 16 21 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 22 C 0.02 0.89 5.47 84.65 0.46 1.35 16 23 N -0.94 -59.46 13.96 21.45 0.30 -59.16 16 24 Si 0.96 42.40 27.47 68.60 1.88 44.28 16 25 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 26 H -0.24 -9.88 6.54 99.48 0.65 -9.23 16 27 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 28 N -0.35 -18.24 12.43 -54.45 -0.68 -18.91 16 29 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.03 0.83 8.10 -2.39 -0.02 0.81 16 31 H 0.04 0.87 8.10 -2.39 -0.02 0.85 16 32 H 0.12 0.83 7.69 -2.39 -0.02 0.82 16 33 H 0.12 1.01 7.94 -2.39 -0.02 0.99 16 34 H 0.11 0.21 5.93 -2.39 -0.01 0.19 16 35 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.06 1.24 7.93 -2.39 -0.02 1.22 16 42 H 0.42 12.81 8.67 -92.71 -0.80 12.00 16 43 H 0.16 7.12 5.92 -2.91 -0.02 7.10 16 44 H 0.21 6.70 8.06 -2.91 -0.02 6.68 16 45 H 0.08 3.46 7.50 -2.39 -0.02 3.44 16 46 H 0.04 2.09 7.20 -2.38 -0.02 2.07 16 47 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -92.20 376.90 3.25 -88.95 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.13 Total: 28.59 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 6.48 Total: 13.33 kcal Atomic # 7 Polarization: -128.39 SS G_CDS: -5.72 Total: -134.11 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: 0.48 Total: -41.04 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.88 Total: 44.28 kcal Total: -92.20 3.25 -88.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117710585.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.136 kcal (2) G-P(sol) polarization free energy of solvation -92.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds