Wall clock time and date at job start Tue Mar 31 2020 18:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47447 * 2 1 4 4 O 1.21285 * 119.99475 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99921 * 179.97438 * 3 2 1 6 6 C 1.46923 * 120.63508 * 0.02562 * 5 3 2 7 7 C 1.53186 * 108.77856 * 126.41298 * 6 5 3 8 8 C 1.53038 * 109.31217 * 54.63394 * 7 6 5 9 9 C 1.53039 * 109.53906 * 298.63352 * 8 7 6 10 10 H 1.09003 * 109.50080 * 301.38139 * 9 8 7 11 11 C 1.50696 * 109.49825 * 181.31885 * 9 8 7 12 12 O 1.21292 * 120.00302 * 359.97438 * 11 9 8 13 13 N 1.34778 * 120.00247 * 180.02562 * 11 9 8 14 14 C 1.40158 * 120.00475 * 179.97438 * 13 11 9 15 15 C 1.40415 * 125.96854 * 359.97438 * 14 13 11 16 16 C 1.35242 * 107.86404 * 180.02562 * 15 14 13 17 17 N 1.34967 * 107.86285 * 0.02562 * 16 15 14 18 18 C 1.46502 * 125.97717 * 180.02562 * 17 16 15 19 19 C 1.50689 * 109.47345 * 124.98046 * 18 17 16 20 20 H 1.07998 * 120.00149 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99925 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99932 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99959 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47331 * 89.99969 * 23 21 19 25 25 H 1.48504 * 109.46838 * 209.99862 * 23 21 19 26 26 H 1.48500 * 109.46903 * 329.99772 * 23 21 19 27 27 N 1.31215 * 125.97634 * 180.02562 * 14 13 11 28 28 C 1.46925 * 120.62614 * 180.02562 * 5 3 2 29 29 H 1.08993 * 109.46930 * 300.00156 * 1 2 3 30 30 H 1.09000 * 109.46867 * 60.00352 * 1 2 3 31 31 H 1.08998 * 109.46980 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47465 * 239.99438 * 2 1 3 33 33 H 1.09005 * 109.46879 * 120.00113 * 2 1 3 34 34 H 1.09006 * 109.58281 * 6.62143 * 6 5 3 35 35 H 1.09003 * 109.69917 * 246.27247 * 6 5 3 36 36 H 1.09004 * 109.49817 * 294.68277 * 7 6 5 37 37 H 1.08999 * 109.52785 * 174.60341 * 7 6 5 38 38 H 1.09000 * 109.45825 * 178.61733 * 8 7 6 39 39 H 1.08994 * 109.44859 * 58.65132 * 8 7 6 40 40 H 0.97004 * 119.99661 * 359.97438 * 13 11 9 41 41 H 1.07998 * 126.07024 * 359.76211 * 15 14 13 42 42 H 1.07996 * 126.06945 * 179.97438 * 16 15 14 43 43 H 1.08999 * 109.46927 * 244.98304 * 18 17 16 44 44 H 1.09000 * 109.46823 * 4.97632 * 18 17 16 45 45 H 0.97005 * 120.00140 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.58501 * 113.79774 * 28 5 3 47 47 H 1.09003 * 109.58734 * 353.37780 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.3245 0.5608 0.0005 7 6 5.2976 0.7565 -1.1662 8 6 5.9319 2.1459 -1.0687 9 6 4.8408 3.2146 -1.1653 10 1 4.3055 3.1038 -2.1084 11 6 5.4696 4.5826 -1.1017 12 8 6.6723 4.6927 -0.9896 13 7 4.6956 5.6839 -1.1684 14 6 5.2803 6.9563 -1.1087 15 6 6.6518 7.2284 -0.9802 16 6 6.8081 8.5716 -0.9594 17 7 5.5855 9.1324 -1.0696 18 6 5.2959 10.5684 -1.0900 19 6 4.5085 10.9045 -2.3301 20 1 4.2500 10.1264 -3.0330 21 6 4.1191 12.2056 -2.5679 22 7 4.4344 13.1532 -1.7122 23 14 3.1424 12.6222 -4.1048 24 1 1.6907 12.5026 -3.8163 25 1 3.4507 14.0126 -4.5254 26 1 3.5096 11.6824 -5.1944 27 7 4.6418 8.1014 -1.1622 28 6 3.8625 3.0467 0.0011 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.7969 -0.3856 -0.1183 35 1 4.8769 0.5557 0.9402 36 1 4.7576 0.6685 -2.1090 37 1 6.0777 -0.0035 -1.1215 38 1 6.6432 2.2784 -1.8840 39 1 6.4507 2.2418 -0.1150 40 1 3.7336 5.5959 -1.2577 41 1 7.4414 6.4952 -0.9063 42 1 7.7449 9.1014 -0.8696 43 1 4.7145 10.8344 -0.2072 44 1 6.2315 11.1276 -1.0909 45 1 4.1601 14.0685 -1.8793 46 1 4.3769 3.2472 0.9410 47 1 3.0301 3.7405 -0.1174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117713883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:08 Heat of formation + Delta-G solvation = 1.190829 kcal Electronic energy + Delta-G solvation = -28352.631931 eV Core-core repulsion = 24343.948497 eV Total energy + Delta-G solvation = -4008.683434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.04454 -40.43963 -39.38101 -37.44979 -34.81945 -33.73671 -33.33684 -32.84483 -31.81811 -30.70695 -29.31647 -26.79654 -26.38488 -25.17271 -23.63189 -23.07825 -22.09164 -20.92739 -20.03550 -19.47306 -19.26462 -17.78771 -16.87567 -16.61317 -16.48279 -16.38421 -16.07922 -15.45691 -15.30984 -14.68488 -14.49566 -14.43090 -14.16756 -14.00666 -13.76634 -13.67384 -13.13879 -13.02926 -12.82974 -12.54091 -12.33694 -12.24285 -12.14717 -11.88491 -11.75601 -11.55801 -11.38017 -11.33374 -11.05047 -11.01990 -10.88226 -10.43903 -10.25241 -10.17082 -9.98347 -9.60069 -9.49194 -9.05886 -8.62830 -8.13940 -7.48201 -6.23868 -4.28851 2.17931 2.31795 2.54547 2.77774 2.93078 3.24851 3.30533 3.35695 3.70257 3.84152 4.04296 4.27657 4.34015 4.37214 4.46388 4.53195 4.63975 4.68248 4.71066 4.85718 4.98670 5.04636 5.11391 5.20641 5.29090 5.37720 5.40245 5.45071 5.52325 5.55989 5.58701 5.77551 5.80058 5.86842 5.95189 6.04249 6.25846 6.47615 6.58795 6.85544 6.97781 7.05607 7.39419 7.54801 7.71378 7.82018 7.88989 8.04208 8.20220 8.63145 8.80584 9.36789 10.84895 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014974 B = 0.002344 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.400392 B =11942.858264 C =13243.249741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.142 4.142 3 C 0.512 3.488 4 O -0.535 6.535 5 N -0.614 5.614 6 C 0.104 3.896 7 C -0.136 4.136 8 C -0.100 4.100 9 C -0.116 4.116 10 H 0.104 0.896 11 C 0.526 3.474 12 O -0.514 6.514 13 N -0.629 5.629 14 C 0.255 3.745 15 C -0.287 4.287 16 C 0.051 3.949 17 N -0.318 5.318 18 C 0.258 3.742 19 C -0.528 4.528 20 H 0.069 0.931 21 C 0.062 3.938 22 N -0.895 5.895 23 Si 0.908 3.092 24 H -0.277 1.277 25 H -0.284 1.284 26 H -0.273 1.273 27 N -0.302 5.302 28 C 0.118 3.882 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.412 0.588 41 H 0.159 0.841 42 H 0.168 0.832 43 H 0.045 0.955 44 H 0.057 0.943 45 H 0.267 0.733 46 H 0.077 0.923 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.419 -29.823 3.827 30.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.182 4.182 3 C 0.301 3.699 4 O -0.411 6.411 5 N -0.348 5.348 6 C -0.019 4.019 7 C -0.174 4.174 8 C -0.138 4.138 9 C -0.139 4.139 10 H 0.122 0.878 11 C 0.311 3.689 12 O -0.387 6.387 13 N -0.277 5.277 14 C 0.002 3.998 15 C -0.319 4.319 16 C -0.099 4.099 17 N -0.100 5.100 18 C 0.141 3.859 19 C -0.567 4.567 20 H 0.087 0.913 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.735 3.265 24 H -0.203 1.203 25 H -0.210 1.210 26 H -0.197 1.197 27 N -0.133 5.133 28 C -0.005 4.005 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.247 0.753 41 H 0.177 0.823 42 H 0.185 0.815 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.328 -28.356 3.851 28.618 hybrid contribution -0.109 0.052 -0.827 0.835 sum -0.436 -28.304 3.024 28.469 Atomic orbital electron populations 1.21553 0.92885 1.01643 1.03571 1.21665 0.98722 0.93674 1.04162 1.20870 0.81430 0.92102 0.75528 1.90738 1.54636 1.46564 1.49164 1.48118 1.05774 1.06903 1.73990 1.21837 0.91130 0.89538 0.99399 1.21958 0.98921 0.97804 0.98690 1.21353 0.96349 0.91817 1.04309 1.21684 0.98321 0.92317 1.01551 0.87769 1.20349 0.87116 0.85091 0.76359 1.90647 1.14325 1.86368 1.47356 1.42558 1.10986 1.02407 1.71703 1.19123 0.91975 0.85169 1.03528 1.21505 0.95355 0.95047 1.19965 1.22567 0.91174 0.93814 1.02352 1.49103 1.02443 1.07409 1.51038 1.19753 0.98630 0.68221 0.99340 1.21249 1.35295 0.94069 1.06065 0.91318 1.24947 0.95911 0.95810 0.97421 1.69917 1.46008 1.01442 1.35980 0.86321 0.80204 0.77529 0.82412 1.20301 1.20976 1.19729 1.77355 1.15452 0.93030 1.27508 1.21529 0.97585 0.83922 0.97436 0.91895 0.91858 0.92034 0.88856 0.88910 0.89385 0.90843 0.91201 0.89903 0.90284 0.90566 0.75292 0.82323 0.81480 0.93689 0.92511 0.92320 0.90522 0.88187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.20 37.16 0.34 -0.56 16 2 C -0.14 -0.78 4.77 -27.88 -0.13 -0.92 16 3 C 0.51 4.79 7.70 -10.98 -0.08 4.70 16 4 O -0.53 -7.35 15.40 5.55 0.09 -7.27 16 5 N -0.61 -4.80 2.97 -172.78 -0.51 -5.31 16 6 C 0.10 0.47 6.34 -3.72 -0.02 0.45 16 7 C -0.14 -0.65 6.08 -26.62 -0.16 -0.81 16 8 C -0.10 -0.78 4.46 -26.69 -0.12 -0.89 16 9 C -0.12 -1.09 2.67 -91.67 -0.25 -1.34 16 10 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 11 C 0.53 7.20 7.12 -10.99 -0.08 7.13 16 12 O -0.51 -8.44 13.11 5.55 0.07 -8.37 16 13 N -0.63 -9.80 5.35 -11.13 -0.06 -9.86 16 14 C 0.26 5.16 8.11 -154.39 -1.25 3.90 16 15 C -0.29 -5.69 9.61 -39.83 -0.38 -6.08 16 16 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 17 N -0.32 -7.48 3.67 -62.57 -0.23 -7.71 16 18 C 0.26 6.63 6.26 -5.20 -0.03 6.59 16 19 C -0.53 -14.87 9.24 -34.44 -0.32 -15.18 16 20 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.90 -25.54 13.29 55.43 0.74 -24.80 16 23 Si 0.91 21.63 29.54 -169.99 -5.02 16.61 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 27 N -0.30 -7.08 12.42 31.44 0.39 -6.69 16 28 C 0.12 1.11 5.57 -3.73 -0.02 1.09 16 29 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 30 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.33 7.69 -51.93 -0.40 -0.07 16 33 H 0.09 0.33 7.94 -51.93 -0.41 -0.08 16 34 H 0.09 0.21 5.93 -51.93 -0.31 -0.10 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 39 H 0.08 0.63 8.13 -51.93 -0.42 0.21 16 40 H 0.41 5.56 8.37 -40.82 -0.34 5.22 16 41 H 0.16 3.02 5.92 -52.49 -0.31 2.70 16 42 H 0.17 2.73 8.06 -52.49 -0.42 2.31 16 43 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.06 1.42 8.07 -51.93 -0.42 1.01 16 45 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.10 1.09 6.61 -51.93 -0.34 0.75 16 LS Contribution 385.19 15.07 5.80 5.80 Total: -1.00 -34.93 385.19 -8.68 -43.61 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.14 Total: 3.45 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -2.80 Total: 0.54 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 0.32 Total: -54.37 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.16 Total: -15.64 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.93 -8.68 -43.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117713883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.802 kcal (2) G-P(sol) polarization free energy of solvation -34.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds