Wall clock time and date at job start Tue Mar 31 2020 18:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47447 * 2 1 4 4 O 1.21285 * 119.99475 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99921 * 179.97438 * 3 2 1 6 6 C 1.46923 * 120.63508 * 0.02562 * 5 3 2 7 7 C 1.53186 * 108.77856 * 126.41298 * 6 5 3 8 8 C 1.53038 * 109.31217 * 54.63394 * 7 6 5 9 9 C 1.53039 * 109.53906 * 298.63352 * 8 7 6 10 10 H 1.09003 * 109.50080 * 301.38139 * 9 8 7 11 11 C 1.50696 * 109.49825 * 181.31885 * 9 8 7 12 12 O 1.21292 * 120.00302 * 359.97438 * 11 9 8 13 13 N 1.34778 * 120.00247 * 180.02562 * 11 9 8 14 14 C 1.40158 * 120.00475 * 179.97438 * 13 11 9 15 15 C 1.40415 * 125.96854 * 359.97438 * 14 13 11 16 16 C 1.35242 * 107.86404 * 180.02562 * 15 14 13 17 17 N 1.34967 * 107.86285 * 0.02562 * 16 15 14 18 18 C 1.46502 * 125.97717 * 180.02562 * 17 16 15 19 19 C 1.50689 * 109.47345 * 124.98046 * 18 17 16 20 20 H 1.07998 * 120.00149 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99925 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99932 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99959 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47331 * 89.99969 * 23 21 19 25 25 H 1.48504 * 109.46838 * 209.99862 * 23 21 19 26 26 H 1.48500 * 109.46903 * 329.99772 * 23 21 19 27 27 N 1.31215 * 125.97634 * 180.02562 * 14 13 11 28 28 C 1.46925 * 120.62614 * 180.02562 * 5 3 2 29 29 H 1.08993 * 109.46930 * 300.00156 * 1 2 3 30 30 H 1.09000 * 109.46867 * 60.00352 * 1 2 3 31 31 H 1.08998 * 109.46980 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47465 * 239.99438 * 2 1 3 33 33 H 1.09005 * 109.46879 * 120.00113 * 2 1 3 34 34 H 1.09006 * 109.58281 * 6.62143 * 6 5 3 35 35 H 1.09003 * 109.69917 * 246.27247 * 6 5 3 36 36 H 1.09004 * 109.49817 * 294.68277 * 7 6 5 37 37 H 1.08999 * 109.52785 * 174.60341 * 7 6 5 38 38 H 1.09000 * 109.45825 * 178.61733 * 8 7 6 39 39 H 1.08994 * 109.44859 * 58.65132 * 8 7 6 40 40 H 0.97004 * 119.99661 * 359.97438 * 13 11 9 41 41 H 1.07998 * 126.07024 * 359.76211 * 15 14 13 42 42 H 1.07996 * 126.06945 * 179.97438 * 16 15 14 43 43 H 1.08999 * 109.46927 * 244.98304 * 18 17 16 44 44 H 1.09000 * 109.46823 * 4.97632 * 18 17 16 45 45 H 0.97005 * 120.00140 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.58501 * 113.79774 * 28 5 3 47 47 H 1.09003 * 109.58734 * 353.37780 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.3245 0.5608 0.0005 7 6 5.2976 0.7565 -1.1662 8 6 5.9319 2.1459 -1.0687 9 6 4.8408 3.2146 -1.1653 10 1 4.3055 3.1038 -2.1084 11 6 5.4696 4.5826 -1.1017 12 8 6.6723 4.6927 -0.9896 13 7 4.6956 5.6839 -1.1684 14 6 5.2803 6.9563 -1.1087 15 6 6.6518 7.2284 -0.9802 16 6 6.8081 8.5716 -0.9594 17 7 5.5855 9.1324 -1.0696 18 6 5.2959 10.5684 -1.0900 19 6 4.5085 10.9045 -2.3301 20 1 4.2500 10.1264 -3.0330 21 6 4.1191 12.2056 -2.5679 22 7 4.4344 13.1532 -1.7122 23 14 3.1424 12.6222 -4.1048 24 1 1.6907 12.5026 -3.8163 25 1 3.4507 14.0126 -4.5254 26 1 3.5096 11.6824 -5.1944 27 7 4.6418 8.1014 -1.1622 28 6 3.8625 3.0467 0.0011 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.7969 -0.3856 -0.1183 35 1 4.8769 0.5557 0.9402 36 1 4.7576 0.6685 -2.1090 37 1 6.0777 -0.0035 -1.1215 38 1 6.6432 2.2784 -1.8840 39 1 6.4507 2.2418 -0.1150 40 1 3.7336 5.5959 -1.2577 41 1 7.4414 6.4952 -0.9063 42 1 7.7449 9.1014 -0.8696 43 1 4.7145 10.8344 -0.2072 44 1 6.2315 11.1276 -1.0909 45 1 4.1601 14.0685 -1.8793 46 1 4.3769 3.2472 0.9410 47 1 3.0301 3.7405 -0.1174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117713883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:07 Heat of formation + Delta-G solvation = -21.459915 kcal Electronic energy + Delta-G solvation = -28353.614141 eV Core-core repulsion = 24343.948497 eV Total energy + Delta-G solvation = -4009.665644 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.33320 -41.49655 -40.52080 -38.22424 -36.29932 -35.32493 -34.38926 -33.39426 -33.00119 -32.00651 -30.97410 -28.65267 -27.02993 -26.10171 -24.84272 -24.17784 -23.15434 -22.19726 -21.39826 -20.76336 -19.86843 -18.72238 -18.59427 -18.14691 -17.72355 -17.16378 -17.08271 -16.69876 -16.39741 -16.15743 -15.76348 -15.42443 -15.15941 -14.93999 -14.72906 -14.51743 -14.36210 -14.23967 -13.87309 -13.74717 -13.73160 -13.59141 -13.05034 -12.97065 -12.75772 -12.67758 -12.50070 -12.32274 -12.08708 -12.01202 -11.95413 -11.86083 -11.66398 -11.62547 -11.41717 -11.02029 -10.75108 -10.72499 -9.80089 -9.72429 -9.16350 -8.35717 -6.49731 0.87492 1.32036 1.35403 1.36362 1.39316 1.48961 1.62907 1.93102 2.19350 2.28204 2.40649 2.96047 3.42567 3.46502 3.72558 3.75100 3.92522 4.05295 4.14067 4.17848 4.21596 4.24128 4.29162 4.45080 4.59814 4.68959 4.70906 4.75372 4.81706 4.86804 4.89968 4.93089 4.99543 5.00548 5.08225 5.09340 5.10802 5.20962 5.35901 5.41553 5.48141 5.53988 5.77010 5.89361 6.17295 6.26483 6.38539 6.61907 6.94177 7.05082 7.16193 7.20157 8.72054 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014974 B = 0.002344 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.400392 B =11942.858264 C =13243.249741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.503 3.497 4 O -0.591 6.591 5 N -0.609 5.609 6 C 0.098 3.902 7 C -0.127 4.127 8 C -0.099 4.099 9 C -0.100 4.100 10 H 0.115 0.885 11 C 0.527 3.473 12 O -0.537 6.537 13 N -0.628 5.628 14 C 0.263 3.737 15 C -0.292 4.292 16 C 0.057 3.943 17 N -0.344 5.344 18 C 0.272 3.728 19 C -0.548 4.548 20 H 0.051 0.949 21 C 0.018 3.982 22 N -0.920 5.920 23 Si 0.972 3.028 24 H -0.274 1.274 25 H -0.270 1.270 26 H -0.273 1.273 27 N -0.349 5.349 28 C 0.120 3.880 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.420 0.580 41 H 0.171 0.829 42 H 0.203 0.797 43 H 0.021 0.979 44 H 0.060 0.940 45 H 0.273 0.727 46 H 0.074 0.926 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.023 -32.955 3.175 33.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C 0.294 3.706 4 O -0.472 6.472 5 N -0.342 5.342 6 C -0.023 4.023 7 C -0.165 4.165 8 C -0.137 4.137 9 C -0.123 4.123 10 H 0.133 0.867 11 C 0.315 3.685 12 O -0.412 6.412 13 N -0.277 5.277 14 C 0.008 3.992 15 C -0.323 4.323 16 C -0.092 4.092 17 N -0.126 5.126 18 C 0.154 3.846 19 C -0.586 4.586 20 H 0.069 0.931 21 C -0.182 4.182 22 N -0.558 5.558 23 Si 0.796 3.204 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.198 1.198 27 N -0.180 5.180 28 C -0.004 4.004 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.126 0.874 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.257 0.743 41 H 0.188 0.812 42 H 0.220 0.780 43 H 0.039 0.961 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.308 -31.548 3.208 31.712 hybrid contribution -0.228 0.912 -0.569 1.099 sum 0.080 -30.636 2.639 30.750 Atomic orbital electron populations 1.21564 0.94022 1.02622 1.01607 1.21743 0.97669 0.91144 1.06828 1.21692 0.81338 0.93278 0.74329 1.90718 1.56104 1.48504 1.51830 1.48229 1.06106 1.06870 1.72995 1.22169 0.90780 0.89520 0.99864 1.21943 0.99471 0.96111 0.98964 1.21394 0.95625 0.93043 1.03688 1.21669 0.98797 0.89765 1.02038 0.86690 1.21212 0.86804 0.85858 0.74662 1.90618 1.15558 1.86812 1.48209 1.42809 1.11729 1.01291 1.71851 1.19514 0.92404 0.86053 1.01210 1.21718 0.95413 0.95176 1.19969 1.23206 0.91325 0.94187 1.00487 1.48858 1.03616 1.06722 1.53355 1.19345 0.97985 0.69916 0.97398 1.21383 1.36387 0.94106 1.06768 0.93112 1.25743 0.96601 0.95509 1.00356 1.69990 1.46559 1.01883 1.37390 0.85348 0.78686 0.77750 0.78636 1.19910 1.19454 1.19756 1.77272 1.16683 0.94018 1.30033 1.21349 0.96718 0.85138 0.97203 0.93944 0.93867 0.89444 0.85891 0.86070 0.86116 0.89833 0.90777 0.87392 0.91081 0.91150 0.74328 0.81226 0.78026 0.96147 0.92172 0.91783 0.90743 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.20 71.98 0.66 -0.97 16 2 C -0.13 -1.06 4.77 29.85 0.14 -0.92 16 3 C 0.50 8.77 7.70 87.66 0.67 9.44 16 4 O -0.59 -16.72 15.40 -3.05 -0.05 -16.77 16 5 N -0.61 -8.35 2.97 -818.96 -2.43 -10.79 16 6 C 0.10 0.51 6.34 86.36 0.55 1.06 16 7 C -0.13 -0.74 6.08 30.67 0.19 -0.55 16 8 C -0.10 -1.33 4.46 30.62 0.14 -1.19 16 9 C -0.10 -1.78 2.67 -11.47 -0.03 -1.81 16 10 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 11 C 0.53 14.31 7.12 87.66 0.62 14.94 16 12 O -0.54 -17.41 13.11 -3.07 -0.04 -17.45 16 13 N -0.63 -19.90 5.35 -307.51 -1.65 -21.55 16 14 C 0.26 10.81 8.11 133.33 1.08 11.89 16 15 C -0.29 -11.54 9.61 22.11 0.21 -11.33 16 16 C 0.06 2.27 11.44 83.52 0.96 3.22 16 17 N -0.34 -16.60 3.67 -351.86 -1.29 -17.89 16 18 C 0.27 14.47 6.26 85.63 0.54 15.00 16 19 C -0.55 -31.67 9.24 25.60 0.24 -31.44 16 20 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 21 C 0.02 1.03 5.46 84.66 0.46 1.50 16 22 N -0.92 -52.91 13.29 21.45 0.28 -52.62 16 23 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 27 N -0.35 -16.90 12.42 -54.45 -0.68 -17.57 16 28 C 0.12 2.19 5.57 86.35 0.48 2.67 16 29 H 0.04 0.65 8.10 -2.39 -0.02 0.63 16 30 H 0.04 0.66 8.10 -2.39 -0.02 0.64 16 31 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.12 0.30 7.69 -2.39 -0.02 0.28 16 33 H 0.12 0.32 7.94 -2.38 -0.02 0.30 16 34 H 0.12 -0.09 5.93 -2.38 -0.01 -0.11 16 35 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 37 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.07 1.09 8.07 -2.39 -0.02 1.07 16 39 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 40 H 0.42 11.78 8.37 -92.71 -0.78 11.00 16 41 H 0.17 6.34 5.92 -2.91 -0.02 6.32 16 42 H 0.20 6.35 8.06 -2.91 -0.02 6.33 16 43 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.06 3.10 8.07 -2.39 -0.02 3.08 16 45 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 46 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.08 1.80 6.61 -2.39 -0.02 1.79 16 Total: -1.00 -79.07 385.19 3.29 -75.77 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.21 Total: 20.76 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 6.91 Total: 11.52 kcal Atomic # 7 Polarization: -114.66 SS G_CDS: -5.76 Total: -120.42 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.09 Total: -34.22 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -79.07 3.29 -75.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117713883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.313 kcal (2) G-P(sol) polarization free energy of solvation -79.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds